Published in Virology on August 31, 2007
Molecular ecology and natural history of simian foamy virus infection in wild-living chimpanzees. PLoS Pathog (2008) 1.92
Restriction of foamy viruses by primate Trim5alpha. J Virol (2008) 1.19
Novel functions of prototype foamy virus Gag glycine- arginine-rich boxes in reverse transcription and particle morphogenesis. J Virol (2010) 1.17
Molecular biology of foamy viruses. Med Microbiol Immunol (2010) 1.16
Species-specific inhibition of foamy viruses from South American monkeys by New World Monkey TRIM5{alpha} proteins. J Virol (2010) 0.97
Accuracy estimation of foamy virus genome copying. Retrovirology (2009) 0.92
Discovery of prosimian and afrotherian foamy viruses and potential cross species transmissions amidst stable and ancient mammalian co-evolution. Retrovirology (2014) 0.91
Two distinct variants of simian foamy virus in naturally infected mandrills (Mandrillus sphinx) and cross-species transmission to humans. Retrovirology (2010) 0.89
Non-simian foamy viruses: molecular virology, tropism and prevalence and zoonotic/interspecies transmission. Viruses (2013) 0.87
The foamy virus Gag proteins: what makes them different? Viruses (2013) 0.85
Identification and characterization of highly divergent simian foamy viruses in a wide range of new world primates from Brazil. PLoS One (2013) 0.85
New World simian foamy virus infections in vivo and in vitro. J Virol (2013) 0.84
AZT-resistant foamy virus. Virology (2007) 0.83
Wide distribution and ancient evolutionary history of simian foamy viruses in New World primates. Retrovirology (2015) 0.80
Simian foamy virus in non-human primates and cross-species transmission to humans in Gabon: an emerging zoonotic disease in central Africa? Viruses (2013) 0.80
An expanded search for simian foamy viruses (SFV) in Brazilian New World primates identifies novel SFV lineages and host age-related infections. Retrovirology (2015) 0.75
Foamy-like endogenous retroviruses are extensive and abundant in teleosts. Virus Evol (2016) 0.75
A metagenomic survey of microbes in honey bee colony collapse disorder. Science (2007) 11.72
The genomic and epidemiological dynamics of human influenza A virus. Nature (2008) 10.26
Unifying the epidemiological and evolutionary dynamics of pathogens. Science (2004) 8.33
Rates of evolutionary change in viruses: patterns and determinants. Nat Rev Genet (2008) 6.79
Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis. J Mol Evol (2002) 5.24
Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection. J Exp Med (2004) 4.52
Cross-species virus transmission and the emergence of new epidemic diseases. Microbiol Mol Biol Rev (2008) 4.46
The causes and consequences of HIV evolution. Nat Rev Genet (2004) 4.34
The evolutionary genetics and emergence of avian influenza viruses in wild birds. PLoS Pathog (2008) 4.17
The evolution of epidemic influenza. Nat Rev Genet (2007) 4.12
New world bats harbor diverse influenza A viruses. PLoS Pathog (2013) 4.10
Host species barriers to influenza virus infections. Science (2006) 3.94
Stochastic processes are key determinants of short-term evolution in influenza a virus. PLoS Pathog (2006) 3.82
Selection-driven evolution of emergent dengue virus. Mol Biol Evol (2003) 3.27
Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918. PLoS Pathog (2008) 3.25
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nat Genet (2012) 3.22
Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates. J Virol (2010) 3.18
Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus. Biol Direct (2006) 3.18
Population structure and evolution of the Bacillus cereus group. J Bacteriol (2004) 3.08
A single positively selected West Nile viral mutation confers increased virogenesis in American crows. Nat Genet (2007) 3.02
High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc Natl Acad Sci U S A (2004) 2.83
Trends in patterns of dengue transmission over 4 years in a pediatric cohort study in Nicaragua. J Infect Dis (2010) 2.80
Phylogenetic relationships and differential selection pressures among genotypes of dengue-2 virus. Virology (2002) 2.75
Genomic epidemiology of a dengue virus epidemic in urban Singapore. J Virol (2009) 2.74
Ancient co-speciation of simian foamy viruses and primates. Nature (2005) 2.71
The genesis and spread of reassortment human influenza A/H3N2 viruses conferring adamantane resistance. Mol Biol Evol (2007) 2.59
Recombination in evolutionary genomics. Annu Rev Genet (2002) 2.54
Phylogenetic analysis reveals the global migration of seasonal influenza A viruses. PLoS Pathog (2007) 2.52
Distribution of surface protein variants among hyperinvasive meningococci: implications for vaccine design. Infect Immun (2004) 2.44
Invasion and maintenance of dengue virus type 2 and type 4 in the Americas. J Virol (2005) 2.44
Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes. Science (2006) 2.43
Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses. J Gen Virol (2003) 2.43
The molecular epidemiology of dengue virus serotype 4 in Bangkok, Thailand. Virology (2004) 2.42
Avian influenza virus exhibits rapid evolutionary dynamics. Mol Biol Evol (2006) 2.41
Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence. J Virol (2005) 2.35
Phylogenetic evidence for deleterious mutation load in RNA viruses and its contribution to viral evolution. Mol Biol Evol (2007) 2.34
The population genetics and evolutionary epidemiology of RNA viruses. Nat Rev Microbiol (2004) 2.26
The origin and phylogeography of dog rabies virus. J Gen Virol (2008) 2.23
A peptide inhibitor of HIV-1 assembly in vitro. Nat Struct Mol Biol (2005) 2.21
The Mason-Pfizer monkey virus PPPY and PSAP motifs both contribute to virus release. J Virol (2003) 2.19
Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia. PLoS Negl Trop Dis (2010) 2.17
Inferring the rate and time-scale of dengue virus evolution. Mol Biol Evol (2003) 2.11
Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States. PLoS Pathog (2008) 2.09
Molecular evolution of dengue 2 virus in Puerto Rico: positive selection in the viral envelope accompanies clade reintroduction. J Gen Virol (2006) 2.07
Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans. Proc Natl Acad Sci U S A (2011) 2.06
The extent of codon usage bias in human RNA viruses and its evolutionary origin. Virus Res (2003) 2.06
Hantavirus evolution in relation to its rodent and insectivore hosts: no evidence for codivergence. Mol Biol Evol (2008) 2.04
Global distribution of novel rhinovirus genotype. Emerg Infect Dis (2008) 2.03
Why do RNA viruses recombine? Nat Rev Microbiol (2011) 2.02
Genetic characterization of tick-borne flaviviruses: new insights into evolution, pathogenetic determinants and taxonomy. Virology (2006) 2.01
Evolutionary history and dynamics of dog rabies virus in western and central Africa. J Gen Virol (2009) 1.98
Genomic diversity and evolution of the lyssaviruses. PLoS One (2008) 1.98
Sustained transmission of dengue virus type 1 in the Pacific due to repeated introductions of different Asian strains. Virology (2004) 1.94
Bats are a major natural reservoir for hepaciviruses and pegiviruses. Proc Natl Acad Sci U S A (2013) 1.93
Mixed infection and the genesis of influenza virus diversity. J Virol (2009) 1.88
Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission. PLoS Pathog (2011) 1.87
Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health. Nat Rev Microbiol (2011) 1.86
Major biological obstacles for persistent cell-based regeneration of articular cartilage. Arthritis Res Ther (2007) 1.85
Host and viral features of human dengue cases shape the population of infected and infectious Aedes aegypti mosquitoes. Proc Natl Acad Sci U S A (2013) 1.84
The evolutionary dynamics of human influenza B virus. J Mol Evol (2008) 1.84
Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog (2010) 1.83
Phylogenetic evidence for adaptive evolution of dengue viruses in nature. J Gen Virol (2002) 1.82
Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses. Mol Biol Evol (2010) 1.80
Isolation of a new strain of the flavivirus cell fusing agent virus in a natural mosquito population from Puerto Rico. J Gen Virol (2006) 1.79
Different evolutionary trajectories of European avian-like and classical swine H1N1 influenza A viruses. J Virol (2009) 1.79
A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors. Proc Natl Acad Sci U S A (2014) 1.75
Intra- and interhost evolutionary dynamics of equine influenza virus. J Virol (2010) 1.75
RNA viruses in hymenopteran pollinators: evidence of inter-Taxa virus transmission via pollen and potential impact on non-Apis hymenopteran species. PLoS One (2010) 1.73
The hepatitis C virus epidemic among injecting drug users. Infect Genet Evol (2005) 1.70
Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus. J Virol (2007) 1.68
Spatial dynamics of human-origin H1 influenza A virus in North American swine. PLoS Pathog (2011) 1.68
Improved primate foamy virus vectors and packaging constructs. J Virol (2002) 1.65
Origins, evolution, and vector/host coadaptations within the genus Flavivirus. Adv Virus Res (2003) 1.65
Comparative analysis reveals frequent recombination in the parvoviruses. J Gen Virol (2007) 1.64
Loss of viral control in early HIV-1 infection is temporally associated with sequential escape from CD8+ T cell responses and decrease in HIV-1-specific CD4+ and CD8+ T cell frequencies. J Infect Dis (2004) 1.64
Evolution of novel reassortant A/H3N2 influenza viruses in North American swine and humans, 2009-2011. J Virol (2012) 1.64
Homologous recombination is very rare or absent in human influenza A virus. J Virol (2008) 1.63
Reduced positive selection in vector-borne RNA viruses. Mol Biol Evol (2002) 1.62
Phylogenetic evidence for frequent positive selection and recombination in the meningococcal surface antigen PorB. Mol Biol Evol (2002) 1.60
Out of Africa: a molecular perspective on the introduction of yellow fever virus into the Americas. PLoS Pathog (2007) 1.60
Phylogeny and origins of hantaviruses harbored by bats, insectivores, and rodents. PLoS Pathog (2013) 1.58
Comparison of three retroviral vector systems for transduction of nonobese diabetic/severe combined immunodeficiency mice repopulating human CD34+ cord blood cells. Hum Gene Ther (2003) 1.58
Selection for robustness in mutagenized RNA viruses. PLoS Genet (2007) 1.58
A revised evolutionary history of hepatitis B virus (HBV). J Mol Evol (2002) 1.57
Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses. J Mol Evol (2006) 1.56
Global transmission of influenza viruses from humans to swine. J Gen Virol (2012) 1.55
Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts. Virology (2009) 1.54
Evolutionary processes among sylvatic dengue type 2 viruses. J Virol (2007) 1.54
The evolutionary and epidemiological dynamics of the paramyxoviridae. J Mol Evol (2008) 1.53
Isolation of a novel species of flavivirus and a new strain of Culex flavivirus (Flaviviridae) from a natural mosquito population in Uganda. J Gen Virol (2009) 1.53
The evolution of large DNA viruses: combining genomic information of viruses and their hosts. Trends Microbiol (2004) 1.52
Phylogeography of recently emerged DENV-2 in southern Viet Nam. PLoS Negl Trop Dis (2010) 1.52
Real-time PCR for diagnosis of human bocavirus infections and phylogenetic analysis. J Clin Microbiol (2007) 1.52
Comparative population dynamics of HIV-1 subtypes B and C: subtype-specific differences in patterns of epidemic growth. Infect Genet Evol (2004) 1.52
Phylogeography, population dynamics, and molecular evolution of European bat lyssaviruses. J Virol (2005) 1.51
Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds. Ecol Lett (2011) 1.49
Positively charged amino acid substitutions in the e2 envelope glycoprotein are associated with the emergence of venezuelan equine encephalitis virus. J Virol (2002) 1.49
Phylogeography and evolutionary history of reassortant H9N2 viruses with potential human health implications. J Virol (2011) 1.48
The genomic rate of molecular adaptation of the human influenza A virus. Mol Biol Evol (2011) 1.48
Is the quasispecies concept relevant to RNA viruses? J Virol (2002) 1.48