Published in Stat Appl Genet Mol Biol on December 08, 2007
Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in Drosophila. Bioinformatics (2008) 1.03
Segmentation and intensity estimation for microarray images with saturated pixels. BMC Bioinformatics (2011) 0.77
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96
The Systems Biology Graphical Notation. Nat Biotechnol (2009) 8.53
Statistical methods for analysis of high-throughput RNA interference screens. Nat Methods (2009) 4.76
Synaptic NMDA receptor activity boosts intrinsic antioxidant defenses. Nat Neurosci (2008) 4.04
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA (2008) 3.13
Screening for mammalian neural genes via fluorescence-activated cell sorter purification of neural precursors from Sox1-gfp knock-in mice. Proc Natl Acad Sci U S A (2003) 2.86
Complete genome sequence and lytic phase transcription profile of a Coccolithovirus. Science (2005) 2.86
The transcription factor STAT-1 couples macrophage synthesis of 25-hydroxycholesterol to the interferon antiviral response. Immunity (2012) 1.96
Transcriptome profile of murine gammaherpesvirus-68 lytic infection. J Gen Virol (2003) 1.75
SPRINT: a new parallel framework for R. BMC Bioinformatics (2008) 1.75
Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei. BMC Genomics (2009) 1.67
Host defense against viral infection involves interferon mediated down-regulation of sterol biosynthesis. PLoS Biol (2011) 1.56
A logic-based diagram of signalling pathways central to macrophage activation. BMC Syst Biol (2008) 1.49
Discrete clusters of virus-encoded micrornas are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus. J Virol (2007) 1.39
High-throughput sequence analysis of variants of human cytomegalovirus strains Towne and AD169. J Gen Virol (2009) 1.34
PEDRo: a database for storing, searching and disseminating experimental proteomics data. BMC Genomics (2004) 1.34
Transcriptomal analysis of varicella-zoster virus infection using long oligonucleotide-based microarrays. J Gen Virol (2005) 1.31
Neutrality of the canonical NF-kappaB-dependent pathway for human and murine cytomegalovirus transcription and replication in vitro. J Virol (2004) 1.21
Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs. Proc Natl Acad Sci U S A (2010) 1.20
Viral mediated redirection of NEMO/IKKγ to autophagosomes curtails the inflammatory cascade. PLoS Pathog (2012) 1.11
Locus-specific gene expression pattern suggests a unique propagation strategy for a giant algal virus. J Virol (2006) 1.09
Multi-factorial analysis of class prediction error: estimating optimal number of biomarkers for various classification rules. J Bioinform Comput Biol (2010) 1.08
General and specific alterations in programming of global viral gene expression during infection by VP16 activation-deficient mutants of herpes simplex virus type 1. J Virol (2002) 1.06
Logic models of pathway biology. Drug Discov Today (2008) 1.04
Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics (2008) 1.03
Practical approaches to long oligonucleotide-based DNA microarray: lessons from herpesviruses. Prog Nucleic Acid Res Mol Biol (2002) 1.03
STAT2 deficiency and susceptibility to viral illness in humans. Proc Natl Acad Sci U S A (2013) 1.01
The mEPN scheme: an intuitive and flexible graphical system for rendering biological pathways. BMC Syst Biol (2010) 0.99
Construction of a large scale integrated map of macrophage pathogen recognition and effector systems. BMC Syst Biol (2010) 0.98
A systematic analysis of host factors reveals a Med23-interferon-λ regulatory axis against herpes simplex virus type 1 replication. PLoS Pathog (2013) 0.98
Regulation of the transcription and replication cycle of human cytomegalovirus is insensitive to genetic elimination of the cognate NF-kappaB binding sites in the enhancer. J Virol (2006) 0.96
Expression profiling of the developing testis in wild-type and Dazl knockout mice. Mol Reprod Dev (2004) 0.95
Fluorescence lifetime imaging of quantum dot labeled DNA microarrays. Int J Mol Sci (2009) 0.95
Digital clocks: simple Boolean models can quantitatively describe circadian systems. J R Soc Interface (2012) 0.94
Innate immune response gene expression profiles of N9 microglia are pathogen-type specific. J Neuroimmunol (2006) 0.94
Temporal profiling of the coding and noncoding murine cytomegalovirus transcriptomes. J Virol (2011) 0.93
Phenotypes of major immediate-early gene mutants of mouse cytomegalovirus. Med Microbiol Immunol (2008) 0.92
Combined genome-wide expression profiling and targeted RNA interference in primary mouse macrophages reveals perturbation of transcriptional networks associated with interferon signalling. BMC Genomics (2009) 0.92
Quantitative analysis of low-abundance peptides in HeLa cell cytoplasm by targeted liquid chromatography/mass spectrometry and stable isotope dilution: emphasising the distinction between peptide detection and peptide identification. Rapid Commun Mass Spectrom (2010) 0.90
Transcriptional responses of murine macrophages to the adenylate cyclase toxin of Bordetella pertussis. Microb Pathog (2007) 0.89
Quantitative assessment of human whole blood RNA as a potential biomarker for infectious disease. Analyst (2007) 0.89
A multiplexed protein microarray for the simultaneous serodiagnosis of human immunodeficiency virus/hepatitis C virus infection and typing of whole blood. Anal Biochem (2008) 0.88
Uterine NK cells regulate endometrial bleeding in women and are suppressed by the progesterone receptor modulator asoprisnil. J Immunol (2013) 0.88
Dielectrophoretic manipulation of ribosomal RNA. Biomicrofluidics (2011) 0.88
Design of a herpes simplex virus type 2 long oligonucleotide-based microarray: global analysis of HSV-2 transcript abundance during productive infection. Methods Mol Biol (2005) 0.86
Human cytomegalovirus UL7, a homologue of the SLAM-family receptor CD229, impairs cytokine production. Immunol Cell Biol (2011) 0.85
DNA nanoswitch as a biosensor. Anal Chem (2007) 0.83
Optimization of a parallel permutation testing function for the SPRINT R package. Concurr Comput (2011) 0.83
A comprehensive machine-readable view of the mammalian cholesterol biosynthesis pathway. Biochem Pharmacol (2013) 0.82
A model of flux regulation in the cholesterol biosynthesis pathway: Immune mediated graduated flux reduction versus statin-like led stepped flux reduction. Biochimie (2012) 0.82
Genome-wide reduction in transcriptomal profiles of varicella-zoster virus vaccine strains compared with parental Oka strain using long oligonucleotide microarrays. Virus Genes (2008) 0.81
The mouse cytomegalovirus immediate-early 1 gene is not required for establishment of latency or for reactivation in the lungs. J Virol (2009) 0.81
In vivo competence of murine cytomegalovirus under the control of the human cytomegalovirus major immediate-early enhancer in the establishment of latency and reactivation. J Virol (2008) 0.81
In vivo transduction of photoreceptors or ciliary body by intravitreal injection of pseudotyped adenoviral vectors. Mol Ther (2003) 0.81
Proteolysis-inducing factor core peptide mediates dermcidin-induced proliferation of hepatic cells through multiple signalling networks. Int J Oncol (2011) 0.81
Gene expression profiling of mid to late secretory phase endometrial biopsies from women with menstrual complaint. Am J Obstet Gynecol (2006) 0.80
Viruses in control of the immune system. Workshop on molecular mechanisms of immune modulation: lessons from viruses. EMBO Rep (2002) 0.79
Fast DNA and protein microarray tests for the diagnosis of hepatitis C virus infection on a single platform. Anal Bioanal Chem (2011) 0.79
Molecular profiling of the human testis reveals stringent pathway-specific regulation of RNA expression following gonadotropin suppression and progestogen treatment. J Androl (2007) 0.79
Ablation of the regulatory IE1 protein of murine cytomegalovirus alters in vivo pro-inflammatory TNF-alpha production during acute infection. PLoS Pathog (2012) 0.79
Biochip sensors for the rapid and sensitive detection of viral disease. Genome Biol (2005) 0.79
Use of logic theory in understanding regulatory pathway signaling in response to infection. Future Microbiol (2010) 0.79
Enhancerless cytomegalovirus is capable of establishing a low-level maintenance infection in severely immunodeficient host tissues but fails in exponential growth. J Virol (2010) 0.78
Development of immunosensors for direct detection of three wound infection biomarkers at point of care using electrochemical impedance spectroscopy. Biosens Bioelectron (2011) 0.78
Assessment of transcriptomal analysis of Varicella-Zoster-virus gene expression in patients with and without post-herpetic neuralgia. Virus Genes (2010) 0.77
Meeting review: Bioinformatics of biochips: accelerating discovery in functional genomics. Comp Funct Genomics (2002) 0.77
Peptide-tags for enhanced DNA microarray performance. Faraday Discuss (2011) 0.76
Inferring Boolean networks with perturbation from sparse gene expression data: a general model applied to the interferon regulatory network. Mol Biosyst (2008) 0.76
Extending signaling pathways with protein-interaction networks. Application to apoptosis. OMICS (2012) 0.76
GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults. BMC Genomics (2005) 0.75
Infection homeostasis: implications for therapeutic and immune programming of metabolism in controlling infection. Med Microbiol Immunol (2015) 0.75
Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis. Nucleic Acids Res (2013) 0.75
Peter Ghazal talks about his vision for the Scottish Centre for Genomic Technology and Informatics. Interview by Ulrike Knies-Bamforth. Drug Discov Today (2006) 0.75
Artificial intelligence and robotics in high throughput post-genomics. Drug Discov Today (2005) 0.75
Cell interaction microarray for blood phenotyping. Anal Chem (2006) 0.75
Impedimetric detection of single-stranded PCR products derived from methicillin resistant Staphylococcus aureus (MRSA) isolates. Biosens Bioelectron (2012) 0.75
Time-lapse ultrashort pulse microscopy of infection in three-dimensional versus two-dimensional culture environments reveals enhanced extra-chromosomal virus replication compartment formation. J Biomed Opt (2013) 0.75
Profile: Peter Ghazal interviewed by Suzanne Berry. Trends Biotechnol (2002) 0.75