Published in Metab Eng on December 27, 2007
Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae. PLoS Genet (2010) 1.94
Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. PLoS One (2013) 1.18
Transcriptional loops meet chromatin: a dual-layer network controls white-opaque switching in Candida albicans. Mol Microbiol (2009) 1.16
Multilocus phylogenetic study of the Scheffersomyces yeast clade and characterization of the N-terminal region of xylose reductase gene. PLoS One (2012) 0.99
Systematic and evolutionary engineering of a xylose isomerase-based pathway in Saccharomyces cerevisiae for efficient conversion yields. Biotechnol Biofuels (2014) 0.95
Engineering and two-stage evolution of a lignocellulosic hydrolysate-tolerant Saccharomyces cerevisiae strain for anaerobic fermentation of xylose from AFEX pretreated corn stover. PLoS One (2014) 0.93
Co-fermentation of xylose and cellobiose by an engineered Saccharomyces cerevisiae. J Ind Microbiol Biotechnol (2012) 0.90
Deletion of PHO13, encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in Saccharomyces cerevisiae. Appl Environ Microbiol (2014) 0.88
Xylose Fermentation by Saccharomyces cerevisiae: Challenges and Prospects. Int J Mol Sci (2016) 0.82
Statistics-based model for prediction of chemical biosynthesis yield from Saccharomyces cerevisiae. Microb Cell Fact (2011) 0.82
Metabolic engineering of yeasts by heterologous enzyme production for degradation of cellulose and hemicellulose from biomass: a perspective. Front Microbiol (2014) 0.82
Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae: BIOCHEMICAL, STRUCTURAL, AND EVOLUTIONARY INSIGHTS. J Biol Chem (2015) 0.80
D-Xylulose kinase from Saccharomyces cerevisiae: isolation and characterization of the highly unstable enzyme, recombinantly produced in Escherichia coli. Protein Expr Purif (2011) 0.79
Chemical and Synthetic Genetic Array Analysis Identifies Genes that Suppress Xylose Utilization and Fermentation in Saccharomyces cerevisiae. G3 (Bethesda) (2011) 0.78
Disruption of PHO13 improves ethanol production via the xylose isomerase pathway. AMB Express (2016) 0.77
Accumulation of metabolic side products might favor the production of ethanol in Pho13 knockout strains. Microb Cell (2016) 0.75
Engineering a wild-type diploid Saccharomyces cerevisiae strain for second-generation bioethanol production. Bioresour Bioprocess (2016) 0.75
Genetic improvement of xylose metabolism by enhancing the expression of pentose phosphate pathway genes in Saccharomyces cerevisiae IR-2 for high-temperature ethanol production. J Ind Microbiol Biotechnol (2017) 0.75
Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Res (2008) 8.01
Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity. Appl Environ Microbiol (2003) 1.52
Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Proc Natl Acad Sci U S A (2011) 1.39
Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression saccharomyces cerevisiae strains: the comparison of two quantitative methods. J Proteome Res (2008) 1.39
Fermentation performance of engineered and evolved xylose-fermenting Saccharomyces cerevisiae strains. Biotechnol Bioeng (2004) 1.38
Ethanol fermentation on the move. Nat Biotechnol (2005) 1.27
Comparison of SHF and SSF processes from steam-exploded wheat straw for ethanol production by xylose-fermenting and robust glucose-fermenting Saccharomyces cerevisiae strains. Biotechnol Bioeng (2008) 1.25
Evolutionary engineering strategies to enhance tolerance of xylose utilizing recombinant yeast to inhibitors derived from spruce biomass. Biotechnol Biofuels (2012) 1.25
A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae. Biotechnol Bioeng (2007) 1.23
Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response. Appl Environ Microbiol (2004) 1.22
Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae. Metab Eng (2004) 1.19
Screening genus Penicillium for producers of cellulolytic and xylanolytic enzymes. Appl Biochem Biotechnol (2004) 1.19
Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function. Appl Environ Microbiol (2002) 1.16
Identification of in vivo enzyme activities in the cometabolism of glucose and acetate by Saccharomyces cerevisiae by using 13C-labeled substrates. Eukaryot Cell (2003) 1.15
Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: example of transcript analysis as a tool in inverse metabolic engineering. Appl Environ Microbiol (2005) 1.14
Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae. Appl Biochem Biotechnol (2003) 1.12
Metabolic engineering of ammonium assimilation in xylose-fermenting Saccharomyces cerevisiae improves ethanol production. Appl Environ Microbiol (2003) 1.12
Aerobic physiology of redox-engineered Saccharomyces cerevisiae strains modified in the ammonium assimilation for increased NADPH availability. FEMS Yeast Res (2003) 1.11
The roles of galactitol, galactose-1-phosphate, and phosphoglucomutase in galactose-induced toxicity in Saccharomyces cerevisiae. Biotechnol Bioeng (2008) 1.10
An expanded role for microbial physiology in metabolic engineering and functional genomics: moving towards systems biology. FEMS Yeast Res (2002) 1.09
Lignin boosts the cellulase performance of a GH-61 enzyme from Sporotrichum thermophile. Bioresour Technol (2012) 1.09
Metabolite profiling for analysis of yeast stress response during very high gravity ethanol fermentations. Biotechnol Bioeng (2005) 1.09
Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. Mol Syst Biol (2009) 1.08
Industrial systems biology of Saccharomyces cerevisiae enables novel succinic acid cell factory. PLoS One (2013) 1.08
A comparative summary of expression systems for the recombinant production of galactose oxidase. Microb Cell Fact (2010) 1.05
Manipulation of malic enzyme in Saccharomyces cerevisiae for increasing NADPH production capacity aerobically in different cellular compartments. Metab Eng (2004) 1.05
Intracellular metabolite profiling of Fusarium oxysporum converting glucose to ethanol. J Biotechnol (2004) 1.03
The influence of HMF and furfural on redox-balance and energy-state of xylose-utilizing Saccharomyces cerevisiae. Biotechnol Biofuels (2013) 1.03
Simultaneous saccharification and co-fermentation for bioethanol production using corncobs at lab, PDU and demo scales. Biotechnol Biofuels (2013) 1.03
Metabolic footprinting in microbiology: methods and applications in functional genomics and biotechnology. Trends Biotechnol (2008) 1.01
Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast Spathaspora passalidarum. Appl Environ Microbiol (2012) 0.99
Transposon mutagenesis to improve the growth of recombinant Saccharomyces cerevisiae on D-xylose. Appl Environ Microbiol (2007) 0.99
Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption. FEMS Yeast Res (2012) 0.99
Effect of compounds released during pretreatment of wheat straw on microbial growth and enzymatic hydrolysis rates. Biotechnol Bioeng (2007) 0.99
Systems analysis unfolds the relationship between the phosphoketolase pathway and growth in Aspergillus nidulans. PLoS One (2008) 0.99
The influence of different cultivation conditions on the metabolome of Fusarium oxysporum. J Biotechnol (2005) 0.97
Fueling industrial biotechnology growth with bioethanol. Adv Biochem Eng Biotechnol (2007) 0.97
Hap4 is not essential for activation of respiration at low specific growth rates in Saccharomyces cerevisiae. J Biol Chem (2006) 0.96
Characterization and kinetic analysis of a thermostable GH3 beta-glucosidase from Penicillium brasilianum. Appl Microbiol Biotechnol (2009) 0.95
Elucidation of the role of Grr1p in glucose sensing by Saccharomyces cerevisiae through genome-wide transcription analysis. FEMS Yeast Res (2004) 0.95
Effects of temperature and glycerol and methanol-feeding profiles on the production of recombinant galactose oxidase in Pichia pastoris. Biotechnol Prog (2014) 0.94
Physiological characterization of brewer's yeast in high-gravity beer fermentations with glucose or maltose syrups as adjuncts. Appl Microbiol Biotechnol (2009) 0.94
Comparative metabolic network analysis of two xylose fermenting recombinant Saccharomyces cerevisiae strains. Metab Eng (2005) 0.93
Lipidomic profiling of Saccharomyces cerevisiae and Zygosaccharomyces bailii reveals critical changes in lipid composition in response to acetic acid stress. PLoS One (2013) 0.91
Aerobic glucose metabolism of Saccharomyces kluyveri: growth, metabolite production, and quantification of metabolic fluxes. Biotechnol Bioeng (2002) 0.90
Characterization of very high gravity ethanol fermentation of corn mash. Effect of glucoamylase dosage, pre-saccharification and yeast strain. Appl Microbiol Biotechnol (2005) 0.90
Studies of the production of fungal polyketides in Aspergillus nidulans by using systems biology tools. Appl Environ Microbiol (2009) 0.90
Efficiencies of acid catalysts in the hydrolysis of lignocellulosic biomass over a range of combined severity factors. Bioresour Technol (2011) 0.90
Engineering glutathione biosynthesis of Saccharomyces cerevisiae increases robustness to inhibitors in pretreated lignocellulosic materials. Microb Cell Fact (2013) 0.90
Scale-up study of oxalic acid pretreatment of agricultural lignocellulosic biomass for the production of bioethanol. Bioresour Technol (2011) 0.88
Xylitol production by a Pichia stipitis D-xylulokinase mutant. Appl Microbiol Biotechnol (2005) 0.88
SHAM-sensitive alternative respiration in the xylose-metabolizing yeast Pichia stipitis. Yeast (2002) 0.88
Physiological characterization of glucose repression in the strains with SNF1 and SNF4 genes deleted. J Biotechnol (2007) 0.87
Determination of cell mass and polymyxin using multi-wavelength fluorescence. J Biotechnol (2005) 0.87
Penicillium brasilianum as an enzyme factory; the essential role of feruloyl esterases for the hydrolysis of the plant cell wall. J Biotechnol (2007) 0.86
Fermentation characteristics of Fusariumoxysporum grown on acetate. Bioresour Technol (2008) 0.86
The effect of initial cell concentration on xylose fermentation by Pichia stipitis. Appl Biochem Biotechnol (2007) 0.86
Characterisation of the gene cluster for l-rhamnose catabolism in the yeast Scheffersomyces (Pichia) stipitis. Gene (2011) 0.86
The interplay of descriptor-based computational analysis with pharmacophore modeling builds the basis for a novel classification scheme for feruloyl esterases. Biotechnol Adv (2010) 0.85
Simultaneous saccharification and ethanol fermentation of oxalic acid pretreated corncob assessed with response surface methodology. Bioresour Technol (2009) 0.85
Impact of overexpressing NADH kinase on glucose and xylose metabolism in recombinant xylose-utilizing Saccharomyces cerevisiae. Appl Microbiol Biotechnol (2009) 0.85
Molecular characterization of a gene for aldose reductase ( CbXYL1) from Candida boidinii and its expression in Saccharomyces cerevisiae. Appl Biochem Biotechnol (2003) 0.84
Rapid 2,2'-bicinchoninic-based xylanase assay compatible with high throughput screening. Biotechnol Lett (2003) 0.84
Production and partial characterization of arabinoxylan-degrading enzymes by Penicillium brasilianum under solid-state fermentation. Appl Microbiol Biotechnol (2006) 0.84
Identification of biomarkers for genotyping Aspergilli using non-linear methods for clustering and classification. BMC Bioinformatics (2008) 0.84
Overexpression of a novel endogenous NADH kinase in Aspergillus nidulans enhances growth. Metab Eng (2008) 0.83
Production of fungal alpha-amylase by Saccharomyces kluyveri in glucose-limited cultivations. J Biotechnol (2004) 0.83
Effects of aeration on growth, ethanol and polyol accumulation by Spathaspora passalidarum NRRL Y-27907 and Scheffersomyces stipitis NRRL Y-7124. Biotechnol Bioeng (2015) 0.82
Steady-state and transient-state analyses of aerobic fermentation in Saccharomyces kluyveri. FEMS Yeast Res (2002) 0.82
In situ laccase treatment enhances the fermentability of steam-exploded wheat straw in SSCF processes at high dry matter consistencies. Bioresour Technol (2013) 0.82
The interplay between sulphur and selenium metabolism influences the intracellular redox balance in Saccharomyces cerevisiae. FEMS Yeast Res (2011) 0.82
The beta-subunits of the Snf1 kinase in Saccharomyces cerevisiae, Gal83 and Sip2, but not Sip1, are redundant in glucose derepression and regulation of sterol biosynthesis. Mol Microbiol (2010) 0.81
Xylitol production from DEO hydrolysate of corn stover by Pichia stipitis YS-30. J Ind Microbiol Biotechnol (2011) 0.81
The roles of xylan and lignin in oxalic acid pretreated corncob during separate enzymatic hydrolysis and ethanol fermentation. Bioresour Technol (2010) 0.81
Growth and enzyme production by three Penicillium species on monosaccharides. J Biotechnol (2004) 0.80
Effects of gene orientation and use of multiple promoters on the expression of XYL1 and XYL2 in Saccharomyces cerevisiae. Appl Biochem Biotechnol (2007) 0.80
Response surface optimization of oxalic acid pretreatment of yellow poplar (Liriodendron tulipifera) for production of glucose and xylose monosaccarides. Bioresour Technol (2010) 0.80
On-line estimation of biomass, glucose and ethanol in Saccharomyces cerevisiae cultivations using in-situ multi-wavelength fluorescence and software sensors. J Biotechnol (2009) 0.79
Ethanolic fermentation of acid pre-treated starch industry effluents by recombinant Saccharomyces cerevisiae strains. Bioresour Technol (2005) 0.79
Experimental investigations of multiple steady states in aerobic continuous cultivations of Saccharomyces cerevisiae. Biotechnol Bioeng (2003) 0.79
Molecular characterization of the Hansenula polymorpha FLD1 gene encoding formaldehyde dehydrogenase. Yeast (2002) 0.79
Change in hyphal morphology of Aspergillus oryzae during fed-batch cultivation. Appl Microbiol Biotechnol (2005) 0.79
Teaching microbial physiology using glucose repression phenomenon in baker's yeast as an example. Biochem Mol Biol Educ (2005) 0.79
Long-term adaptation of Saccharomyces cerevisiae to the burden of recombinant insulin production. Biotechnol Bioeng (2013) 0.79
Metabolic and bioprocess engineering for production of selenized yeast with increased content of seleno-methylselenocysteine. Metab Eng (2011) 0.79
Physiological response of Saccharomyces cerevisiae to weak acids present in lignocellulosic hydrolysate. FEMS Yeast Res (2014) 0.79
Response surface methodology (RSM) to evaluate moisture effects on corn stover in recovering xylose by DEO hydrolysis. Bioresour Technol (2011) 0.79
On-line cell mass monitoring of Saccharomyces cerevisiae cultivations by multi-wavelength fluorescence. J Biotechnol (2004) 0.79
Second generation bioethanol production from Saccharum spontaneum L. ssp. aegyptiacum (Willd.) Hack. Bioresour Technol (2010) 0.78
Evaluation of ethanol production from corncob using Scheffersomyces (Pichia) stipitis CBS 6054 by volumetric scale-up. Appl Biochem Biotechnol (2011) 0.78
Physiological characterisation of acuB deletion in Aspergillus niger. Appl Microbiol Biotechnol (2009) 0.78
Fermentation kinetics for xylitol production by a Pichia stipitis D: -xylulokinase mutant previously grown in spent sulfite liquor. Appl Biochem Biotechnol (2007) 0.78
Adaptation of Saccharomyces cerevisiae expressing a heterologous protein. J Biotechnol (2008) 0.78
Sensor combination and chemometric variable selection for online monitoring of Streptomyces coelicolor fed-batch cultivations. Appl Microbiol Biotechnol (2010) 0.77
An optimized transformation protocol for Lipomyces starkeyi. Curr Genet (2014) 0.77
Combining substrate specificity analysis with support vector classifiers reveals feruloyl esterase as a phylogenetically informative protein group. PLoS One (2010) 0.77
Gene deletion of cytosolic ATP: citrate lyase leads to altered organic acid production in Aspergillus niger. J Ind Microbiol Biotechnol (2009) 0.77
Common and distant structural characteristics of feruloyl esterase families from Aspergillus oryzae. PLoS One (2012) 0.77
Modulating heterologous protein production in yeast: the applicability of truncated auxotrophic markers. Appl Microbiol Biotechnol (2012) 0.77