Published in Biophys J on September 07, 2007
Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein. PLoS Comput Biol (2009) 1.13
Protein linewidth and solvent dynamics in frozen solution NMR. PLoS One (2012) 0.90
Interfacial water at protein surfaces: wide-line NMR and DSC characterization of hydration in ubiquitin solutions. Biophys J (2009) 0.90
The effect of complex solvents on the structure and dynamics of protein solutions: The case of Lysozyme in trehalose/water mixtures. Eur Phys J E Soft Matter (2013) 0.78
Nanosecond motions in proteins impose bounds on the timescale distributions of local dynamics. Biophys J (2009) 0.75
The Protein Data Bank. Nucleic Acids Res (2000) 187.10
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
Scalable molecular dynamics with NAMD. J Comput Chem (2005) 59.49
Protein states and proteinquakes. Proc Natl Acad Sci U S A (1985) 10.43
The role of solvent viscosity in the dynamics of protein conformational changes. Science (1992) 4.52
How soft is a protein? A protein dynamics force constant measured by neutron scattering. Science (2000) 3.62
Solvent mobility and the protein 'glass' transition. Nat Struct Biol (2000) 2.83
Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution. Proc Natl Acad Sci U S A (2002) 2.61
Bulk-solvent and hydration-shell fluctuations, similar to alpha- and beta-fluctuations in glasses, control protein motions and functions. Proc Natl Acad Sci U S A (2004) 2.54
Role of protein-water hydrogen bond dynamics in the protein dynamical transition. Phys Rev Lett (2002) 2.00
Thermal properties of water in myoglobin crystals and solutions at subzero temperatures. Biophys J (1986) 1.96
Protein reaction kinetics in a room-temperature glass. Science (1995) 1.77
Native proteins are surface-molten solids: application of the Lindemann criterion for the solid versus liquid state. J Mol Biol (1999) 1.68
Solvent dependence of dynamic transitions in protein solutions. Proc Natl Acad Sci U S A (2000) 1.57
Effect of the environment on the protein dynamical transition: a neutron scattering study. Biophys J (2002) 1.54
The lubricant of life: a proposal that solvent water promotes extremely fast conformational fluctuations in mobile heteropolypeptide structure. Biochemistry (1997) 1.42
The X-ray crystal structure of the Trichoderma reesei family 12 endoglucanase 3, Cel12A, at 1.9 A resolution. J Mol Biol (2001) 1.41
Protein flexibility from the dynamical transition: a force constant analysis. Biophys J (2001) 1.38
Effect of glycerol on the interactions and solubility of bovine pancreatic trypsin inhibitor. Biophys J (1999) 1.30
Hydrogen atoms in proteins: positions and dynamics. Proc Natl Acad Sci U S A (2003) 1.12
Controlling the protein dynamical transition with sugar-based bioprotectant matrices: a neutron scattering study. Biophys J (2006) 1.12
Role of hydrogen bonds in the fast dynamics of binary glasses of trehalose and glycerol: a molecular dynamics simulation study. J Chem Phys (2005) 1.02
Proteins: paradigms of complexity. Proc Natl Acad Sci U S A (2002) 1.00
Structure, dynamics, and energetics of water at the surface of a small globular protein: a molecular dynamics simulation. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.99
Relaxation kinetics and the glassiness of proteins: the case of bovine pancreatic trypsin inhibitor. Biophys J (2002) 0.94
Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins. Gene (2007) 0.90
Single-particle tracking: Brownian dynamics of viscoelastic materials. Biophys J (2000) 0.89
Relaxation kinetics and the glassiness of native proteins: coupling of timescales. Biophys J (2004) 0.89
Coupling between lysozyme and glycerol dynamics: microscopic insights from molecular-dynamics simulations. J Chem Phys (2005) 0.86
Coupling between lysozyme and trehalose dynamics: microscopic insights from molecular-dynamics simulations. J Chem Phys (2006) 0.86
Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein. PLoS Comput Biol (2009) 1.13
Relaxation kinetics and the glassiness of proteins: the case of bovine pancreatic trypsin inhibitor. Biophys J (2002) 0.94
Relaxation kinetics and the glassiness of native proteins: coupling of timescales. Biophys J (2004) 0.89
Network-based models as tools hinting at nonevident protein functionality. Annu Rev Biophys (2012) 0.87
Designing molecular dynamics simulations to shift populations of the conformational states of calmodulin. PLoS Comput Biol (2013) 0.82
How orientational order governs collectivity of folded proteins. Proteins (2010) 0.82
Calmodulin readily switches conformation upon protonating high pKa acidic residues. J Phys Chem B (2012) 0.81
Subtle pH differences trigger single residue motions for moderating conformations of calmodulin. J Chem Phys (2011) 0.80
Assortative mixing in close-packed spatial networks. PLoS One (2010) 0.78
Protonation states of remote residues affect binding-release dynamics of the ligand but not the conformation of apo ferric binding protein. J Phys Chem B (2014) 0.76
Nanosecond motions in proteins impose bounds on the timescale distributions of local dynamics. Biophys J (2009) 0.75
Detailed molecular dynamics simulations of human transferrin provide insights into iron release dynamics at serum and endosomal pH. J Biol Inorg Chem (2015) 0.75
Increased substrate affinity in the Escherichia coli L28R dihydrofolate reductase mutant causes trimethoprim resistance. Phys Chem Chem Phys (2017) 0.75