Published in J Biomed Inform on March 27, 2007
Natural Language Processing methods and systems for biomedical ontology learning. J Biomed Inform (2010) 1.95
Translational informatics: enabling high-throughput research paradigms. Physiol Genomics (2009) 1.41
Supporting the design of translational clinical studies through the generation and verification of conceptual knowledge-anchored hypotheses. AMIA Annu Symp Proc (2008) 1.39
Ontology-anchored Approaches to Conceptual Knowledge Discovery in a Multi-dimensional Research Data Repository. Summit on Translat Bioinforma (2008) 1.27
Biomedical informatics and outcomes research: enabling knowledge-driven health care. Circulation (2009) 1.11
Validation of knowledge acquisition for surgical process models. J Am Med Inform Assoc (2008) 1.01
Multi-dimensional discovery of biomarker and phenotype complexes. BMC Bioinformatics (2010) 0.97
The TOKEn project: knowledge synthesis for in silico science. J Am Med Inform Assoc (2011) 0.88
Development of an agile knowledge engineering framework in support of multi-disciplinary translational research. Summit on Translat Bioinforma (2009) 0.87
Evaluating the impact of conceptual knowledge engineering on the design and usability of a clinical and translational science collaboration portal. AMIA Jt Summits Transl Sci Proc (2010) 0.85
Importance of recurrence rating, morphology, hernial gap size, and risk factors in ventral and incisional hernia classification. Hernia (2012) 0.84
Chapter 1: Biomedical knowledge integration. PLoS Comput Biol (2012) 0.83
Conceptual dissonance: evaluating the efficacy of natural language processing techniques for validating translational knowledge constructs. Summit on Translat Bioinforma (2009) 0.83
A knowledge-anchored integrative image search and retrieval system. J Digit Imaging (2007) 0.76
Conceptual Knowledge Discovery in Databases for Drug Combinations Predictions in Malignant Melanoma. Stud Health Technol Inform (2015) 0.75
Towards symbiosis in knowledge representation and natural language processing for structuring clinical practice guidelines. Stud Health Technol Inform (2014) 0.75
Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project. J Am Med Inform Assoc (2012) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
A general natural-language text processor for clinical radiology. J Am Med Inform Assoc (1995) 29.81
Knowledge-based approaches to the maintenance of a large controlled medical terminology. J Am Med Inform Assoc (1995) 26.04
Desiderata for controlled medical vocabularies in the twenty-first century. Methods Inf Med (1998) 15.00
Unlocking clinical data from narrative reports: a study of natural language processing. Ann Intern Med (1995) 14.15
Toward a medical-concept representation language. The Canon Group. J Am Med Inform Assoc (1995) 13.91
Agreement, the f-measure, and reliability in information retrieval. J Am Med Inform Assoc (2005) 7.50
Phase II evaluation of clinical coding schemes: completeness, taxonomy, mapping, definitions, and clarity. CPRI Work Group on Codes and Structures. J Am Med Inform Assoc (1997) 7.18
Evaluating the coverage of controlled health data terminologies: report on the results of the NLM/AHCPR large scale vocabulary test. J Am Med Inform Assoc (1997) 5.16
Measuring agreement in medical informatics reliability studies. J Biomed Inform (2002) 5.00
Natural language processing and its future in medicine. Acad Med (1999) 4.25
The Unified Medical Language System: toward a collaborative approach for solving terminologic problems. J Am Med Inform Assoc (1998) 4.03
The Canon Group's effort: working toward a merged model. J Am Med Inform Assoc (1995) 4.03
Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics (2003) 3.97
Experiments in concept modeling for radiographic image reports. J Am Med Inform Assoc (1995) 3.85
Reference standards, judges, and comparison subjects: roles for experts in evaluating system performance. J Am Med Inform Assoc (2001) 3.70
From data to knowledge through concept-oriented terminologies: experience with the Medical Entities Dictionary. J Am Med Inform Assoc (2000) 3.51
The "Hawthorne effect"--what did the original Hawthorne studies actually show? Scand J Work Environ Health (2000) 3.39
Two biomedical sublanguages: a description based on the theories of Zellig Harris. J Biomed Inform (2002) 3.25
A primer on aspects of cognition for medical informatics. J Am Med Inform Assoc (2001) 2.76
Grounding conceptual knowledge in modality-specific systems. Trends Cogn Sci (2003) 2.74
Evaluation of the clinical LOINC (Logical Observation Identifiers, Names, and Codes) semantic structure as a terminology model for standardized assessment measures. J Am Med Inform Assoc (2000) 2.73
Protégé-2000: an open-source ontology-development and knowledge-acquisition environment. AMIA Annu Symp Proc (2003) 2.73
Planned NLM/AHCPR large-scale vocabulary test: using UMLS technology to determine the extent to which controlled vocabularies cover terminology needed for health care and public health. J Am Med Inform Assoc (1996) 2.57
Evaluating natural language processors in the clinical domain. Methods Inf Med (1998) 2.50
Comprehensive analysis of a medication dosing error related to CPOE. J Am Med Inform Assoc (2005) 2.41
Representing thoughts, words, and things in the UMLS. J Am Med Inform Assoc (1998) 2.39
A framework for analyzing the cognitive complexity of computer-assisted clinical ordering. J Biomed Inform (2003) 2.33
To err is not entirely human: complex technology and user cognition. J Biomed Inform (2005) 2.25
An evaluation of natural language processing methodologies. Proc AMIA Symp (1998) 1.94
The cognitive complexity of a provider order entry interface. AMIA Annu Symp Proc (2003) 1.94
Quantifying visual similarity in clinical iconic graphics. J Am Med Inform Assoc (2005) 1.72
The InterMed approach to sharable computer-interpretable guidelines: a review. J Am Med Inform Assoc (2003) 1.56
Collaborative efforts for representing nursing concepts in computer-based systems: international perspectives. J Am Med Inform Assoc (2001) 1.45
Kaiser Permanente's Convergent Medical Terminology. Stud Health Technol Inform (2004) 1.44
Methods of cognitive analysis to support the design and evaluation of biomedical systems: the case of clinical practice guidelines. J Biomed Inform (2001) 1.38
Aspects of the Taxonomic Relation in the Biomedical Domain. Form Ontol Inf Syst (2001) 1.02
Computer-based drug ordering: evaluation of interaction with a decision-support system. Stud Health Technol Inform (2004) 1.00
A UMLS-based knowledge acquisition tool for rule-based clinical decision support system development. J Am Med Inform Assoc (2001) 0.99
Representations of health concepts: a cognitive perspective. J Biomed Inform (2002) 0.97
Partitioning knowledge bases between advanced notification and clinical decision support systems. AMIA Annu Symp Proc (2005) 0.89
Central challenges facing the national clinical research enterprise. JAMA (2003) 17.41
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS. J Am Med Inform Assoc (2002) 4.24
Breaking the translational barriers: the value of integrating biomedical informatics and translational research. J Investig Med (2005) 3.67
Modeling electronic discharge summaries as a simple temporal constraint satisfaction problem. J Am Med Inform Assoc (2004) 2.88
Design features of graphs in health risk communication: a systematic review. J Am Med Inform Assoc (2006) 2.73
Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use. J Biomed Inform (2003) 2.54
The sublanguage of cross-coverage. Proc AMIA Symp (2002) 2.50
EliXR: an approach to eligibility criteria extraction and representation. J Am Med Inform Assoc (2011) 2.26
Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. Acad Med (2009) 2.25
Gene symbol disambiguation using knowledge-based profiles. Bioinformatics (2007) 2.13
A review of approaches to identifying patient phenotype cohorts using electronic health records. J Am Med Inform Assoc (2013) 2.02
PalmCIS: a wireless handheld application for satisfying clinician information needs. J Am Med Inform Assoc (2003) 2.02
Document ontology: supporting narrative documents in electronic health records. AMIA Annu Symp Proc (2005) 2.00
Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. J Am Med Inform Assoc (2012) 1.79
Reengineering clinical research with informatics. J Investig Med (2006) 1.79
Incidence of retinopathy of prematurity from 1996 to 2000: analysis of a comprehensive New York state patient database. Ophthalmology (2004) 1.77
Quantifying visual similarity in clinical iconic graphics. J Am Med Inform Assoc (2005) 1.72
Preliminary development of the physician documentation quality instrument. J Am Med Inform Assoc (2008) 1.62
Reliability of SNOMED-CT coding by three physicians using two terminology browsers. AMIA Annu Symp Proc (2006) 1.61
Evolution of coauthorship in public health services and systems research. Am J Prev Med (2011) 1.44
A day in the life of a clinical research coordinator: observations from community practice settings. Stud Health Technol Inform (2007) 1.38
Signposts along the NIH roadmap for reengineering clinical research: lessons from the Clinical Research Networks initiative. Arch Intern Med (2008) 1.33
Semi-Automatically Inducing Semantic Classes of Clinical Research Eligibility Criteria Using UMLS and Hierarchical Clustering. AMIA Annu Symp Proc (2010) 1.33
Modeling clinical trials workflow in community practice settings. AMIA Annu Symp Proc (2006) 1.31
Exploring the ability of natural language processing to extract data from nursing narratives. Comput Inform Nurs (2009) 1.30
ISO reference terminology models for nursing: applicability for natural language processing of nursing narratives. Int J Med Inform (2005) 1.30
Iterative evaluation of the Health Level 7--Logical Observation Identifiers Names and Codes Clinical Document Ontology for representing clinical document names: a case report. J Am Med Inform Assoc (2009) 1.27
Signout: a collaborative document with implications for the future of clinical information systems. AMIA Annu Symp Proc (2007) 1.24
Use of computerized surveillance to detect nosocomial pneumonia in neonatal intensive care unit patients. Am J Infect Control (2005) 1.19
An unsupervised machine learning approach to segmentation of clinician-entered free text. AMIA Annu Symp Proc (2007) 1.16
Clinicians' perceptions of usability of eNote. AMIA Annu Symp Proc (2005) 1.14
Scenario-based assessment of physicians' information needs. Stud Health Technol Inform (2004) 1.14
Extracting temporal constraints from clinical research eligibility criteria using conditional random fields. AMIA Annu Symp Proc (2011) 1.12
Implementation of workflow engine technology to deliver basic clinical decision support functionality. BMC Med Res Methodol (2011) 1.10
Graph theoretic modeling of large-scale semantic networks. J Biomed Inform (2005) 1.10
Modeling participant-related clinical research events using conceptual knowledge acquisition techniques. AMIA Annu Symp Proc (2007) 1.10
Natural language processing challenges in HIV/AIDS clinic notes. AMIA Annu Symp Proc (2003) 1.08
Representing nested semantic information in a linear string of text using XML. Proc AMIA Symp (2002) 1.07
Content and structure of clinical problem lists: a corpus analysis. AMIA Annu Symp Proc (2008) 1.06
Topological analysis of large-scale biomedical terminology structures. J Am Med Inform Assoc (2007) 1.06
Voice capture of medical residents' clinical information needs during an inpatient rotation. J Am Med Inform Assoc (2009) 1.03
Development and evaluation of nursing user interface screens using multiple methods. J Biomed Inform (2009) 1.02
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. BMC Bioinformatics (2009) 1.01
Assessing data relevance for automated generation of a clinical summary. AMIA Annu Symp Proc (2007) 1.01
Re-engineering opportunities in clinical research using workflow analysis in community practice settings. AMIA Annu Symp Proc (2008) 0.96
Software engineering risk factors in the implementation of a small electronic medical record system: the problem of scalability. Proc AMIA Symp (2002) 0.96
Is the Health Level 7/LOINC document ontology adequate for representing nursing documents? Stud Health Technol Inform (2006) 0.95
A multi-level model of information seeking in the clinical domain. J Biomed Inform (2007) 0.92
Heuristic evaluation of eNote: an electronic notes system. AMIA Annu Symp Proc (2006) 0.92
Automatic learning of the morphology of medical language using information compression. AMIA Annu Symp Proc (2003) 0.91
Social network analysis of interdisciplinarity in obesity research. AMIA Annu Symp Proc (2008) 0.91
Documented lifestyle education among young adults with incident hypertension. J Gen Intern Med (2014) 0.91
Evaluation of a prototype search and visualization system for exploring scientific communities. AMIA Annu Symp Proc (2009) 0.90
Health information exchange system usage patterns in three communities: practice sites, users, patients, and data. Int J Med Inform (2013) 0.90
Analysis of 30 genes (355 SNPS) related to energy homeostasis for association with adiposity in European-American and Yup'ik Eskimo populations. Hum Hered (2008) 0.89
Medical providers' dental information needs: a baseline survey. Stud Health Technol Inform (2011) 0.87
The cognitive demands of an innovative query user interface. Proc AMIA Symp (2002) 0.87
Previous cancer screening behavior as predictor of endoscopic colon cancer screening among women aged 50 and over, in NYC 2002. J Community Health (2008) 0.87
Improving Clinical Trial Participant Tracking Tools Using Knowledge-anchored Design Methodologies. Appl Clin Inform (2010) 0.86
Computer and World Wide Web accessibility by visually disabled patients: problems and solutions. Surv Ophthalmol (2005) 0.85
A phase III skin cancer chemoprevention study of DFMO: long-term follow-up of skin cancer events and toxicity. Cancer Prev Res (Phila) (2012) 0.84
The REmote Patient Education in a Telemedicine Environment Architecture (REPETE). Telemed J E Health (2008) 0.83
Coverage of clinical trials tasks in existing ontologies. AMIA Annu Symp Proc (2006) 0.83
In situ characterization of aluminum-containing mineral-microorganism aqueous suspensions using scanning transmission X-ray microscopy. Langmuir (2004) 0.83
Markup of temporal information in electronic health records. Stud Health Technol Inform (2006) 0.83
Implementing unique device identification in electronic health record systems: organizational, workflow, and technological challenges. Med Care (2014) 0.81
A tool for abstracting relevant classes of concepts: the Common Ancestry Summarizer. Stud Health Technol Inform (2004) 0.81
The role of nonverbal and verbal communication in a multimedia informed consent process. Appl Clin Inform (2011) 0.81
Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis. PLoS Comput Biol (2011) 0.80
Role of organic acids in promoting colloidal transport of mercury from mine tailings. Environ Sci Technol (2005) 0.80
Architecture for remote training of home telemedicine patients. AMIA Annu Symp Proc (2005) 0.80
Adsorption of organic matter at mineral/water interfaces. IV. Adsorption of humic substances at boehmite/water interfaces and impact on boehmite dissolution. Langmuir (2005) 0.79
Consensus-based construction of a taxonomy of clinical trial tasks. AMIA Annu Symp Proc (2006) 0.79
Analyzing the structure and content of public health messages. AMIA Annu Symp Proc (2005) 0.79
A methodological framework for evaluating mobile health devices. AMIA Annu Symp Proc (2006) 0.78
Understanding facilitators and barriers to reengineering the clinical research enterprise in community-based practice settings. Contemp Clin Trials (2013) 0.78
Adsorption of Suwannee River fulvic acid on aluminum oxyhydroxide surfaces: an in situ ATR-FTIR study. Langmuir (2004) 0.77
REPETE2: A next generation home telemedicine architecture. AMIA Annu Symp Proc (2007) 0.77
A cloud-based approach to medical NLP. AMIA Annu Symp Proc (2011) 0.76
Feasibility study of speech recognition for gathering information needs. AMIA Annu Symp Proc (2007) 0.76
Web-based educational resources for low literacy families in the NICU. AMIA Annu Symp Proc (2005) 0.75
Multilingual information retrieval in thoracic radiology: feasibility study. Stud Health Technol Inform (2007) 0.75
The effects of redesigning the IDEATel architecture on glucose uploads. Telemed J E Health (2009) 0.75
Improving the human readability of Arden Syntax medical logic modules using a concept-oriented terminology and object-oriented programming expressions. Comput Inform Nurs (2006) 0.75
Modeling knowledge resource selection in expert librarian search. Stud Health Technol Inform (2009) 0.75
Novel techniques for survey and classification studies to improve patient centered websites. AMIA Annu Symp Proc (2006) 0.75
An experimental system for comparing speed, accuracy, and completeness of physician data entry using electronic and paper methods. AMIA Annu Symp Proc (2003) 0.75
Proof of concept for the role of glycemic control in the early detection of infections in diabetics. Health Informatics J (2012) 0.75
Improved techniques for quantitatively comparing data visualizations. AMIA Annu Symp Proc (2008) 0.75
Facilitating the iterative design of informatics tools to advance the science of autism. Stud Health Technol Inform (2011) 0.75
Capturing clinical questions during medical residents' workflow. AMIA Annu Symp Proc (2008) 0.75
Integrating an Informationist Into Graduate Education: Case Study With Preliminary Results. Med Ref Serv Q (2015) 0.75
Developing multilevel search filters for clinical questions represented as conceptual graphs. AMIA Annu Symp Proc (2008) 0.75