PubRank

Hans-Peter Lenhof

Author PubWeight™ 62.33‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 GeneTrail--advanced gene set enrichment analysis. Nucleic Acids Res 2007 5.10
2 BNDB - the Biochemical Network Database. BMC Bioinformatics 2007 2.75
3 Multiple sclerosis: microRNA expression profiles accurately differentiate patients with relapsing-remitting disease from healthy controls. PLoS One 2009 2.14
4 Toward the blood-borne miRNome of human diseases. Nat Methods 2011 2.14
5 GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics 2008 1.77
6 miRNAs in lung cancer - studying complex fingerprints in patient's blood cells by microarray experiments. BMC Cancer 2009 1.61
7 GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences. Nucleic Acids Res 2005 1.57
8 Complex humoral immune response against a benign tumor: frequent antibody response against specific antigens as diagnostic targets. Proc Natl Acad Sci U S A 2005 1.56
9 A dictionary on microRNAs and their putative target pathways. Nucleic Acids Res 2010 1.54
10 Computation of significance scores of unweighted Gene Set Enrichment Analyses. BMC Bioinformatics 2007 1.41
11 Specific peripheral miRNA profiles for distinguishing lung cancer from COPD. Lung Cancer 2011 1.38
12 High-throughput miRNA profiling of human melanoma blood samples. BMC Cancer 2010 1.32
13 A combinatorial approach to protein docking with flexible side chains. J Comput Biol 2002 1.29
14 A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis. Bioinformatics 2009 1.17
15 Stable serum miRNA profiles as potential tool for non-invasive lung cancer diagnosis. RNA Biol 2011 1.16
16 BALL--biochemical algorithms library 1.3. BMC Bioinformatics 2010 1.12
17 Frequent overexpression of the genes FXR1, CLAPM1 and EIF4G located on amplicon 3q26-27 in squamous cell carcinoma of the lung. Int J Cancer 2007 1.09
18 BALLView: a tool for research and education in molecular modeling. Bioinformatics 2005 1.07
19 Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana. BMC Plant Biol 2011 1.06
20 Staphylococcus aureus ClpC ATPase is a late growth phase effector of metabolism and persistence. Proteomics 2009 1.05
21 A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinformatics 2006 1.05
22 Novel autoantigens immunogenic in COPD patients. Respir Res 2009 1.01
23 Amplicons on chromosome 12q13-21 in glioblastoma recurrences. Int J Cancer 2010 1.01
24 miRTrail--a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinformatics 2012 1.01
25 Immunogenicity of autoantigens. BMC Genomics 2011 0.97
26 Genome wide expression profiling identifies specific deregulated pathways in meningioma. Int J Cancer 2009 0.96
27 Evidence for the mode of action of the highly cytotoxic Streptomyces polyketide kendomycin. Chembiochem 2007 0.95
28 A different view on DNA amplifications indicates frequent, highly complex, and stable amplicons on 12q13-21 in glioma. Mol Cancer Res 2008 0.94
29 An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res 2011 0.94
30 A new Lamarckian genetic algorithm for flexible ligand-receptor docking. J Comput Chem 2010 0.93
31 Electrostatic potentials of proteins in water: a structured continuum approach. Bioinformatics 2007 0.92
32 Toward an early diagnosis of lung cancer: an autoantibody signature for squamous cell lung carcinoma. Int J Cancer 2008 0.92
33 Novel immunogenic antigens increase classification accuracy in meningioma to 93.84%. Int J Cancer 2011 0.92
34 Identification of lung cancer with high sensitivity and specificity by blood testing. Respir Res 2010 0.91
35 Automated bond order assignment as an optimization problem. Bioinformatics 2011 0.90
36 Pattern of serum autoantibodies allows accurate distinction between a tumor and pathologies of the same organ. Clin Cancer Res 2008 0.88
37 Is there a general autoantibody signature for cancer? Eur J Cancer 2012 0.87
38 BALLView: an object-oriented molecular visualization and modeling framework. J Comput Aided Mol Des 2006 0.87
39 Increased seroreactivity to glioma-expressed antigen 2 in brain tumor patients under radiation. PLoS One 2008 0.86
40 Improving seroreactivity-based detection of glioma. Neoplasia 2009 0.86
41 Treatment-independent miRNA signature in blood of Wilms tumor patients. BMC Genomics 2012 0.86
42 NetworkTrail--a web service for identifying and visualizing deregulated subnetworks. Bioinformatics 2013 0.85
43 The Roche Cancer Genome Database (RCGDB). Hum Mutat 2010 0.85
44 Computational modeling of the sugar-lectin interaction. Adv Drug Deliv Rev 2004 0.82
45 Proteomic study of human glioblastoma multiforme tissue employing complementary two-dimensional liquid chromatography- and mass spectrometry-based approaches. J Proteome Res 2009 0.82
46 A consensus line search algorithm for molecular potential energy functions. J Comput Chem 2009 0.80
47 Integrative analysis of cancer-related data using CAP. FASEB J 2004 0.80
48 Autoantibody signature differentiates Wilms tumor patients from neuroblastoma patients. PLoS One 2011 0.79
49 Systematic permutation testing in GWAS pathway analyses: identification of genetic networks in dilated cardiomyopathy and ulcerative colitis. BMC Genomics 2014 0.79
50 The Roche Cancer Genome Database 2.0. BMC Med Genomics 2011 0.79
51 Lectin-sugar interaction. Calculated versus experimental binding energies. Eur J Biochem 2002 0.78
52 Multicenter study identified molecular blood-born protein signatures for Wilms Tumor. Int J Cancer 2011 0.76
53 SePaCS--a web-based application for classification of seroreactivity profiles. Nucleic Acids Res 2007 0.75
54 NightShift: NMR shift inference by general hybrid model training--a framework for NMR chemical shift prediction. BMC Bioinformatics 2013 0.75
55 Protein- versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples. J Chromatogr A 2010 0.75
56 A new method for the gradient-based optimization of molecular complexes. J Comput Chem 2009 0.75
57 Multiple sequence alignment with arbitrary gap costs: computing an optimal solution using polyhedral combinatorics. Bioinformatics 2002 0.75