Published in Methods Mol Biol on January 01, 2007
Insulin-like 3 exposure of the fetal rat gubernaculum modulates expression of genes involved in neural pathways. Biol Reprod (2010) 1.47
Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse. BMC Genomics (2010) 1.38
Temporal and functional profile of the transcriptional regulatory network in the early regenerative response to partial hepatectomy in the rat. BMC Genomics (2008) 1.07
Gene expression profiling of human alveolar macrophages infected by B. anthracis spores demonstrates TNF-alpha and NF-kappab are key components of the innate immune response to the pathogen. BMC Infect Dis (2009) 0.93
Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. BMC Syst Biol (2010) 0.90
Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus. PLoS One (2012) 0.86
Effect of protein kinase C delta (PKC-δ) inhibition on the transcriptome of normal and systemic sclerosis human dermal fibroblasts in vitro. PLoS One (2011) 0.84
Gene Expression Under the Influence: Transcriptional Profiling of Ethanol in the Brain. Curr Psychopharmacol (2012) 0.82
Expression of V3 Versican by Rat Arterial Smooth Muscle Cells Promotes Differentiated and Anti-inflammatory Phenotypes. J Biol Chem (2015) 0.80
Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis. Nucleic Acids Res (2011) 0.80
myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks. BMC Dev Biol (2009) 0.80
Regulation of Transcriptional Networks by PKC Isozymes: Identification of c-Rel as a Key Transcription Factor for PKC-Regulated Genes. PLoS One (2013) 0.79
Identifying context-specific transcription factor targets from prior knowledge and gene expression data. IEEE Trans Nanobioscience (2013) 0.77
Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network. Genome Res (2003) 2.09
PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification. OMICS (2003) 1.77
Decorin protein core affects the global gene expression profile of the tumor microenvironment in a triple-negative orthotopic breast carcinoma xenograft model. PLoS One (2012) 1.09
Temporal and functional profile of the transcriptional regulatory network in the early regenerative response to partial hepatectomy in the rat. BMC Genomics (2008) 1.07
Erythroid-induced commitment of K562 cells results in clusters of differentially expressed genes enriched for specific transcription regulatory elements. Physiol Genomics (2004) 1.02
MicroRNA profiling in lung cancer reveals new molecular markers for diagnosis. Acta Cytol (2012) 1.01
Chronic ethanol feeding alters miRNA expression dynamics during liver regeneration. Alcohol Clin Exp Res (2012) 0.93
Dynamic transcriptomic response to acute hypertension in the nucleus tractus solitarius. Am J Physiol Regul Integr Comp Physiol (2008) 0.93
Adaptive transcriptional dynamics of A2 neurons and central cardiovascular control pathways. Exp Physiol (2011) 0.90
Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. BMC Syst Biol (2010) 0.90
Effects of developmental lead exposure on the hippocampal transcriptome: influences of sex, developmental period, and lead exposure level. Toxicol Sci (2012) 0.89
The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa. BMC Physiol (2006) 0.87
Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus. PLoS One (2012) 0.86
A universal reference sample derived from clone vector for improved detection of differential gene expression. BMC Genomics (2006) 0.86
Continuous-time identification of gene expression models. OMICS (2003) 0.85
Bladder inflammatory transcriptome in response to tachykinins: neurokinin 1 receptor-dependent genes and transcription regulatory elements. BMC Urol (2007) 0.85
Chronic ethanol feeding enhances miR-21 induction during liver regeneration while inhibiting proliferation in rats. Am J Physiol Gastrointest Liver Physiol (2012) 0.85
Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei. J Neuroinflammation (2012) 0.84
Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius. Physiol Genomics (2005) 0.84
Ethanol diverts early neuronal differentiation trajectory of embryonic stem cells by disrupting the balance of lineage specifiers. PLoS One (2013) 0.83
A fast carrier chromatin immunoprecipitation method applicable to microdissected tissue samples. J Neurosci Methods (2008) 0.83
Ethanol alters the balance of Sox2, Oct4, and Nanog expression in distinct subpopulations during differentiation of embryonic stem cells. Stem Cells Dev (2013) 0.83
Transcriptional regulatory network analysis during epithelial-mesenchymal transformation of retinal pigment epithelium. Mol Vis (2008) 0.81
Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling. Genome Biol (2006) 0.81
Adiponectin fine-tuning of liver regeneration dynamics revealed through cellular network modelling. J Physiol (2015) 0.79
Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. Alcohol Clin Exp Res (2012) 0.78
Epidermal growth factor receptor-induced circadian-time-dependent gene regulation in suprachiasmatic nucleus. Neuroreport (2006) 0.77
Molecular modeling of ErbB4/HER4 kinase in the context of the HER4 signaling network helps rationalize the effects of clinically identified HER4 somatic mutations on the cell phenotype. Biotechnol J (2013) 0.77
The neuroscience-systems biology disconnect: towards the NeuroPhysiome. Exp Physiol (2012) 0.75
Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. IEEE Trans Biomed Eng (2016) 0.75
Structural properties of gene regulatory networks: definitions and connections. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.75