Eucaryotic diversity in a hypersaline microbial mat.

PubWeight™: 1.09‹?› | Rank: Top 10%

🔗 View Article (PMC 2223211)

Published in Appl Environ Microbiol on November 09, 2007

Authors

Leah M Feazel1, John R Spear, Alicia B Berger, J Kirk Harris, Daniel N Frank, Ruth E Ley, Norman R Pace

Author Affiliations

1: Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 90309-0347, USA.

Articles citing this

XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data. BMC Bioinformatics (2008) 1.70

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME J (2012) 1.51

Phylogenetic analysis of a microbialite-forming microbial mat from a hypersaline lake of the Kiritimati atoll, Central Pacific. PLoS One (2013) 1.27

Diversity and stratification of archaea in a hypersaline microbial mat. Appl Environ Microbiol (2008) 1.14

[FeFe] hydrogenase genetic diversity provides insight into molecular adaptation in a saline microbial mat community. Appl Environ Microbiol (2009) 1.00

Patterns of microbial diversity along a salinity gradient in the Guerrero Negro solar saltern, Baja CA Sur, Mexico. Front Microbiol (2013) 0.92

Characterization of halophiles isolated from solar salterns in Baja California, Mexico. Extremophiles (2009) 0.90

Phototrophic phylotypes dominate mesothermal microbial mats associated with hot springs in Yellowstone National Park. Microb Ecol (2012) 0.88

Heterotrophic protists in hypersaline microbial mats and deep hypersaline basin water columns. Life (Basel) (2013) 0.83

Secondary metabolites produced by fungi derived from a microbial mat encountered in an iron-rich natural spring. Tetrahedron Lett (2012) 0.82

Active eukaryotes in microbialites from Highborne Cay, Bahamas, and Hamelin Pool (Shark Bay), Australia. ISME J (2013) 0.80

Community structure and activity of a highly dynamic and nutrient-limited hypersaline microbial mat in Um Alhool Sabkha, Qatar. PLoS One (2014) 0.78

Microbial mats: an ecological niche for fungi. Front Microbiol (2013) 0.75

Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond. Environ Microbiol (2017) 0.75

Articles cited by this

Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol (1998) 10.53

Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl Environ Microbiol (2006) 4.74

An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa. Mol Phylogenet Evol (2006) 3.38

Novel kingdom-level eukaryotic diversity in anoxic environments. Proc Natl Acad Sci U S A (2002) 2.88

Community structure of a microbial mat: the phylogenetic dimension. Proc Natl Acad Sci U S A (1994) 2.57

Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments. Appl Environ Microbiol (2003) 1.82

Geobiology of a microbial endolithic community in the Yellowstone geothermal environment. Nature (2005) 1.69

Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol (2003) 1.56

Microeukaryote community patterns along an O2/H2S gradient in a supersulfidic anoxic fjord (Framvaren, Norway). Appl Environ Microbiol (2006) 1.45

The molecular diversity of freshwater picoeukaryotes from an oligotrophic lake reveals diverse, distinctive and globally dispersed lineages. Environ Microbiol (2005) 1.44

Complexity in natural microbial ecosystems: the Guerrero Negro experience. Biol Bull (2003) 1.41

Long-term manipulations of intact microbial mat communities in a greenhouse collaboratory: simulating earth's present and past field environments. Astrobiology (2002) 1.21

Determination of nitrogen-fixing phylotypes in Lyngbya sp. and Microcoleus chthonoplastes cyanobacterial mats from Guerrero Negro, Baja California, Mexico. Appl Environ Microbiol (2004) 1.17

Comparative nematode photoreceptors. Comp Biochem Physiol A Comp Physiol (1975) 0.81

Ocellar pigmentation and phototaxis in the nematode Mermis nigrescens: changes during development. J Exp Biol (2000) 0.81

Articles by these authors

QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34

A core gut microbiome in obese and lean twins. Nature (2008) 52.30

An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods (2008) 32.71

The human microbiome project. Nature (2007) 28.53

Host-bacterial mutualism in the human intestine. Science (2005) 26.39

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A (2007) 20.60

Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5. Science (2010) 12.54

Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature (2008) 12.45

Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell (2006) 9.64

Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci U S A (2010) 9.57

New perspective on uncultured bacterial phylogenetic division OP11. Appl Environ Microbiol (2004) 7.87

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53

Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol (2007) 5.79

Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science (2013) 5.75

Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell (2012) 4.86

Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl Environ Microbiol (2006) 4.74

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases. Cell Host Microbe (2008) 4.14

Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis. Proc Natl Acad Sci U S A (2007) 4.06

Hydrogen and bioenergetics in the Yellowstone geothermal ecosystem. Proc Natl Acad Sci U S A (2005) 3.83

The genetic core of the universal ancestor. Genome Res (2003) 3.82

Human oral, gut, and plaque microbiota in patients with atherosclerosis. Proc Natl Acad Sci U S A (2010) 3.51

Opportunistic pathogens enriched in showerhead biofilms. Proc Natl Acad Sci U S A (2009) 3.35

Direct sequencing of the human microbiome readily reveals community differences. Genome Biol (2010) 3.34

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME J (2011) 3.24

Gastrointestinal microbiology enters the metagenomics era. Curr Opin Gastroenterol (2008) 3.08

Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut. Cell Host Microbe (2013) 3.05

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. PLoS Comput Biol (2013) 2.96

Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc Natl Acad Sci U S A (2013) 2.88

Novel kingdom-level eukaryotic diversity in anoxic environments. Proc Natl Acad Sci U S A (2002) 2.88

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut (2011) 2.67

Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases. Inflamm Bowel Dis (2010) 2.62

The human nasal microbiota and Staphylococcus aureus carriage. PLoS One (2010) 2.50

Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice. Cell Host Microbe (2012) 2.48

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife (2013) 2.36

Activity-based probes that target diverse cysteine protease families. Nat Chem Biol (2005) 2.21

An open letter to Elias Zerhouni. Science (2005) 2.19

The effect of PPI use on human gut microbiota and weight loss in patients undergoing laparoscopic Roux-en-Y gastric bypass. Obes Surg (2014) 2.18

Bacterial RNase P: a new view of an ancient enzyme. Nat Rev Microbiol (2006) 2.17

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat. Mol Syst Biol (2008) 2.12

Crystal structure of a bacterial ribonuclease P RNA. Proc Natl Acad Sci U S A (2005) 2.01

Noninvasive optical imaging of apoptosis by caspase-targeted activity-based probes. Nat Med (2009) 1.90

Structural perspective on the activation of RNAse P RNA by protein. Nat Struct Mol Biol (2005) 1.87

RNase P: interface of the RNA and protein worlds. Trends Biochem Sci (2006) 1.85

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. PLoS One (2012) 1.82

Leptotrichia amnionii sp. nov., a novel bacterium isolated from the amniotic fluid of a woman after intrauterine fetal demise. J Clin Microbiol (2002) 1.76

Responses of gut microbiota to diet composition and weight loss in lean and obese mice. Obesity (Silver Spring) (2011) 1.73

Development of the human gastrointestinal microbiota and insights from high-throughput sequencing. Gastroenterology (2011) 1.70

Geobiology of a microbial endolithic community in the Yellowstone geothermal environment. Nature (2005) 1.69

Host-bacterial coevolution and the search for new drug targets. Curr Opin Chem Biol (2008) 1.63

Phylogenetic diversity and ecology of environmental Archaea. Curr Opin Microbiol (2005) 1.62

Altered vaginal microbiota are associated with perinatal mother-to-child transmission of HIV in African women from Burkina Faso. J Acquir Immune Defic Syndr (2012) 1.60

Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol (2003) 1.56

Molecular identification of potential pathogens in water and air of a hospital therapy pool. Proc Natl Acad Sci U S A (2005) 1.55

Supervised classification of microbiota mitigates mislabeling errors. ISME J (2010) 1.54

Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia. Appl Environ Microbiol (2005) 1.52

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. ISME J (2012) 1.51

Culture-independent molecular analysis of microbial constituents of the healthy human outer ear. J Clin Microbiol (2003) 1.46

Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Res (2012) 1.45

Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring. Appl Environ Microbiol (2003) 1.44

Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations. PLoS One (2013) 1.43

Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota. Appl Environ Microbiol (2006) 1.42

Complexity in natural microbial ecosystems: the Guerrero Negro experience. Biol Bull (2003) 1.41

Molecular analysis of shower curtain biofilm microbes. Appl Environ Microbiol (2004) 1.41

Microbial diversity in chronic open wounds. Wound Repair Regen (2009) 1.39

Protein activation of a ribozyme: the role of bacterial RNase P protein. EMBO J (2005) 1.38

Subsurface microbial diversity in deep-granitic-fracture water in Colorado. Appl Environ Microbiol (2007) 1.38

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data. Bioinformatics (2013) 1.38

Reliability of quantitative real-time PCR for bacterial detection in cystic fibrosis airway specimens. PLoS One (2010) 1.37

The effects of airway microbiome on corticosteroid responsiveness in asthma. Am J Respir Crit Care Med (2013) 1.36

Measuring and improving respiratory outcomes in cystic fibrosis lung disease: opportunities and challenges to therapy. J Cyst Fibros (2009) 1.35

Microbial composition of near-boiling silica-depositing thermal springs throughout Yellowstone National Park. Appl Environ Microbiol (2002) 1.30

Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing. Appl Environ Microbiol (2010) 1.25

Interleukin-1β (IL-1β) promotes susceptibility of Toll-like receptor 5 (TLR5) deficient mice to colitis. Gut (2011) 1.25

Structural implications of novel diversity in eucaryal RNase P RNA. RNA (2005) 1.25

High-resolution structure of RNase P protein from Thermotoga maritima. Proc Natl Acad Sci U S A (2003) 1.23

Microbiome complexity and Staphylococcus aureus in chronic rhinosinusitis. Laryngoscope (2012) 1.22

Culture-independent analysis of aerosol microbiology in a metropolitan subway system. Appl Environ Microbiol (2013) 1.22

Commonly used caspase inhibitors designed based on substrate specificity profiles lack selectivity. Cell Res (2006) 1.22