PubRank

Avi Ma'ayan

Author PubWeight™ 123.84‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Mesenchymal and haematopoietic stem cells form a unique bone marrow niche. Nature 2010 15.28
2 Patterns and rates of exonic de novo mutations in autism spectrum disorders. Nature 2012 13.71
3 Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages. Nat Immunol 2012 7.32
4 Functional atlas of the integrin adhesome. Nat Cell Biol 2007 6.89
5 Synaptic, transcriptional and chromatin genes disrupted in autism. Nature 2014 5.30
6 Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics 2013 4.73
7 Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases. BMC Bioinformatics 2007 3.44
8 ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. Bioinformatics 2010 3.42
9 Systems biology of stem cell fate and cellular reprogramming. Nat Rev Mol Cell Biol 2009 2.93
10 Induction of a hemogenic program in mouse fibroblasts. Cell Stem Cell 2013 2.71
11 Systems-level dynamic analyses of fate change in murine embryonic stem cells. Nature 2009 2.70
12 Minimal differentiation of classical monocytes as they survey steady-state tissues and transport antigen to lymph nodes. Immunity 2013 2.61
13 Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair. Nat Genet 2009 2.57
14 KEA: kinase enrichment analysis. Bioinformatics 2009 1.94
15 A systems approach identifies HIPK2 as a key regulator of kidney fibrosis. Nat Med 2012 1.83
16 Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth. Science 2008 1.82
17 Krüppel-like factor 6 regulates mitochondrial function in the kidney. J Clin Invest 2015 1.72
18 Systems pharmacology of arrhythmias. Sci Signal 2010 1.72
19 Oct4 links multiple epigenetic pathways to the pluripotency network. Cell Res 2011 1.69
20 Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR). Proc Natl Acad Sci U S A 2010 1.64
21 Systems approach to explore components and interactions in the presynapse. Proteomics 2009 1.61
22 Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity. Nat Cell Biol 2012 1.56
23 Regulation of embryonic and induced pluripotency by aurora kinase-p53 signaling. Cell Stem Cell 2012 1.54
24 Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorder. Am J Hum Genet 2013 1.39
25 Sox2 in the dermal papilla niche controls hair growth by fine-tuning BMP signaling in differentiating hair shaft progenitors. Dev Cell 2012 1.34
26 Lists2Networks: integrated analysis of gene/protein lists. BMC Bioinformatics 2010 1.33
27 Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers. Bioinformatics 2011 1.31
28 Kruppel-like factor 15 (KLF15) is a key regulator of podocyte differentiation. J Biol Chem 2012 1.21
29 Network2Canvas: network visualization on a canvas with enrichment analysis. Bioinformatics 2013 1.20
30 DAWN: a framework to identify autism genes and subnetworks using gene expression and genetics. Mol Autism 2014 1.20
31 AVIS: AJAX viewer of interactive signaling networks. Bioinformatics 2007 1.19
32 ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. Database (Oxford) 2013 1.10
33 t4 workshop report: Pathways of Toxicity. ALTEX 2013 1.06
34 Toward a complete in silico, multi-layered embryonic stem cell regulatory network. Wiley Interdiscip Rev Syst Biol Med 2010 1.06
35 GATE: software for the analysis and visualization of high-dimensional time series expression data. Bioinformatics 2009 1.05
36 Systems biology of kidney diseases. Kidney Int 2011 1.05
37 Expression of HIV transgene aggravates kidney injury in diabetic mice. Kidney Int 2013 1.00
38 Flotillin-mediated endocytic events dictate cell type-specific responses to semaphorin 3A. J Neurosci 2010 0.99
39 Genes2FANs: connecting genes through functional association networks. BMC Bioinformatics 2012 0.99
40 Sets2Networks: network inference from repeated observations of sets. BMC Syst Biol 2012 0.95
41 Systems pharmacology meets predictive, preventive, personalized and participatory medicine. Pharmacogenomics 2013 0.93
42 Receptor heteromerization expands the repertoire of cannabinoid signaling in rodent neurons. PLoS One 2012 0.91
43 Genes2WordCloud: a quick way to identify biological themes from gene lists and free text. Source Code Biol Med 2011 0.91
44 SVM classifier to predict genes important for self-renewal and pluripotency of mouse embryonic stem cells. BMC Syst Biol 2010 0.90
45 Introduction to statistical methods to analyze large data sets: principal components analysis. Sci Signal 2011 0.89
46 Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability. Am J Med Genet C Semin Med Genet 2012 0.88
47 Chronic morphine alters the presynaptic protein profile: identification of novel molecular targets using proteomics and network analysis. PLoS One 2011 0.88
48 Interconnected network motifs control podocyte morphology and kidney function. Sci Signal 2014 0.87
49 ELK1 transcription factor linked to dysregulated striatal mu opioid receptor signaling network and OPRM1 polymorphism in human heroin abusers. Biol Psychiatry 2013 0.87
50 Functions of bifans in context of multiple regulatory motifs in signaling networks. Biophys J 2008 0.87
51 Renoprotective effect of combined inhibition of angiotensin-converting enzyme and histone deacetylase. J Am Soc Nephrol 2013 0.87
52 Introduction to statistical methods for analyzing large data sets: gene-set enrichment analysis. Sci Signal 2011 0.85
53 Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format. Source Code Biol Med 2011 0.85
54 Multiple kinases and system robustness: a link between Cdc37 and genome integrity. Cell Cycle 2007 0.84
55 B-myb is an essential regulator of hematopoietic stem cell and myeloid progenitor cell development. Proc Natl Acad Sci U S A 2014 0.83
56 Activation of alternate prosurvival pathways accounts for acquired sunitinib resistance in U87MG glioma xenografts. J Pharmacol Exp Ther 2012 0.82
57 Microdynamics and criticality of adaptive regulatory networks. Phys Rev Lett 2010 0.82
58 Transforming growth factor β signaling controls activities of human intestinal CD8(+)T suppressor cells. Gastroenterology 2012 0.81
59 Inferring the Sign of Kinase-Substrate Interactions by Combining Quantitative Phosphoproteomics with a Literature-Based Mammalian Kinome Network. Proc IEEE Int Symp Bioinformatics Bioeng 2010 0.81
60 Recovering protein-protein and domain-domain interactions from aggregation of IP-MS proteomics of coregulator complexes. PLoS Comput Biol 2011 0.80
61 FNV: light-weight flash-based network and pathway viewer. Bioinformatics 2011 0.78
62 Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. Brief Bioinform 2017 0.77
63 Publisher’s Note:Abstraction for data integration:Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction. Comput Biol Chem 2015 0.75
64 Cell-specific prediction and application of drug-induced gene expression profiles. Pac Symp Biocomput 2018 0.75