PubRank

Anna Tramontano

Author PubWeight™ 111.33‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cell 2011 9.24
2 The implications of alternative splicing in the ENCODE protein complement. Proc Natl Acad Sci U S A 2007 3.93
3 Critical assessment of methods of protein structure prediction (CASP)--round x. Proteins 2013 3.78
4 Critical assessment of methods of protein structure prediction-Round VII. Proteins 2007 3.23
5 Evaluation of annotation strategies using an entire genome sequence. Bioinformatics 2003 2.66
6 Critical assessment of methods of protein structure prediction (CASP)--round 6. Proteins 2005 2.58
7 Critical assessment of methods of protein structure prediction - Round VIII. Proteins 2009 2.25
8 Assessment of predictions in the model quality assessment category. Proteins 2007 2.25
9 Protein function annotation by homology-based inference. Genome Biol 2009 2.20
10 Critical assessment of methods of protein structure prediction (CASP)--round IX. Proteins 2011 2.08
11 Remarkably similar antigen receptors among a subset of patients with chronic lymphocytic leukemia. J Clin Invest 2004 1.94
12 The PMDB Protein Model Database. Nucleic Acids Res 2006 1.94
13 Binding of the hepatitis C virus E2 glycoprotein to CD81 is strain specific and is modulated by a complex interplay between hypervariable regions 1 and 2. J Virol 2003 1.89
14 Ten simple rules for developing a short bioinformatics training course. PLoS Comput Biol 2011 1.84
15 Assessment of the assessment: evaluation of the model quality estimates in CASP10. Proteins 2013 1.60
16 PIGS: automatic prediction of antibody structures. Bioinformatics 2008 1.59
17 Evaluating the usefulness of protein structure models for molecular replacement. Bioinformatics 2005 1.58
18 Evolution of bacterial and archaeal multicomponent monooxygenases. J Mol Evol 2003 1.46
19 Evaluation of disorder predictions in CASP9. Proteins 2011 1.46
20 Evaluation of CASP8 model quality predictions. Proteins 2009 1.44
21 Evaluation of model quality predictions in CASP9. Proteins 2011 1.43
22 Evaluation of residue-residue contact predictions in CASP9. Proteins 2011 1.26
23 Assessment of protein disorder region predictions in CASP10. Proteins 2013 1.25
24 FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinformatics 2008 1.23
25 Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma. Haematologica 2010 1.17
26 Relationship between multiple sequence alignments and quality of protein comparative models. Proteins 2005 1.16
27 Automatic procedure for using models of proteins in molecular replacement. Proteins 2007 1.11
28 Evaluation of residue-residue contact prediction in CASP10. Proteins 2013 1.10
29 The prediction of protein function at CASP6. Proteins 2005 1.08
30 Structural repertoire of immunoglobulin λ light chains. Proteins 2011 1.07
31 The association of heavy and light chain variable domains in antibodies: implications for antigen specificity. FEBS J 2011 1.05
32 Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs. RNA 2007 1.03
33 The betaI/betaIII-tubulin isoforms and their complexes with antimitotic agents. Docking and molecular dynamics studies. FEBS J 2006 1.02
34 A database of immunoglobulins with integrated tools: DIGIT. Nucleic Acids Res 2011 1.01
35 FIDEA: a server for the functional interpretation of differential expression analysis. Nucleic Acids Res 2013 0.98
36 Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions. Nucleic Acids Res 2006 0.97
37 Exploring the cytochrome c folding mechanism: cytochrome c552 from thermus thermophilus folds through an on-pathway intermediate. J Biol Chem 2003 0.96
38 Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server. Bioinformatics 2013 0.96
39 An automatic method for identifying surface proteins in bacteria: SLEP. BMC Bioinformatics 2010 0.96
40 Small molecule inhibitors of histone arginine methyltransferases: homology modeling, molecular docking, binding mode analysis, and biological evaluations. J Med Chem 2007 0.95
41 Classification of proteins based on the properties of the ligand-binding site: the case of adenine-binding proteins. Proteins 2002 0.94
42 Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites. Nucleic Acids Res 2010 0.93
43 A model of the complex between the PfEMP1 malaria protein and the human ICAM-1 receptor. Proteins 2007 0.92
44 Endocytosis of synaptic ADAM10 in neuronal plasticity and Alzheimer's disease. J Clin Invest 2013 0.91
45 Ten years of predictions ... and counting. FEBS J 2005 0.91
46 Massive screening of copy number population-scale variation in Bos taurus genome. BMC Genomics 2013 0.90
47 MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships. Bioinformatics 2013 0.89
48 Improving your target-template alignment with MODalign. Bioinformatics 2012 0.89
49 Engineering stable cytoplasmic intrabodies with designed specificity. J Mol Biol 2003 0.89
50 Igs expressed by chronic lymphocytic leukemia B cells show limited binding-site structure variability. J Immunol 2013 0.88
51 Revisiting the prediction of protein function at CASP6. FEBS J 2006 0.88
52 Mutation pattern of paired immunoglobulin heavy and light variable domains in chronic lymphocytic leukemia B cells. Mol Med 2011 0.88
53 On the mechanism of chloroquine resistance in Plasmodium falciparum. PLoS One 2010 0.87
54 MAISTAS: a tool for automatic structural evaluation of alternative splicing products. Bioinformatics 2011 0.87
55 Yeast as a model of human mitochondrial tRNA base substitutions: investigation of the molecular basis of respiratory defects. RNA 2007 0.87
56 Identification of a novel putative mitogen-activated kinase cascade on human chromosome 21 by computational approaches. Bioinformatics 2006 0.87
57 Coding potential of the products of alternative splicing in human. Genome Biol 2011 0.86
58 Identification and functional characterization of the bile acid transport proteins in non-mammalian ileum and mammalian liver. Proteins 2008 0.86
59 The MEPS server for identifying protein conformational epitopes. BMC Bioinformatics 2007 0.85
60 Identification of the Schistosoma mansoni molecular target for the antimalarial drug artemether. J Chem Inf Model 2011 0.85
61 A structure-guided approach to an orthogonal estrogen-receptor-based gene switch activated by ligands suitable for in vivo studies. J Med Chem 2006 0.85
62 Modelling and molecular dynamics of the interaction between the E3 ubiquitin ligase Itch and the E2 UbcH7. Biochem Pharmacol 2008 0.84
63 Aminoacylation and conformational properties of yeast mitochondrial tRNA mutants with respiratory deficiency. RNA 2005 0.84
64 Site-directed enzymatic PEGylation of the human granulocyte colony-stimulating factor. FEBS J 2009 0.84
65 Molecular evolution of a gene cluster of serine proteases expressed in the Anopheles gambiae female reproductive tract. BMC Evol Biol 2011 0.84
66 Inhibition of endothelial cell migration and angiogenesis by a vascular endothelial growth factor receptor-1 derived peptide. Eur J Cancer 2008 0.83
67 The significance of performance ranking in CASP--response to Marti-Renom et al. Structure 2002 0.83
68 Investigation of a potential mechanism for the inhibition of SmTGR by Auranofin and its implications for Plasmodium falciparum inhibition. Biochem Biophys Res Commun 2011 0.83
69 The MoVIN server for the analysis of protein interaction networks. BMC Bioinformatics 2008 0.83
70 PICMI: mapping point mutations on genomes. Bioinformatics 2010 0.83
71 A proangiogenic peptide derived from vascular endothelial growth factor receptor-1 acts through alpha5beta1 integrin. Blood 2008 0.83
72 Analysis of hepatitis C virus hypervariable region 1 sequence from cryoglobulinemic patients and associated controls. J Virol 2007 0.83
73 An analysis of the Sargasso Sea resource and the consequences for database composition. BMC Bioinformatics 2006 0.82
74 Dissecting the structural determinants of the interaction between the human cytomegalovirus UL18 protein and the CD85j immune receptor. J Immunol 2008 0.82
75 Coordinated and reversible reduction of enzymes involved in terminal oxidative metabolism in skeletal muscle mitochondria from a riboflavin-responsive, multiple acyl-CoA dehydrogenase deficiency patient. Electrophoresis 2006 0.80
76 The evaluation of protein structure prediction results. Mol Biotechnol 2007 0.79
77 A resource for benchmarking the usefulness of protein structure models. BMC Bioinformatics 2012 0.78
78 No protein is an island. Curr Opin Struct Biol 2009 0.78
79 ProCoCoA: A quantitative approach for analyzing protein core composition. Comput Biol Chem 2012 0.78
80 Toward a better understanding of the interaction between TGF-β family members and their ALK receptors. J Mol Model 2012 0.77
81 TiPs: a database of therapeutic targets in pathogens and associated tools. Bioinformatics 2013 0.75
82 Characterization of the differences in the cyclopiazonic acid binding mode to mammalian and P. Falciparum Ca2+ pumps: a computational study. Proteins 2015 0.75
83 Horizontal and vertical growth of S. cerevisiae metabolic network. BMC Evol Biol 2011 0.75
84 Detecting mutually exclusive interactions in protein-protein interaction maps. PLoS One 2012 0.75
85 The PARIGA server for real time filtering and analysis of reciprocal BLAST results. PLoS One 2013 0.75
86 Exploiting publicly available biological and biochemical information for the discovery of novel short linear motifs. PLoS One 2011 0.75
87 Novel cinnamyl hydroxyamides and 2-aminoanilides as histone deacetylase inhibitors: apoptotic induction and cytodifferentiation activity. ChemMedChem 2011 0.75
88 The aim of the conference is to provide a scientific forum for discussing the issues and advances in computational biology. Bioinformatics 2008 0.75
89 Erratum: antibody modeling using the Prediction of ImmunoGlobulin Structure (PIGS) web server. Nat Protoc 2015 0.75
90 Simulation of urea-induced protein unfolding: a lesson from bovine β-lactoglobulin. J Mol Graph Model 2011 0.75
91 Cancer-Selective Targeting of the NF-κB Survival Pathway with GADD45β/MKK7 Inhibitors. Cancer Cell 2014 0.75
92 In memoriam. Angel Ramírez Ortiz (1966-2008). Proteins 2010 0.75