PubRank

Michael Brudno

Author PubWeight™ 134.98‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 2004 24.40
2 The genetic landscape of a cell. Science 2010 16.52
3 ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res 2005 11.90
4 SHRiMP: accurate mapping of short color-space reads. PLoS Comput Biol 2009 11.24
5 Computational methods for discovering structural variation with next-generation sequencing. Nat Methods 2009 7.20
6 Savant: genome browser for high-throughput sequencing data. Bioinformatics 2010 6.51
7 The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res 2013 5.66
8 Characterization of evolutionary rates and constraints in three Mammalian genomes. Genome Res 2004 4.45
9 SHRiMP2: sensitive yet practical SHort Read Mapping. Bioinformatics 2011 3.82
10 Genome variation discovery with high-throughput sequencing data. Brief Bioinform 2010 3.74
11 Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes. Genome Res 2003 3.52
12 MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions. Nat Methods 2009 3.15
13 A robust framework for detecting structural variations in a genome. Bioinformatics 2008 3.03
14 Conservation of core gene expression in vertebrate tissues. J Biol 2009 2.84
15 Detecting copy number variation with mated short reads. Genome Res 2010 2.75
16 Multiple whole-genome alignments without a reference organism. Genome Res 2009 2.31
17 Maximum likelihood genome assembly. J Comput Biol 2009 2.24
18 Extreme genomic variation in a natural population. Proc Natl Acad Sci U S A 2007 2.24
19 PhenoTips: patient phenotyping software for clinical and research use. Hum Mutat 2013 2.04
20 Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Bioinformatics 2004 1.97
21 A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome. Genome Biol 2007 1.82
22 PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants. Bioinformatics 2012 1.65
23 iReckon: simultaneous isoform discovery and abundance estimation from RNA-seq data. Genome Res 2012 1.63
24 Savant Genome Browser 2: visualization and analysis for population-scale genomics. Nucleic Acids Res 2012 1.32
25 AGenDA: homology-based gene prediction. Bioinformatics 2003 1.08
26 Extensive parallelism in protein evolution. Biol Direct 2007 1.00
27 SCARPA: scaffolding reads with practical algorithms. Bioinformatics 2012 1.00
28 Detecting Alu insertions from high-throughput sequencing data. Nucleic Acids Res 2013 0.93
29 Phenotyping: targeting genotype's rich cousin for diagnosis. J Paediatr Child Health 2014 0.89
30 VARiD: a variation detection framework for color-space and letter-space platforms. Bioinformatics 2010 0.86
31 Genomic sequencing and characterization of cynomolgus macaque cytomegalovirus. J Virol 2011 0.86
32 Polymorphism due to multiple amino acid substitutions at a codon site within Ciona savignyi. Genetics 2008 0.84
33 Comparative genomics of transcriptional regulation in yeasts and its application to identification of a candidate alpha-isopropylmalate transporter. J Bioinform Comput Biol 2006 0.82
34 Identification of deleterious synonymous variants in human genomes. Bioinformatics 2013 0.81
35 Mixture model for sub-phenotyping in GWAS. Pac Symp Biocomput 2012 0.81
36 PhenoBlocks: Phenotype Comparison Visualizations. IEEE Trans Vis Comput Graph 2016 0.76
37 PhenoStacks: Cross-Sectional Cohort Phenotype Comparison Visualizations. IEEE Trans Vis Comput Graph 2016 0.76
38 Identification of deleterious synonymous variants in human genomes. Bioinformatics 2014 0.75
39 PhenoLines: Phenotype Comparison Visualizations for Disease Subtyping via Topic Models. IEEE Trans Vis Comput Graph 2017 0.75