Published in J Biomol NMR on October 09, 2007
Accurate characterization of weak macromolecular interactions by titration of NMR residual dipolar couplings: application to the CD2AP SH3-C:ubiquitin complex. Nucleic Acids Res (2009) 0.92
Multi-timescale conformational dynamics of the SH3 domain of CD2-associated protein using NMR spectroscopy and accelerated molecular dynamics. Angew Chem Int Ed Engl (2012) 0.84
Solution structure, dynamics and thermodynamics of the three SH3 domains of CD2AP. J Biomol NMR (2011) 0.84
Differential Recognition Preferences of the Three Src Homology 3 (SH3) Domains from the Adaptor CD2-associated Protein (CD2AP) and Direct Association with Ras and Rab Interactor 3 (RIN3). J Biol Chem (2015) 0.77
Characterizing weak protein-protein complexes by NMR residual dipolar couplings. Eur Biophys J (2011) 0.76
Structure of the kidney slit diaphragm adapter protein CD2-associated protein as determined with electron microscopy. J Am Soc Nephrol (2014) 0.76
Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr (1998) 169.28
NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR (1995) 93.94
MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graph (1996) 39.73
AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR (1996) 29.55
Calculation of protein extinction coefficients from amino acid sequence data. Anal Biochem (1989) 29.15
WHAT IF: a molecular modeling and drug design program. J Mol Graph (1990) 24.35
NMR View: A computer program for the visualization and analysis of NMR data. J Biomol NMR (1994) 22.42
Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol (1997) 15.40
Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation. Biochemistry (1994) 13.94
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol (2002) 11.20
SH3 domains: complexity in moderation. J Cell Sci (2001) 4.54
A novel adaptor protein orchestrates receptor patterning and cytoskeletal polarity in T-cell contacts. Cell (1998) 4.21
RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins (2005) 3.41
Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data. J Biomol NMR (2000) 3.06
PREDITOR: a web server for predicting protein torsion angle restraints. Nucleic Acids Res (2006) 2.00
CD2-associated protein and glomerular disease. Lancet (2003) 1.10
Cbl promotes clustering of endocytic adaptor proteins. Nat Struct Mol Biol (2005) 1.05
Atypical polyproline recognition by the CMS N-terminal Src homology 3 domain. J Biol Chem (2006) 0.97
Solution structure of the second SH3 domain of human CMS and a newly identified binding site at the C-terminus of c-Cbl. Biochim Biophys Acta (2006) 0.77
The nisin-lipid II complex reveals a pyrophosphate cage that provides a blueprint for novel antibiotics. Nat Struct Mol Biol (2004) 2.36
The structure of the human ERCC1/XPF interaction domains reveals a complementary role for the two proteins in nucleotide excision repair. Structure (2005) 1.80
The alpha-to-beta conformational transition of Alzheimer's Abeta-(1-42) peptide in aqueous media is reversible: a step by step conformational analysis suggests the location of beta conformation seeding. Chembiochem (2006) 1.70
Atomic-resolution three-dimensional structure of HET-s(218-289) amyloid fibrils by solid-state NMR spectroscopy. J Am Chem Soc (2010) 1.69
Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity. Cell (2010) 1.65
Mycoredoxin-1 is one of the missing links in the oxidative stress defence mechanism of Mycobacteria. Mol Microbiol (2012) 1.61
The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein. Structure (2005) 1.25
NMR study of mersacidin and lipid II interaction in dodecylphosphocholine micelles. Conformational changes are a key to antimicrobial activity. J Biol Chem (2003) 1.25
Electron cryotomography of measles virus reveals how matrix protein coats the ribonucleocapsid within intact virions. Proc Natl Acad Sci U S A (2011) 1.13
DWNN, a novel ubiquitin-like domain, implicates RBBP6 in mRNA processing and ubiquitin-like pathways. BMC Struct Biol (2006) 1.05
Isolation and structural characterization of epilancin 15X, a novel lantibiotic from a clinical strain of Staphylococcus epidermidis. FEBS Lett (2005) 1.03
Efficient IgM assembly and secretion require the plasma cell induced endoplasmic reticulum protein pERp1. Proc Natl Acad Sci U S A (2009) 1.02
Integration of fragment screening and library design. Drug Discov Today (2007) 1.01
Structure of the DNA-bound BRCA1 C-terminal region from human replication factor C p140 and model of the protein-DNA complex. J Biol Chem (2010) 0.95
Mapping the encounter state of a transient protein complex by PRE NMR spectroscopy. J Biomol NMR (2010) 0.95
Mapping the targeted membrane pore formation mechanism by solution NMR: the nisin Z and lipid II interaction in SDS micelles. Biochemistry (2002) 0.94
Structure and DNA binding of the human Rtf1 Plus3 domain. Structure (2008) 0.92
Accurate characterization of weak macromolecular interactions by titration of NMR residual dipolar couplings: application to the CD2AP SH3-C:ubiquitin complex. Nucleic Acids Res (2009) 0.92
The high-resolution NMR structure of the R21A Spc-SH3:P41 complex: understanding the determinants of binding affinity by comparison with Abl-SH3. BMC Struct Biol (2007) 0.90
Mapping the population of protein conformational energy sub-states from NMR dipolar couplings. Angew Chem Int Ed Engl (2013) 0.89
A model for the aggregation of the acylphosphatase from Sulfolobus solfataricus in its native-like state. Biochim Biophys Acta (2008) 0.89
Rapid formation of non-native contacts during the folding of HPr revealed by real-time photo-CIDNP NMR and stopped-flow fluorescence experiments. J Mol Biol (2003) 0.89
Redox-dependent conformational changes in eukaryotic cytochromes revealed by paramagnetic NMR spectroscopy. J Biomol NMR (2012) 0.87
Application of fragment-based drug discovery to membrane proteins: identification of ligands of the integral membrane enzyme DsbB. Chem Biol (2010) 0.87
CD2-associated protein is widely expressed and differentially regulated during embryonic development. Differentiation (2008) 0.87
Solution structure of RING finger-like domain of retinoblastoma-binding protein-6 (RBBP6) suggests it functions as a U-box. J Biol Chem (2011) 0.87
Lack of negative charge in the E46Q mutant of photoactive yellow protein prevents partial unfolding of the blue-shifted intermediate. Biochemistry (2003) 0.87
Solution structure of a chemosensory protein from the desert locust Schistocerca gregaria. Biochemistry (2006) 0.87
Solution structure of the human ubiquitin-specific protease 15 DUSP domain. J Biol Chem (2005) 0.86
Electron transfer interactome of cytochrome C. PLoS Comput Biol (2012) 0.85
Interaction of endogenous nephrin and CD2-associated protein in mouse epithelial M-1 cell line. J Am Soc Nephrol (2002) 0.85
Target immobilization as a strategy for NMR-based fragment screening: comparison of TINS, STD, and SPR for fragment hit identification. J Biomol Screen (2010) 0.84
Detection and characterization of partially unfolded oligomers of the SH3 domain of alpha-spectrin. Biophys J (2004) 0.84
Structural characterization of Spo0E-like protein-aspartic acid phosphatases that regulate sporulation in bacilli. J Biol Chem (2006) 0.84
Solution structure, dynamics and thermodynamics of the three SH3 domains of CD2AP. J Biomol NMR (2011) 0.84
The high-resolution NMR structure of a single-chain chimeric protein mimicking a SH3-peptide complex. FEBS Lett (2007) 0.83
Characterization of oligomers of heterogeneous size as precursors of amyloid fibril nucleation of an SH3 domain: an experimental kinetics study. PLoS One (2012) 0.83
Environmental conditions affect the kinetics of nucleation of amyloid fibrils and determine their morphology. Biophys J (2010) 0.83
Structure and localization of an essential transmembrane segment of the proton translocation channel of yeast H+-V-ATPase. Biochim Biophys Acta (2006) 0.83
Analysis of the thermodynamics of binding of an SH3 domain to proline-rich peptides using a chimeric fusion protein. J Mol Biol (2007) 0.82
On the molecular basis of the recognition of angiotensin II (AII). NMR structure of AII in solution compared with the X-ray structure of AII bound to the mAb Fab131. Eur J Biochem (2003) 0.81
Comparative NMR study on the impact of point mutations on protein stability of Pseudomonas mendocina lipase. Protein Sci (2006) 0.81
NMR and molecular dynamics studies of an autoimmune myelin basic protein peptide and its antagonist: structural implications for the MHC II (I-Au)-peptide complex from docking calculations. Eur J Biochem (2004) 0.81
Rapid protein-ligand costructures from sparse NOE data. J Med Chem (2012) 0.81
Expression, purification, characterization, and solution nuclear magnetic resonance study of highly deuterated yeast cytochrome C peroxidase with enhanced solubility. Biochemistry (2013) 0.80
Characterization of single-tryptophan mutants of histidine-containing phosphocarrier protein: evidence for local rearrangements during folding from high concentrations of denaturant. Biochemistry (2003) 0.79
Study of the structural and dynamic effects in the FimH adhesin upon α-d-heptyl mannose binding. J Med Chem (2014) 0.79
Purification, crystallization and preliminary X-ray diffraction analysis of the Fyn SH2 domain and its complex with a phosphotyrosine peptide. Acta Crystallogr Sect F Struct Biol Cryst Commun (2012) 0.79
¹H, ¹³C, and ¹⁵N backbone and side-chain chemical shift assignment of the toxin Doc in the unbound state. Biomol NMR Assign (2013) 0.79
A single mutation in an SH3 domain increases amyloid aggregation by accelerating nucleation, but not by destabilizing thermodynamically the native state. FEBS Lett (2009) 0.78
1H, 13C, and 15N backbone and side-chain chemical shift assignment of the staphylococcal MazF mRNA interferase. Biomol NMR Assign (2011) 0.78
Crystallization of the Staphylococcus aureus MazF mRNA interferase. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.77
Distinct ubiquitin binding modes exhibited by SH3 domains: molecular determinants and functional implications. PLoS One (2013) 0.77
Multimeric and differential binding of CIN85/CD2AP with two atypical proline-rich sequences from CD2 and Cbl-b*. FEBS J (2013) 0.77
1H, 13C and 15N backbone and side-chain chemical shift assignment of the Fyn SH2 domain and its complex with a phosphotyrosine peptide. Biomol NMR Assign (2011) 0.76
Solution NMR study of the yeast cytochrome c peroxidase: cytochrome c interaction. J Biomol NMR (2013) 0.76
Production, crystallization and X-ray diffraction analysis of two nanobodies against the Duffy binding-like (DBL) domain DBL6ℇ-FCR3 of the Plasmodium falciparum VAR2CSA protein. Acta Crystallogr Sect F Struct Biol Cryst Commun (2013) 0.75
Crystallization and preliminary X-ray diffraction analysis of kanamycin-binding β-lactamase in complex with its ligand. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.75
Mapping the structure of amyloid nucleation precursors by protein engineering kinetic analysis. Phys Chem Chem Phys (2014) 0.75
Paramagnetic properties of the low- and high-spin states of yeast cytochrome c peroxidase. J Biomol NMR (2013) 0.75
The structure of bypass of forespore C, an intercompartmental signaling factor during sporulation in Bacillus. J Biol Chem (2005) 0.75
¹H, ¹³C and ¹⁵N backbone and side-chain chemical shift assignments of the free and bound forms of the human PTPN11 second SH2 domain. Biomol NMR Assign (2013) 0.75