Published in PLoS One on March 05, 2008
Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes. Proc Natl Acad Sci U S A (2013) 2.26
Lake Tanganyika--a 'melting pot' of ancient and young cichlid lineages (Teleostei: Cichlidae)? PLoS One (2015) 1.48
Unparalleled rates of species diversification in Europe. Proc Biol Sci (2010) 1.25
Old fossils-young species: evolutionary history of an endemic gastropod assemblage in Lake Malawi. Proc Biol Sci (2009) 1.09
Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales. Evol Biol (2012) 1.08
A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evol Biol (2011) 1.01
Evolutionary history of the Lake Tanganyika cichlid tribe Lamprologini (Teleostei: Perciformes) derived from mitochondrial and nuclear DNA data. Mol Phylogenet Evol (2010) 1.00
Explosive diversification following a benthic to pelagic shift in freshwater fishes. BMC Evol Biol (2013) 0.94
A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach. Mol Phylogenet Evol (2014) 0.92
Mastacembelid eels support Lake Tanganyika as an evolutionary hotspot of diversification. BMC Evol Biol (2010) 0.86
Temporal diversification of Central American cichlids. BMC Evol Biol (2010) 0.85
Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes. PLoS One (2015) 0.83
Temporal patterns of diversification across global cichlid biodiversity (Acanthomorpha: Cichlidae). PLoS One (2013) 0.83
Expertly validated models and phylogenetically-controlled analysis suggests responses to climate change are related to species traits in the order lagomorpha. PLoS One (2015) 0.81
Immune-related functions of the Hivep gene family in East African cichlid fishes. G3 (Bethesda) (2013) 0.78
Molecular characterization of two endothelin pathways in East African cichlid fishes. J Mol Evol (2012) 0.78
Rugged adaptive landscapes shape a complex, sympatric radiation. Proc Biol Sci (2016) 0.75
SUNPLIN: simulation with uncertainty for phylogenetic investigations. BMC Bioinformatics (2013) 0.75
Niche divergence facilitated by fine-scale ecological partitioning in a recent cichlid fish adaptive radiation. Evolution (2016) 0.75
Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes. ISME J (2017) 0.75
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 130.85
MODELTEST: testing the model of DNA substitution. Bioinformatics (1998) 101.19
BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol (2007) 74.13
APE: Analyses of Phylogenetics and Evolution in R language. Bioinformatics (2004) 39.31
Relaxed phylogenetics and dating with confidence. PLoS Biol (2006) 37.68
The delayed rise of present-day mammals. Nature (2007) 15.98
CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics (2001) 11.90
An approximately unbiased test of phylogenetic tree selection. Syst Biol (2002) 11.00
The reconstructed evolutionary process. Philos Trans R Soc Lond B Biol Sci (1994) 8.89
Getting the measure of biodiversity. Nature (2000) 6.17
Darwin's abominable mystery: Insights from a supertree of the angiosperms. Proc Natl Acad Sci U S A (2004) 5.41
Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature (1990) 5.34
Increased taxon sampling greatly reduces phylogenetic error. Syst Biol (2002) 4.75
Testing macro-evolutionary models using incomplete molecular phylogenies. Proc Biol Sci (2000) 4.63
Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proc Natl Acad Sci U S A (1998) 4.02
African cichlid fish: a model system in adaptive radiation research. Proc Biol Sci (2006) 3.20
Closing of the Indonesian seaway as a precursor to east African aridification around 3-4 million years ago. Nature (2001) 3.01
Age of cichlids: new dates for ancient lake fish radiations. Mol Biol Evol (2007) 2.50
Dynamic patterns of adaptive radiation. Proc Natl Acad Sci U S A (2005) 2.48
Inferring speciation rates from phylogenies. Evolution (2001) 2.45
Speciation in rapidly diverging systems: lessons from Lake Malawi. Mol Ecol (2001) 2.44
Out of Tanganyika: genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes. BMC Evol Biol (2005) 2.42
Late Pleistocene Desiccation of Lake Victoria and Rapid Evolution of Cichlid Fishes Science (1996) 2.31
Molecular phylogeny of the carnivora (mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Syst Biol (2005) 2.25
Phylogenetics and speciation. Trends Ecol Evol (2001) 2.25
Macroevolutionary inferences from primate phylogeny. Proc Biol Sci (1995) 1.91
Global diversification rates of passerine birds. Proc Biol Sci (2003) 1.77
Lake level fluctuations synchronize genetic divergences of cichlid fishes in African lakes. Mol Biol Evol (2001) 1.74
Recent diversification rates in North American tiger beetles estimated from a dated mtDNA phylogenetic tree. Mol Biol Evol (2002) 1.70
The origin and age of haplochromine fishes in Lake Victoria, east Africa. Proc Biol Sci (2000) 1.59
Laboratory mating trials indicate incipient speciation by sexual selection among populations of the cichlid fish Pseudotropheus zebra from Lake Malawi. Proc Biol Sci (2004) 1.51
Using SINEs to probe ancient explosive speciation: "hidden" radiation of African cichlids? Mol Biol Evol (2003) 1.21
Environment, area, and diversification in the species-rich flowering plant family Iridaceae. Am Nat (2005) 1.10
Comparative phylogenetic analyses of the adaptive radiation of Lake Tanganyika cichlid fish: nuclear sequences are less homoplasious but also less informative than mitochondrial DNA. J Mol Evol (2005) 0.99
Molecular evidence for recent divergence of Lake Tanganyika endemic crabs (Decapoda: Platythelphusidae). Mol Phylogenet Evol (2006) 0.98
On the origin of the Synodontis catfish species flock from Lake Tanganyika. Biol Lett (2006) 0.82
Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Syst Biol (2006) 7.36
Darwin's abominable mystery: Insights from a supertree of the angiosperms. Proc Natl Acad Sci U S A (2004) 5.41
DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci U S A (2008) 4.97
A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science (2007) 3.75
Independently evolving species in asexual bdelloid rotifers. PLoS Biol (2007) 3.05
Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Syst Biol (2009) 2.79
Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Syst Biol (2013) 2.36
The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records. Philos Trans R Soc Lond B Biol Sci (2008) 2.25
The effect of geographical scale of sampling on DNA barcoding. Syst Biol (2012) 2.22
Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome Res (2011) 2.21
Speciation has a spatial scale that depends on levels of gene flow. Am Nat (2010) 2.16
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathog (2011) 2.09
Supertrees disentangle the chimerical origin of eukaryotic genomes. Mol Biol Evol (2007) 1.92
Environmental energy and evolutionary rates in flowering plants. Proc Biol Sci (2004) 1.84
Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils. Proc Natl Acad Sci U S A (2002) 1.82
Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions. Mol Phylogenet Evol (2002) 1.78
Species interactions alter evolutionary responses to a novel environment. PLoS Biol (2012) 1.75
Convergent sequence evolution between echolocating bats and dolphins. Curr Biol (2010) 1.73
Genome-wide signatures of convergent evolution in echolocating mammals. Nature (2013) 1.59
Phylogenomic analyses elucidate the evolutionary relationships of bats. Curr Biol (2013) 1.56
The peculiar epidemiology of dracunculiasis in Chad. Am J Trop Med Hyg (2013) 1.52
The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biol (2014) 1.51
Species co-existence and character divergence across carnivores. Ecol Lett (2007) 1.48
The hearing gene Prestin reunites echolocating bats. Proc Natl Acad Sci U S A (2008) 1.44
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biol (2013) 1.44
Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. PLoS Pathog (2012) 1.44
The evolution of color vision in nocturnal mammals. Proc Natl Acad Sci U S A (2009) 1.41
Extreme levels of hidden diversity in microscopic animals (Rotifera) revealed by DNA taxonomy. Mol Phylogenet Evol (2009) 1.41
The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna. Proc Natl Acad Sci U S A (2012) 1.40
Measuring support and finding unsupported relationships in supertrees. Syst Biol (2005) 1.39
Testing Darwin's naturalization hypothesis in the Azores. Ecol Lett (2011) 1.36
The prokaryotic tree of life: past, present... and future? Trends Ecol Evol (2008) 1.36
Biochemical diversification through foreign gene expression in bdelloid rotifers. PLoS Genet (2012) 1.35
Causes of plant diversification in the Cape biodiversity hotspot of South Africa. Syst Biol (2011) 1.30
Environmental causes for plant biodiversity gradients. Philos Trans R Soc Lond B Biol Sci (2004) 1.26
The shape of supertrees to come: tree shape related properties of fourteen supertree methods. Syst Biol (2005) 1.22
The effects of above- and belowground mutualisms on orchid speciation and coexistence. Am Nat (2011) 1.18
Diversification of the African genus Protea (Proteaceae) in the Cape biodiversity hotspot and beyond: equal rates in different biomes. Evolution (2009) 1.15
Molecular evidence for broad-scale distributions in bdelloid rotifers: everything is not everywhere but most things are very widespread. Mol Ecol (2008) 1.14
Environment, area, and diversification in the species-rich flowering plant family Iridaceae. Am Nat (2005) 1.10
Speciation and DNA barcodes: testing the effects of dispersal on the formation of discrete sequence clusters. Philos Trans R Soc Lond B Biol Sci (2008) 1.09
Properties of supertree methods in the consensus setting. Syst Biol (2007) 1.01
Deep mtDNA subdivision within Linnean species in an endemic radiation of tiger beetles from New Zealand (genus Neocicindela). Mol Phylogenet Evol (2011) 1.00
The geographical pattern of speciation and floral diversification in the neotropics: the tribe sinningieae (gesneriaceae) as a case study. Evolution (2007) 0.99
Relative time scales reveal multiple origins of parallel disjunct distributions of African caecilian amphibians. Biol Lett (2007) 0.98
Bacterial recombination promotes the evolution of multi-drug-resistance in functionally diverse populations. Proc Biol Sci (2011) 0.98
The evolutionary reality of higher taxa in mammals. Proc Biol Sci (2014) 0.97
Cetaceans on a molecular fast track to ultrasonic hearing. Curr Biol (2010) 0.97
The effects of temperature, pH and sulphide on the community structure of hyperthermophilic streamers in hot springs of northern Thailand. FEMS Microbiol Ecol (2007) 0.95
The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods. BMC Evol Biol (2008) 0.93
Integrating ecology into macroevolutionary research. Biol Lett (2011) 0.89
Phylogenetics of pond and lake lifestyles in Chaoborus midge larvae. Evolution (2003) 0.87
New approaches for unravelling reassortment pathways. BMC Evol Biol (2013) 0.84
Experimental design in caecilian systematics: phylogenetic information of mitochondrial genomes and nuclear rag1. Syst Biol (2009) 0.83
Pollinators underestimated: a molecular phylogeny reveals widespread floral convergence in oil-secreting orchids (sub-tribe Coryciinae) of the Cape of South Africa. Mol Phylogenet Evol (2008) 0.83
Testing the link between population genetic differentiation and clade diversification in Costa Rican orchids. Evolution (2012) 0.82
Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes. Int J Parasitol (2013) 0.82
Spatial predictions of phylogenetic diversity in conservation decision making. Conserv Biol (2011) 0.82
Do global diversity patterns of vertebrates reflect those of monocots? PLoS One (2013) 0.82
Sexual species are separated by larger genetic gaps than asexual species in rotifers. Evolution (2014) 0.79
The evolution of bat vestibular systems in the face of potential antagonistic selection pressures for flight and echolocation. PLoS One (2013) 0.79
The role of Notch signalling and numb function in mechanosensory organ formation in the spider Cupiennius salei. Dev Biol (2008) 0.79
Late Miocene lineage divergence and ecological differentiation of rare endemic Juniperus blancoi: clues for the diversification of North American conifers. New Phytol (2014) 0.78
Ecology has contrasting effects on genetic variation within species versus rates of molecular evolution across species in water beetles. Proc Biol Sci (2015) 0.78
Experimental design in phylogenetics: testing predictions from expected information. Syst Biol (2012) 0.76
Multiple functionally divergent and conserved copies of alpha tubulin in bdelloid rotifers. BMC Evol Biol (2012) 0.76
Stops making sense: translational trade-offs and stop codon reassignment. BMC Evol Biol (2011) 0.75
The Effect of Immigration on the Adaptation of Microbial Communities to Warming. Am Nat (2015) 0.75