PubRank

Wim Van Criekinge

Author PubWeight™ 66.37‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Comparing the DNA hypermethylome with gene mutations in human colorectal cancer. PLoS Genet 2007 3.39
2 Telomere length and cardiovascular risk factors in a middle-aged population free of overt cardiovascular disease. Aging Cell 2007 2.62
3 PubMeth: a cancer methylation database combining text-mining and expert annotation. Nucleic Acids Res 2007 2.41
4 Quantitation of promoter methylation of multiple genes in urine DNA and bladder cancer detection. J Natl Cancer Inst 2006 2.05
5 Quantitative methylation-specific polymerase chain reaction gene patterns in urine sediment distinguish prostate cancer patients from control subjects. J Clin Oncol 2005 1.80
6 Genome-wide promoter analysis uncovers portions of the cancer methylome. Cancer Res 2008 1.70
7 Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells. Cancer Res 2008 1.69
8 Paternal age at birth is an important determinant of offspring telomere length. Hum Mol Genet 2007 1.58
9 NMR-based characterization of metabolic alterations in hypertension using an adaptive, intelligent binning algorithm. Anal Chem 2008 1.53
10 Phylogenetic trees: visualizing, customizing and detecting incongruence. Bioinformatics 2005 1.38
11 Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events. Mol Cell Proteomics 2013 1.33
12 Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform. BMC Med Genomics 2012 1.32
13 The epigenetic promise for prostate cancer diagnosis. Prostate 2011 1.26
14 Cancer-related epigenome changes associated with reprogramming to induced pluripotent stem cells. Cancer Res 2010 1.24
15 Identification of epigenetically silenced genes in tumor endothelial cells. Cancer Res 2007 1.20
16 Clinical utility of an epigenetic assay to detect occult prostate cancer in histopathologically negative biopsies: results of the MATLOC study. J Urol 2012 1.19
17 Identification and validation of the methylated TWIST1 and NID2 genes through real-time methylation-specific polymerase chain reaction assays for the noninvasive detection of primary bladder cancer in urine samples. Eur Urol 2009 1.16
18 Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics. PLoS One 2011 1.15
19 Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing. PLoS One 2013 1.15
20 Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs. BMC Genomics 2013 1.12
21 Massive parallel amplicon sequencing of the breast cancer genes BRCA1 and BRCA2: opportunities, challenges, and limitations. Hum Mutat 2011 1.11
22 Genome sequence of Helicobacter suis supports its role in gastric pathology. Vet Res 2011 1.11
23 N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men. Mol Cell Proteomics 2014 1.07
24 Biomarkers for detection and prognosis of breast cancer identified by a functional hypermethylome screen. Epigenetics 2012 1.07
25 Promoter DNA methylation of oncostatin m receptor-beta as a novel diagnostic and therapeutic marker in colon cancer. PLoS One 2009 1.06
26 Pharmacologic unmasking of epigenetically silenced genes in breast cancer. Clin Cancer Res 2009 1.06
27 Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromes. Hum Mutat 2011 1.05
28 The effect of VEGF-targeted therapy on biomarker expression in sequential tissue from patients with metastatic clear cell renal cancer. Clin Cancer Res 2013 1.04
29 Telomere length and cardiovascular aging: the means to the ends? Ageing Res Rev 2010 1.04
30 A new class of ubiquitin extension proteins secreted by the dorsal pharyngeal gland in plant parasitic cyst nematodes. Mol Plant Microbe Interact 2004 1.04
31 Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline. BMC Bioinformatics 2010 1.02
32 Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers. Genome Biol 2012 1.02
33 MutaDATABASE: a centralized and standardized DNA variation database. Nat Biotechnol 2011 0.99
34 Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii. Parasitol Res 2005 0.98
35 Transcriptional reprogramming by root knot and migratory nematode infection in rice. New Phytol 2012 0.96
36 Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots. J Exp Bot 2013 0.95
37 A tissue biopsy-based epigenetic multiplex PCR assay for prostate cancer detection. BMC Urol 2012 0.94
38 Peptidomics coming of age: a review of contributions from a bioinformatics angle. J Proteome Res 2010 0.93
39 ssDNA-binding protein 2 is frequently hypermethylated and suppresses cell growth in human prostate cancer. Clin Cancer Res 2008 0.91
40 Systemic telomere length and preclinical atherosclerosis: the Asklepios Study. Eur Heart J 2009 0.91
41 Methylation-specific digital karyotyping of HPV16E6E7-expressing human keratinocytes identifies novel methylation events in cervical carcinogenesis. J Pathol 2013 0.90
42 Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing. J Exp Bot 2012 0.89
43 Lower red blood cell counts in middle-aged subjects with shorter peripheral blood leukocyte telomere length. Aging Cell 2008 0.88
44 Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate. Proteomics 2009 0.87
45 Evaluation of standard and advanced preprocessing methods for the univariate analysis of blood serum 1H-NMR spectra. Anal Bioanal Chem 2010 0.85
46 MEN1 gene mutation and reduced expression are associated with poor prognosis in pulmonary carcinoids. J Clin Endocrinol Metab 2013 0.85
47 We are all individuals... bioinformatics in the personalized medicine era. Cell Oncol (Dordr) 2014 0.84
48 Next-generation technologies and data analytical approaches for epigenomics. Environ Mol Mutagen 2013 0.84
49 Strategies for validation and testing of DNA methylation biomarkers. Epigenomics 2014 0.83
50 A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites. Proteomics 2014 0.82
51 An exploration of pathways involved in lung carcinoid progression using gene expression profiling. Carcinogenesis 2013 0.81
52 Low dose irradiation of thyroid cells reveals a unique transcriptomic and epigenetic signature in RET/PTC-positive cells. Mutat Res 2011 0.81
53 GLUCAN SYNTHASE-LIKE8 and STEROL METHYLTRANSFERASE2 are required for ploidy consistency of the sexual reproduction system in Arabidopsis. Plant Cell 2013 0.81
54 Studying telomeres in a longitudinal population based study. Front Biosci 2008 0.80
55 A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome. J Proteome Res 2010 0.79
56 CD44 and OTP are strong prognostic markers for pulmonary carcinoids. Clin Cancer Res 2013 0.77
57 Illumina sequencing of 15 deafness genes using fragmented amplicons. BMC Res Notes 2014 0.75
58 The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study. Psychosom Med 2017 0.75
59 An omnibus consistent adaptive percentile modified Wilcoxon rank sum test with applications in gene expression studies. Biometrics 2012 0.75
60 Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool. J Proteome Res 2012 0.75
61 Corrigendum: A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq. Sci Rep 2016 0.75