Published in Methods Enzymol on January 01, 2007
Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev (2009) 3.62
A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress. PLoS Genet (2010) 2.73
Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions. Nucleic Acids Res (2009) 1.91
5-methylcytosine in RNA: detection, enzymatic formation and biological functions. Nucleic Acids Res (2009) 1.85
Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Nat Chem Biol (2010) 1.68
Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA. Nucleic Acids Res (2009) 1.52
Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates. PLoS Biol (2016) 1.46
A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs. Nucleic Acids Res (2014) 1.38
A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification. Nat Chem Biol (2012) 1.37
Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase. Nature (2009) 1.15
Expanding role of the jumonji C domain as an RNA hydroxylase. J Biol Chem (2010) 1.10
Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry. Nat Protoc (2014) 1.09
Biogenesis of glutaminyl-mt tRNAGln in human mitochondria. Proc Natl Acad Sci U S A (2009) 1.06
The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon. EMBO J (2008) 1.06
Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4. Nucleic Acids Res (2009) 1.03
Loss of ribosomal RNA modification causes developmental defects in zebrafish. Nucleic Acids Res (2011) 1.02
Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeast. Proc Natl Acad Sci U S A (2011) 1.01
Aquifex aeolicus tRNA (N2,N2-guanine)-dimethyltransferase (Trm1) catalyzes transfer of methyl groups not only to guanine 26 but also to guanine 27 in tRNA. J Biol Chem (2009) 1.01
A system of RNA modifications and biased codon use controls cellular stress response at the level of translation. Chem Res Toxicol (2014) 0.98
Molecular basis of dihydrouridine formation on tRNA. Proc Natl Acad Sci U S A (2011) 0.97
Quantitative analysis of rRNA modifications using stable isotope labeling and mass spectrometry. J Am Chem Soc (2014) 0.96
Decoding system for the AUA codon by tRNAIle with the UAU anticodon in Mycoplasma mobile. Nucleic Acids Res (2013) 0.95
Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae. RNA (2011) 0.91
Trmt61B is a methyltransferase responsible for 1-methyladenosine at position 58 of human mitochondrial tRNAs. RNA (2012) 0.90
A single acetylation of 18 S rRNA is essential for biogenesis of the small ribosomal subunit in Saccharomyces cerevisiae. J Biol Chem (2014) 0.87
Discovery of the β-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs. Nucleic Acids Res (2014) 0.86
Base methylations in the double-stranded RNA by a fused methyltransferase bearing unwinding activity. Nucleic Acids Res (2011) 0.86
Destabilization of microRNAs in human cells by 3' deadenylation mediated by PARN and CUGBP1. Nucleic Acids Res (2015) 0.85
Human NAT10 is an ATP-dependent RNA acetyltransferase responsible for N4-acetylcytidine formation in 18 S ribosomal RNA (rRNA). J Biol Chem (2014) 0.84
Taurine-containing uridine modifications in tRNA anticodons are required to decipher non-universal genetic codes in ascidian mitochondria. J Biol Chem (2011) 0.84
Tertiary network in mammalian mitochondrial tRNAAsp revealed by solution probing and phylogeny. Nucleic Acids Res (2009) 0.81
Single methylation of 23S rRNA triggers late steps of 50S ribosomal subunit assembly. Proc Natl Acad Sci U S A (2015) 0.80
Structural dynamics of a mitochondrial tRNA possessing weak thermodynamic stability. Biochemistry (2014) 0.80
A Platform for Discovery and Quantification of Modified Ribonucleosides in RNA: Application to Stress-Induced Reprogramming of tRNA Modifications. Methods Enzymol (2015) 0.79
Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons. Nucleic Acids Res (2015) 0.78
A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs. Nucleic Acids Res (2016) 0.77
Identification of 2-methylthio cyclic N6-threonylcarbamoyladenosine (ms2ct6A) as a novel RNA modification at position 37 of tRNAs. Nucleic Acids Res (2016) 0.76
Decoding mechanism of non-universal genetic codes in Loligo bleekeri mitochondria. J Biol Chem (2013) 0.76
Diverse Mechanisms of Sulfur Decoration in Bacterial tRNA and Their Cellular Functions. Biomolecules (2017) 0.75
ALKBH1 is an RNA dioxygenase responsible for cytoplasmic and mitochondrial tRNA modifications. Nucleic Acids Res (2017) 0.75
Pimet, the Drosophila homolog of HEN1, mediates 2'-O-methylation of Piwi- interacting RNAs at their 3' ends. Genes Dev (2007) 4.68
Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev (2009) 3.62
Hsc70/Hsp90 chaperone machinery mediates ATP-dependent RISC loading of small RNA duplexes. Mol Cell (2010) 2.91
The 3' termini of mouse Piwi-interacting RNAs are 2'-O-methylated. Nat Struct Mol Biol (2007) 2.71
Role of NAD(P)H oxidase- and mitochondria-derived reactive oxygen species in cardioprotection of ischemic reperfusion injury by angiotensin II. Hypertension (2005) 2.67
A centrosomal Cdc20-APC pathway controls dendrite morphogenesis in postmitotic neurons. Cell (2009) 2.21
Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases. Annu Rev Genet (2011) 2.11
Mitochondria-specific RNA-modifying enzymes responsible for the biosynthesis of the wobble base in mitochondrial tRNAs. Implications for the molecular pathogenesis of human mitochondrial diseases. J Biol Chem (2004) 1.97
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA. EMBO J (2006) 1.95
Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions. Nucleic Acids Res (2009) 1.91
An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. Mol Cell (2003) 1.90
A CaMKIIβ signaling pathway at the centrosome regulates dendrite patterning in the brain. Nat Neurosci (2011) 1.80
Deficit of tRNA(Lys) modification by Cdkal1 causes the development of type 2 diabetes in mice. J Clin Invest (2011) 1.80
Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Nat Chem Biol (2010) 1.68
Snapshots of tRNA sulphuration via an adenylated intermediate. Nature (2006) 1.51
An OBSL1-Cul7Fbxw8 ubiquitin ligase signaling mechanism regulates Golgi morphology and dendrite patterning. PLoS Biol (2011) 1.40
A Cdc20-APC ubiquitin signaling pathway regulates presynaptic differentiation. Science (2009) 1.40
The effect of ultraviolet functionalization of titanium on integration with bone. Biomaterials (2008) 1.38
Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism. EMBO J (2003) 1.37
Torsin mediates primary envelopment of large ribonucleoprotein granules at the nuclear envelope. Cell Rep (2013) 1.31
LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria. Nucleic Acids Res (2012) 1.29
Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea. Mol Biol Evol (2010) 1.28
Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs. Cell Rep (2013) 1.28
A FOXO-Pak1 transcriptional pathway controls neuronal polarity. Genes Dev (2010) 1.27
Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA. J Mol Biol (2007) 1.25
Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures. J Biol Chem (2006) 1.16
Acetylcholine-dopamine balance hypothesis in the striatum: an update. Geriatr Gerontol Int (2010) 1.14
Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation. Mol Microbiol (2006) 1.11
Common thiolation mechanism in the biosynthesis of tRNA thiouridine and sulphur-containing cofactors. EMBO J (2008) 1.09
Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex. Structure (2006) 1.08
Biogenesis of glutaminyl-mt tRNAGln in human mitochondria. Proc Natl Acad Sci U S A (2009) 1.06
Human mitochondrial diseases caused by lack of taurine modification in mitochondrial tRNAs. Wiley Interdiscip Rev RNA (2011) 1.06
Familial spread of a virulent clone of Klebsiella pneumoniae causing primary liver abscess. J Clin Microbiol (2011) 1.05
Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain. Proc Natl Acad Sci U S A (2005) 1.04
Protease-activated receptor-2 (PAR-2) in the pancreas and parotid gland: Immunolocalization and involvement of nitric oxide in the evoked amylase secretion. Life Sci (2002) 1.03
Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4. Nucleic Acids Res (2009) 1.03
A JIP3-regulated GSK3β/DCX signaling pathway restricts axon branching. J Neurosci (2010) 1.03
Loss of ribosomal RNA modification causes developmental defects in zebrafish. Nucleic Acids Res (2011) 1.02
RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon. EMBO J (2009) 0.99
A gene involved in modifying transfer RNA is required for fungal pathogenicity and stress tolerance of Colletotrichum lagenarium. Mol Microbiol (2006) 0.99
Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2. Proc Natl Acad Sci U S A (2009) 0.99
Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog. Proc Natl Acad Sci U S A (2011) 0.99
Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification. Nucleic Acids Res (2010) 0.97
Molecular basis of dihydrouridine formation on tRNA. Proc Natl Acad Sci U S A (2011) 0.97
The substrate specificity of tRNA (m1G37) methyltransferase (TrmD) from Aquifex aeolicus. Genes Cells (2006) 0.96
The X-linked intellectual disability protein PHF6 associates with the PAF1 complex and regulates neuronal migration in the mammalian brain. Neuron (2013) 0.96
A TRPC5-regulated calcium signaling pathway controls dendrite patterning in the mammalian brain. Genes Dev (2011) 0.96
Effects of pico-to-nanometer-thin TiO2 coating on the biological properties of microroughened titanium. Biomaterials (2011) 0.95
Substrate tRNA recognition mechanism of tRNA (m7G46) methyltransferase from Aquifex aeolicus. J Biol Chem (2004) 0.93
An isoform-specific SnoN1-FOXO1 repressor complex controls neuronal morphogenesis and positioning in the mammalian brain. Neuron (2011) 0.93
Wobble inosine tRNA modification is essential to cell cycle progression in G(1)/S and G(2)/M transitions in fission yeast. J Biol Chem (2007) 0.91
Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae. RNA (2011) 0.91
Protease-activated receptor-2 (PAR-2) in the rat gastric mucosa: immunolocalization and facilitation of pepsin/pepsinogen secretion. Br J Pharmacol (2002) 0.90
Enhancement of bone-titanium integration profile with UV-photofunctionalized titanium in a gap healing model. Biomaterials (2009) 0.90
Distribution and biosynthesis of caffeine in plants. Front Biosci (2004) 0.88
Severe neurological phenotypes of Q129 DRPLA transgenic mice serendipitously created by en masse expansion of CAG repeats in Q76 DRPLA mice. Hum Mol Genet (2008) 0.86
Base methylations in the double-stranded RNA by a fused methyltransferase bearing unwinding activity. Nucleic Acids Res (2011) 0.86
Enhanced osteoblast function on ultraviolet light-treated zirconia. Biomaterials (2008) 0.86
Transcriptional regulatory regions of the survivin gene activate an exogenous suicide gene in human tumors and enhance the sensitivity to a prodrug. Anticancer Res (2007) 0.85
Ultraviolet light treatment for the restoration of age-related degradation of titanium bioactivity. Int J Oral Maxillofac Implants (2010) 0.85
[A case of hyperammonemic encephalopathy in a patient with recurrent colon cancer treated with modified FOLFOX6]. Gan To Kagaku Ryoho (2009) 0.84
Bone integration capability of nanopolymorphic crystalline hydroxyapatite coated on titanium implants. Int J Nanomedicine (2012) 0.84
Possible involvement of increased glycoxidation and lipid peroxidation of elastin in atherogenesis in haemodialysis patients. Nephrol Dial Transplant (2002) 0.83
Effect of supramicron roughness characteristics produced by 1- and 2-step acid etching on the osseointegration capability of titanium. Int J Oral Maxillofac Implants (2007) 0.83
Modification of elastin by pentosidine is associated with the calcification of aortic media in patients with end-stage renal disease. Nephrol Dial Transplant (2003) 0.83
Leukocyte-targeted myocardial contrast echocardiography can assess the degree of acute allograft rejection in a rat cardiac transplantation model. Circulation (2004) 0.82
Tertiary network in mammalian mitochondrial tRNAAsp revealed by solution probing and phylogeny. Nucleic Acids Res (2009) 0.81
[Marked response to S-1 chemotherapy for para-aortic lymph node metastasis arising from gastric cancer]. Gan To Kagaku Ryoho (2007) 0.81
Simple and rapid synthesis of siRNA derived from in vitro transcribed shRNA. Nucleic Acids Res Suppl (2003) 0.80
Structural dynamics of a mitochondrial tRNA possessing weak thermodynamic stability. Biochemistry (2014) 0.80
Aminoacyl-tRNA surveillance by EF-Tu in mammalian mitochondria. Nucleic Acids Symp Ser (Oxf) (2007) 0.80
Quantitative PCR measurement of tRNA 2-methylthio modification for assessing type 2 diabetes risk. Clin Chem (2013) 0.80
Nanometer-thin TiO₂ enhances skeletal muscle cell phenotype and behavior. Int J Nanomedicine (2011) 0.80
[The preventive effect of flurbiprofen on preventing mesenteric traction syndrome]. Masui (2013) 0.79
Ubiquitin dimers control the hydrolase activity of UCH-L3. Neurochem Int (2008) 0.79
A novel Hap1-Tsc1 interaction regulates neuronal mTORC1 signaling and morphogenesis in the brain. J Neurosci (2013) 0.79
The Dock tag, an affinity tool for the purification of recombinant proteins, based on the interaction between dockerin and cohesin domains from Clostridium josui cellulosome. Protein Expr Purif (2009) 0.79
Effect of ultraviolet photoactivation of titanium on osseointegration in a rat model. Int J Oral Maxillofac Implants (2010) 0.79
N-Acetyl cysteine restores viability and function of rat odontoblast-like cells impaired by polymethylmethacrylate dental resin extract. Redox Rep (2009) 0.78
Structure-function analysis of human TYW2 enzyme required for the biosynthesis of a highly modified Wybutosine (yW) base in phenylalanine-tRNA. PLoS One (2012) 0.78
Microtopography of titanium suppresses osteoblastic differentiation but enhances chondroblastic differentiation of rat femoral periosteum-derived cells. J Biomed Mater Res A (2008) 0.78
Intestinal ischemia preconditions myocardium: role of protein kinase C and mitochondrial K(ATP) channel. Cardiovasc Res (2002) 0.78
Profiling sex-specific piRNAs in zebrafish. Genetics (2010) 0.78
Anterior and posterior inferior cerebellar artery infarction with sudden deafness and vertigo. J Clin Neurosci (2006) 0.78
Quality control of translation through the kinetic discrimination of tRNAs in the network of aminoacyl-tRNA synthetases. Nucleic Acids Res Suppl (2002) 0.77
Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu). Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.76
Silkworm as a host of baculovirus expression. Curr Pharm Biotechnol (2010) 0.76
Decoding mechanism of non-universal genetic codes in Loligo bleekeri mitochondria. J Biol Chem (2013) 0.76
Precise analysis of modification status at various stage of tRNA maturation in Saccharomyces cerevisiae. Nucleic Acids Symp Ser (Oxf) (2009) 0.76
Mesenchymal stem cells are efficiently transduced with adenoviruses bearing type 35-derived fibers and the transduced cells with the IL-28A gene produces cytotoxicity to lung carcinoma cells co-cultured. BMC Cancer (2014) 0.76
[Perioperative quality of life in patients who received "Bokutoh enhanced recovery after surgery" protocol management]. Masui (2013) 0.76