Published in J Mol Evol on August 01, 2007
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Predicting functional divergence in protein evolution by site-specific rate shifts. Trends Biochem Sci (2002) 1.77
TOLL-like receptors linking innate and adaptive immune response. Vet Immunol Immunopathol (2003) 1.70
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Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes. J Mol Evol (2002) 0.82
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A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nat Genet (2002) 3.39
Expression divergence between duplicate genes. Trends Genet (2005) 2.69
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). OMICS (2006) 2.57
Induced gene expression in human brain after the split from chimpanzee. Trends Genet (2003) 2.19
Predicting functional divergence in protein evolution by site-specific rate shifts. Trends Biochem Sci (2002) 1.77
Linkage disequilibrium in related breeding lines of chickens. Genetics (2007) 1.66
Evolution of alternative splicing after gene duplication. Genome Res (2005) 1.55
Breeding value prediction for production traits in layer chickens using pedigree or genomic relationships in a reduced animal model. Genet Sel Evol (2011) 1.55
Intron gain and loss in segmentally duplicated genes in rice. Genome Biol (2006) 1.48
Identification of conserved gene structures and carboxy-terminal motifs in the Myb gene family of Arabidopsis and Oryza sativa L. ssp. indica. Genome Biol (2004) 1.48
How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution? Trends Genet (2004) 1.38
Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. BMC Evol Biol (2010) 1.28
Characterization of paralogous protein families in rice. BMC Plant Biol (2008) 1.19
Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations. BMC Genomics (2009) 1.13
The origin and evolution of enamel mineralization genes. Cells Tissues Organs (2007) 1.12
Predicting the proportion of essential genes in mouse duplicates based on biased mouse knockout genes. J Mol Evol (2008) 1.11
Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control. Genome Biol (2011) 1.09
Identification of copy number variation hotspots in human populations. Am J Hum Genet (2010) 1.08
Chicken heterophil extracellular traps (HETs): novel defense mechanism of chicken heterophils. Vet Immunol Immunopathol (2008) 1.07
Cold stress equally enhances in vivo pro-inflammatory cytokine gene expression in chicken lines divergently selected for antibody responses. Dev Comp Immunol (2005) 1.06
Ordered origin of the typical two- and three-repeat Myb genes. Gene (2004) 1.04
A preliminary analysis of gene pleiotropy estimated from protein sequences. J Exp Zool B Mol Dev Evol (2010) 1.03
Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. BMC Bioinformatics (2004) 1.01
Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin. BMC Genomics (2010) 1.00
Avian models with spontaneous autoimmune diseases. Adv Immunol (2006) 0.98
A bootstrap based analysis pipeline for efficient classification of phylogenetically related animal miRNAs. BMC Genomics (2007) 0.96
Novel PAX6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation. Genome Res (2002) 0.96
Analyses of Five gallinacin genes and the Salmonella enterica serovar Enteritidis response in poultry. Infect Immun (2006) 0.95
Comparison of methods for analysis of selective genotyping survival data. Genet Sel Evol (2006) 0.94
Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments. BMC Syst Biol (2015) 0.94
Natural history and functional divergence of protein tyrosine kinases. Gene (2003) 0.93
Functional divergence after gene duplication and sequence-structure relationship: a case study of G-protein alpha subunits. J Exp Zool B Mol Dev Evol (2007) 0.92
Cross-correlation frequency resolved optical gating analysis of broadband continuum generation in photonic crystal fiber: simulations and experiments. Opt Express (2002) 0.92
Time squared: repeated measures on phylogenies. Mol Biol Evol (2006) 0.91
Genome plasticity and systems evolution in Streptomyces. BMC Bioinformatics (2012) 0.91
Identification of functional mutations in GATA4 in patients with congenital heart disease. PLoS One (2013) 0.91
Breed effect on early cytokine mRNA expression in spleen and cecum of chickens with and without Salmonella enteritidis infection. Dev Comp Immunol (2006) 0.89
Avian-specific TLRs and downstream effector responses to CpG-induction in chicken macrophages. Dev Comp Immunol (2010) 0.89
Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res (2015) 0.88
Association of MHC class I and class II gene polymorphisms with vaccine or challenge response to Salmonella enteritidis in young chicks. Immunogenetics (2002) 0.88
Extremely simple single-prism ultrashort- pulse compressor. Opt Express (2006) 0.88
Re-annotation is an essential step in systems biology modeling of functional genomics data. PLoS One (2010) 0.88
Carrier-envelope-phase-stable, 1.2 mJ, 1.5 cycle laser pulses at 2.1 μm. Opt Lett (2012) 0.87
RNA-seq analysis of broiler liver transcriptome reveals novel responses to high ambient temperature. BMC Genomics (2014) 0.87
Evolution of RNases in leaf monkeys: being parallel gene duplications or parallel gene conversions is a problem of molecular phylogeny. Mol Phylogenet Evol (2008) 0.86
Spleen transcriptome response to infection with avian pathogenic Escherichia coli in broiler chickens. BMC Genomics (2011) 0.86
Genome factor and gene pleiotropy hypotheses in protein evolution. Biol Direct (2010) 0.86
Chicken heterophils from commercially selected and non-selected genetic lines express cytokines differently after in vitro exposure to Salmonella enteritidis. Vet Immunol Immunopathol (2009) 0.86
Phylogenetic position of the enigmatic genus Psilorhynchus (Ostariophysi: Cypriniformes): evidence from the mitochondrial genome. Mol Phylogenet Evol (2007) 0.85
The -omics Era- Toward a Systems-Level Understanding of Streptomyces. Curr Genomics (2011) 0.85
Improved prediction of malaria degradomes by supervised learning with SVM and profile kernel. Genetica (2008) 0.85
Revisit on the evolutionary relationship between alternative splicing and gene duplication. Gene (2012) 0.84
Duplicated Spot 14 genes in the chicken: characterization and identification of polymorphisms associated with abdominal fat traits. Gene (2004) 0.84
Maximum likelihood for genome phylogeny on gene content. Stat Appl Genet Mol Biol (2004) 0.84
Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum. BMC Syst Biol (2012) 0.84
Pulse-front tilt caused by spatial and temporal chirp. Opt Express (2004) 0.84
Association of INOS, TRAIL, TGF-beta2, TGF-beta3, and IgL genes with response to Salmonella enteritidis in poultry. Genet Sel Evol (2003) 0.84
NLRC5 knockdown in chicken macrophages alters response to LPS and poly (I:C) stimulation. BMC Vet Res (2012) 0.83
Frequency-resolved optical gating and single-shot spectral measurements reveal fine structure in microstructure-fiber continuum. Opt Lett (2002) 0.83
A simple method for phylogenomic inference using the information of gene content of genomes. Gene (2008) 0.83
Deep sequencing-based transcriptome analysis of chicken spleen in response to avian pathogenic Escherichia coli (APEC) infection. PLoS One (2012) 0.83
Multiple genome rearrangement by reversals. Pac Symp Biocomput (2002) 0.82
Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins. BMC Genomics (2010) 0.82
Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes. J Mol Evol (2002) 0.82
Algorithms for multiple genome rearrangement by signed reversals. Pac Symp Biocomput (2003) 0.82
Core genome components and lineage specific expansions in malaria parasites plasmodium. BMC Genomics (2010) 0.82
Experimental studies of the coherence of microstructure-fiber supercontinuum. Opt Express (2003) 0.82
Tissue-driven hypothesis with Gene Ontology (GO) analysis. Ann Biomed Eng (2007) 0.82
A systematic analysis of miRNA transcriptome in Marek's disease virus-induced lymphoma reveals novel and differentially expressed miRNAs. PLoS One (2012) 0.81
Chicken MHC class I and II gene effects on antibody response kinetics in adult chickens. Immunogenetics (2003) 0.81
Reduced nitric oxide production and iNOS mRNA expression in IFN-gamma-stimulated chicken macrophages transfected with iNOS siRNAs. Vet Immunol Immunopathol (2008) 0.81
Expression of the zebrafish CD133/prominin1 genes in cellular proliferation zones in the embryonic central nervous system and sensory organs. Dev Dyn (2010) 0.81
Further statistical analysis for genome-wide expression evolution in primate brain/liver/fibroblast tissues. Hum Genomics (2004) 0.81
Integrated genomic approaches to enhance genetic resistance in chickens. Annu Rev Anim Biosci (2013) 0.81
Treatment of upper limb lymphedema with combination of liposuction, myocutaneous flap transfer, and lymph-fascia grafting: a preliminary study. Microsurgery (2009) 0.80
Genetic control of chicken heterophil function in advanced intercross lines: associations with novel and with known Salmonella resistance loci and a likely mechanism for cell death in extracellular trap production. Immunogenetics (2011) 0.80
Non-electrophoretic differential detergent fractionation proteomics using frozen whole organs. Rapid Commun Mass Spectrom (2007) 0.80
Identification of essential amino acid changes in paired domain evolution using a novel combination of evolutionary analysis and in vitro and in vivo studies. Mol Biol Evol (2002) 0.80
Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape. J Exp Zool B Mol Dev Evol (2009) 0.80
The general theory of first-order spatio-temporal distortions of Gaussian pulses and beams. Opt Express (2005) 0.80
Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis. BMC Syst Biol (2012) 0.79
Comparative study of human mitochondrial proteome reveals extensive protein subcellular relocalization after gene duplications. BMC Evol Biol (2009) 0.79
Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective. BMC Genomics (2009) 0.79
Proteases in malaria parasites - a phylogenomic perspective. Curr Genomics (2011) 0.79
Molecular and metabolic profiles suggest that increased lipid catabolism in adipose tissue contributes to leanness in domestic chickens. Physiol Genomics (2014) 0.78
Age distribution patterns of human gene families: divergent for Gene Ontology categories and concordant between different subcellular localizations. Mol Genet Genomics (2013) 0.78
Endothelial cell culture of intramuscular venous malformation and its invasive behavior related to matrix metalloproteinase-9. Plast Reconstr Surg (2009) 0.78
Predominant gain of promoter TATA box after gene duplication associated with stress responses. Mol Biol Evol (2011) 0.78
DNA methylome in spleen of avian pathogenic Escherichia coli-challenged broilers and integration with mRNA expression. Sci Rep (2014) 0.78
Salmonella Enteritidis-induced alteration of inflammatory CXCL chemokine messenger-RNA expression and histologic changes in the ceca of infected chicks. Avian Dis (2008) 0.77
Histone modification pattern evolution after yeast gene duplication. BMC Evol Biol (2012) 0.77
Mapping and genotypic analysis of the NK-lysin gene in chicken. Genet Sel Evol (2014) 0.77
A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum. BMC Bioinformatics (2013) 0.77
Proportion of circulating chicken heterophils and CXCLi2 expression in response to Salmonella enteritidis are affected by genetic line and immune modulating diet. Vet Immunol Immunopathol (2011) 0.77
SplitTester: software to identify domains responsible for functional divergence in protein family. BMC Bioinformatics (2005) 0.77
Impacts of Salmonella enteritidis infection on liver transcriptome in broilers. Genesis (2013) 0.77