Visualizing and clustering high throughput sub-cellular localization imaging.

PubWeight™: 1.04‹?› | Rank: Top 15%

🔗 View Article (PMC 2248560)

Published in BMC Bioinformatics on February 04, 2008

Authors

Nicholas A Hamilton1, Rohan D Teasdale

Author Affiliations

1: ARC Centre of Excellence in Bioinformatics, The University of Queensland, Brisbane, Queensland 4072, Australia. n.hamilton@imb.uq.edu.au

Articles by these authors

An atlas of combinatorial transcriptional regulation in mouse and man. Cell (2010) 6.24

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet (2009) 6.02

Twenty pairs of sox: extent, homology, and nomenclature of the mouse and human sox transcription factor gene families. Dev Cell (2002) 3.39

Mouse proteome analysis. Genome Res (2003) 2.69

Defining macropinocytosis. Traffic (2009) 2.56

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. PLoS Genet (2006) 2.48

Evaluation and comparison of mammalian subcellular localization prediction methods. BMC Bioinformatics (2006) 2.11

Secretory pathway of trypanosomatid parasites. Microbiol Mol Biol Rev (2002) 1.81

LOCATE: a mammalian protein subcellular localization database. Nucleic Acids Res (2007) 1.79

Fast automated cell phenotype image classification. BMC Bioinformatics (2007) 1.74

The phox homology (PX) domain-dependent, 3-phosphoinositide-mediated association of sorting nexin-1 with an early sorting endosomal compartment is required for its ability to regulate epidermal growth factor receptor degradation. J Biol Chem (2002) 1.73

LOCATE: a mouse protein subcellular localization database. Nucleic Acids Res (2006) 1.67

EGF induces macropinocytosis and SNX1-modulated recycling of E-cadherin. J Cell Sci (2007) 1.64

Prediction of protein B-factor profiles. Proteins (2005) 1.64

The mouse secretome: functional classification of the proteins secreted into the extracellular environment. Genome Res (2003) 1.61

Phox homology band 4.1/ezrin/radixin/moesin-like proteins function as molecular scaffolds that interact with cargo receptors and Ras GTPases. Proc Natl Acad Sci U S A (2011) 1.57

Structure of Vps26B and mapping of its interaction with the retromer protein complex. Traffic (2007) 1.33

In vivo analysis of growth hormone receptor signaling domains and their associated transcripts. Mol Cell Biol (2005) 1.31

Sorting nexin 5 is localized to a subdomain of the early endosomes and is recruited to the plasma membrane following EGF stimulation. J Cell Sci (2004) 1.28

A novel hook-related protein family and the characterization of hook-related protein 1. Traffic (2005) 1.27

Visualisation of macropinosome maturation by the recruitment of sorting nexins. J Cell Sci (2006) 1.25

The Vps35 D620N mutation linked to Parkinson's disease disrupts the cargo sorting function of retromer. Traffic (2013) 1.23

A WAVE2-Arp2/3 actin nucleator apparatus supports junctional tension at the epithelial zonula adherens. Mol Biol Cell (2012) 1.22

Inhibition of the PtdIns(5) kinase PIKfyve disrupts intracellular replication of Salmonella. EMBO J (2010) 1.19

Identifying the molecular phenotype of renal progenitor cells. J Am Soc Nephrol (2004) 1.18

SVMtm: support vector machines to predict transmembrane segments. J Comput Chem (2004) 1.18

Prediction of Golgi Type II membrane proteins based on their transmembrane domains. Bioinformatics (2002) 1.13

Structural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins. Proc Natl Acad Sci U S A (2013) 1.13

Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units. PLoS Genet (2006) 1.12

MemO: a consensus approach to the annotation of a protein's membrane organization. In Silico Biol (2006) 1.12

Intracellular sorting and transport of proteins. Prog Biophys Mol Biol (2003) 1.07

The golgin GCC88 is required for efficient retrograde transport of cargo from the early endosomes to the trans-Golgi network. Mol Biol Cell (2007) 1.07

Subcellular localization of mammalian type II membrane proteins. Traffic (2006) 1.06

Statistical and visual differentiation of subcellular imaging. BMC Bioinformatics (2009) 1.06

A novel mammalian retromer component, Vps26B. Traffic (2005) 1.03

Phosphoinositide 3-kinase δ regulates membrane fission of Golgi carriers for selective cytokine secretion. J Cell Biol (2010) 1.03

An integrated genetic and functional analysis of the role of type II transmembrane serine proteases (TMPRSSs) in hearing loss. Hum Mutat (2008) 1.02

Predicting the solvent accessibility of transmembrane residues from protein sequence. J Proteome Res (2006) 1.02

Targeting of the GRIP domain to the trans-Golgi network is conserved from protists to animals. Eur J Cell Biol (2002) 1.01

Assembly and solution structure of the core retromer protein complex. Traffic (2010) 1.01

Analysis of the mouse transcriptome for genes involved in the function of the nervous system. Genome Res (2003) 1.00

Vps26A and Vps26B subunits define distinct retromer complexes. Traffic (2011) 1.00

Towards defining the nuclear proteome. Genome Biol (2008) 0.98

Genomic screen for genes involved in mammalian craniofacial development. Genesis (2003) 0.97

A role for SNX5 in the regulation of macropinocytosis. BMC Cell Biol (2008) 0.97

Identifying novel peroxisomal proteins. Proteins (2007) 0.96

The SNX-PX-BAR family in macropinocytosis: the regulation of macropinosome formation by SNX-PX-BAR proteins. PLoS One (2010) 0.96

Expression of the tudor-related gene Tdrd5 during development of the male germline in mice. Gene Expr Patterns (2004) 0.95

Contextual binding of p120ctn to E-cadherin at the basolateral plasma membrane in polarized epithelia. J Biol Chem (2003) 0.95

Spatial gene expression in the T-stage mouse metanephros. Gene Expr Patterns (2006) 0.92

PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases. BMC Bioinformatics (2006) 0.91

A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters. PLoS One (2012) 0.90

Polarized trafficking of E-cadherin is regulated by Rac1 and Cdc42 in Madin-Darby canine kidney cells. Am J Physiol Cell Physiol (2005) 0.86

Identification of a Golgi-localised GRIP domain protein from Arabidopsis thaliana. Planta (2004) 0.85

Definition and spatial annotation of the dynamic secretome during early kidney development. Dev Dyn (2006) 0.84

Differential gene expression in the developing mouse ureter. Gene Expr Patterns (2006) 0.83

Phosphoinositide binding by the SNX27 FERM domain regulates its localization at the immune synapse of activated T-cells. J Cell Sci (2015) 0.82

Computational differentiation of N-terminal signal peptides and transmembrane helices. Biochem Biophys Res Commun (2003) 0.81

Determining nucleolar association from sequence by leveraging protein-protein interactions. J Comput Biol (2008) 0.80

SNX5 is essential for efficient macropinocytosis and antigen processing in primary macrophages. Biol Open (2012) 0.78

Identification and analysis of novel genes expressed in the mouse embryonic facial primordia. Front Biosci (2006) 0.77

Analyzing real-time video microscopy: the dynamics and geometry of vesicles and tubules in endocytosis. Curr Protoc Cell Biol (2007) 0.76

Conserved modularity and potential for alternate splicing in mouse and human Slit genes. Int J Dev Biol (2002) 0.75