Published in Biophys J on March 07, 2008
Intrinsic flexibility of B-DNA: the experimental TRX scale. Nucleic Acids Res (2009) 1.02
Oligonucleotide sequence motifs as nucleosome positioning signals. PLoS One (2010) 0.85
Prediction of nucleosome positioning based on transcription factor binding sites. PLoS One (2010) 0.83
Analysis of nucleosome positioning determined by DNA helix curvature in the human genome. BMC Genomics (2011) 0.80
Transcriptional regulatory code of a eukaryotic genome. Nature (2004) 27.21
A genomic code for nucleosome positioning. Nature (2006) 15.38
Genome-scale identification of nucleosome positions in S. cerevisiae. Science (2005) 15.04
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature (2007) 8.68
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes. Proc Natl Acad Sci U S A (1998) 8.14
Nucleosome positions predicted through comparative genomics. Nat Genet (2006) 5.81
Nucleosome positioning signals in genomic DNA. Genome Res (2007) 4.99
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences. J Mol Biol (1999) 3.72
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. J Mol Biol (1996) 2.86
Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature. Biochemistry (1990) 1.58
Nucleosome structure and repair of N-methylpurines in the GAL1-10 genes of Saccharomyces cerevisiae. J Biol Chem (2002) 1.53
10-11 bp periodicities in complete genomes reflect protein structure and DNA folding. Bioinformatics (1999) 1.27
Nucleosome structural features and intrinsic properties of the TATAAACGCC repeat sequence. J Biol Chem (1999) 1.20
Sequence structure of human nucleosome DNA. J Biomol Struct Dyn (2006) 1.19
Long-range correlations between DNA bending sites: relation to the structure and dynamics of nucleosomes. J Mol Biol (2002) 1.17
Periodicities of 10-11bp as indicators of the supercoiled state of genomic DNA. J Mol Biol (2004) 1.05
Periodical polydeoxynucleotides and DNA curvature. Biochemistry (1989) 1.03
The sequence and de novo assembly of the giant panda genome. Nature (2009) 15.76
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor. Cell (2012) 5.62
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell (2012) 5.16
Somatic mutations in p85alpha promote tumorigenesis through class IA PI3K activation. Cancer Cell (2009) 4.47
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res (2007) 3.69
Expanding the genetic code. Annu Rev Biophys Biomol Struct (2006) 3.36
Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity. Proc Natl Acad Sci U S A (2012) 3.21
Loss of the tumor suppressor BAP1 causes myeloid transformation. Science (2012) 2.69
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proc Natl Acad Sci U S A (2014) 2.42
An endogenous positively selecting peptide enhances mature T cell responses and becomes an autoantigen in the absence of microRNA miR-181a. Nat Immunol (2009) 2.38
Modulation of prostate cancer genetic risk by omega-3 and omega-6 fatty acids. J Clin Invest (2007) 2.26
Oncogenic ERBB3 mutations in human cancers. Cancer Cell (2013) 2.06
A genetically encoded fluorescent amino acid. J Am Chem Soc (2006) 1.93
The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination. Nat Biotechnol (2004) 1.93
Calcineurin/NFAT signaling is required for neuregulin-regulated Schwann cell differentiation. Science (2009) 1.76
Distinct TCR signaling pathways drive proliferation and cytokine production in T cells. Nat Immunol (2013) 1.74
A genetically encoded metabolically stable analogue of phosphotyrosine in Escherichia coli. ACS Chem Biol (2007) 1.72
A genetically encoded infrared probe. J Am Chem Soc (2006) 1.71
A single peptide-major histocompatibility complex ligand triggers digital cytokine secretion in CD4(+) T cells. Immunity (2013) 1.62
Prediction of severe acute pancreatitis using classification and regression tree analysis. Dig Dis Sci (2011) 1.61
Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature. Bioinformatics (2008) 1.58
The fate of miRNA* strand through evolutionary analysis: implication for degradation as merely carrier strand or potential regulatory molecule? PLoS One (2010) 1.58
The crystal structure of the catalytic domain of the NF-κB inducing kinase reveals a narrow but flexible active site. Structure (2012) 1.57
A genetically encoded photocaged tyrosine. Angew Chem Int Ed Engl (2006) 1.56
Site-specific insertion of 3-aminotyrosine into subunit alpha2 of E. coli ribonucleotide reductase: direct evidence for involvement of Y730 and Y731 in radical propagation. J Am Chem Soc (2007) 1.54
Further replication studies of the EVE Consortium meta-analysis identifies 2 asthma risk loci in European Americans. J Allergy Clin Immunol (2012) 1.54
Signatures of surface states in bismuth at high magnetic fields. Phys Rev Lett (2009) 1.51
Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses. Biosystems (2005) 1.44
Genome characterization of the oleaginous fungus Mortierella alpina. PLoS One (2011) 1.43
Bcl-2 enhances the formation of newborn striatal long-projection neurons in adult rat brain after a transient ischemic stroke. Neurosci Bull (2012) 1.42
The associations of Janus kinase-2 (JAK2) A830G polymorphism and the treatment outcomes in patients with acute myeloid leukemia. Leuk Lymphoma (2010) 1.40
Gold-nanocrystal-enhanced bioluminescent nanocapsules. ACS Nano (2014) 1.39
Safety and immunogenicity of adenovirus-vectored near-consensus HIV type 1 clade B gag vaccines in healthy adults. AIDS Res Hum Retroviruses (2009) 1.36
Predictive models of autism spectrum disorder based on brain regional cortical thickness. Neuroimage (2009) 1.28
The incorporation of a photoisomerizable amino acid into proteins in E. coli. J Am Chem Soc (2006) 1.27
Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales. Virus Res (2004) 1.26
Comparative cell-mediated immunogenicity of DNA/DNA, DNA/adenovirus type 5 (Ad5), or Ad5/Ad5 HIV-1 clade B gag vaccine prime-boost regimens. J Infect Dis (2010) 1.26
A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing. PLoS One (2011) 1.26
Analysis of serum genome-wide microRNAs for breast cancer detection. Clin Chim Acta (2012) 1.25
Hyperacetylation of chromatin at the ADH2 promoter allows Adr1 to bind in repressed conditions. EMBO J (2002) 1.23
Exact fan-beam and 4pi-acquisition cone-beam SPECT algorithms with uniform attenuation correction. Med Phys (2005) 1.22
Kinetics and comparative reactivity of human class I and class IIb histone deacetylases. Biochemistry (2004) 1.22
A double-blind, placebo-controlled study of the safety and immunogenicity of live, oral type 4 and type 7 adenovirus vaccines in adults. Vaccine (2008) 1.22
Disruption of PH-kinase domain interactions leads to oncogenic activation of AKT in human cancers. Proc Natl Acad Sci U S A (2012) 1.22
The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens. Biosystems (2004) 1.19
Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer. Gigascience (2012) 1.18
Label-free hybridization detection of a single nucleotide mismatch by immobilization of molecular beacons on an agarose film. Nucleic Acids Res (2002) 1.18
Single-crystalline and monodisperse LaF3 triangular nanoplates from a single-source precursor. J Am Chem Soc (2005) 1.18
Next-generation sequencing of microRNAs for breast cancer detection. J Biomed Biotechnol (2011) 1.17
Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data. Comput Biol Chem (2010) 1.16
Decorin suppresses prostate tumor growth through inhibition of epidermal growth factor and androgen receptor pathways. Neoplasia (2009) 1.16
Safety and immunogenicity of the Merck adenovirus serotype 5 (MRKAd5) and MRKAd6 human immunodeficiency virus type 1 trigene vaccines alone and in combination in healthy adults. Clin Vaccine Immunol (2009) 1.13
Altered serum microRNAs as biomarkers for the early diagnosis of pulmonary tuberculosis infection. BMC Infect Dis (2012) 1.13
MRP2 and GSTP1 polymorphisms and chemotherapy response in advanced non-small cell lung cancer. Cancer Chemother Pharmacol (2009) 1.13
Robust method for infrared small-target detection based on Boolean map visual theory. Appl Opt (2014) 1.13
MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes. PLoS One (2011) 1.10
The double-histone-acetyltransferase complex ATAC is essential for mammalian development. Mol Cell Biol (2008) 1.09
TN curve: a novel 3D graphical representation of DNA sequence based on trinucleotides and its applications. J Theor Biol (2009) 1.08
Multiple gene methylation of nonsmall cell lung cancers evaluated with 3-dimensional microarray. Cancer (2008) 1.08
Meta-analysis of several gene lists for distinct types of cancer: a simple way to reveal common prognostic markers. BMC Bioinformatics (2007) 1.04
White matter impairments in autism, evidence from voxel-based morphometry and diffusion tensor imaging. Brain Res (2009) 1.04
Analyzing brain networks with PCA and conditional Granger causality. Hum Brain Mapp (2009) 1.04
Changes of brain morphometry in first-episode, drug-naïve, non-late-life adult patients with major depression: an optimized voxel-based morphometry study. Biol Psychiatry (2010) 1.03
Application of next-generation sequencing technology to profile the circulating microRNAs in the serum of preeclampsia versus normal pregnant women. Clin Chim Acta (2011) 1.03
Efficient and robust method for comparing the immunogenicity of candidate vaccines in randomized clinical trials. Vaccine (2008) 1.03
Copper catalyzing growth of single-walled carbon nanotubes on substrates. Nano Lett (2006) 1.02
Receiver-operating characteristic analyses of body mass index, waist circumference and waist-to-hip ratio for obesity: Screening in young adults in central south of China. Clin Nutr (2006) 1.02
Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature. Proteins (2011) 1.01
Oxytocin deficiency impairs maternal skeletal remodeling. Biochem Biophys Res Commun (2009) 1.00
Comparison of T cell immune responses induced by vectored HIV vaccines in non-human primates and humans. Vaccine (2010) 0.99
Origin and evolution of a placental-specific microRNA family in the human genome. BMC Evol Biol (2010) 0.99
A modified technology could significantly improve the visualization rate of the internal mammary sentinel lymph nodes in breast cancer patients. Breast Cancer Res Treat (2012) 0.98
Unnatural amino acid mutagenesis of green fluorescent protein. J Org Chem (2003) 0.98
Voxel-based morphometry study on brain structure in children with high-functioning autism. Neuroreport (2008) 0.97
Association between polymorphisms of ERCC1 and XPD and clinical response to platinum-based chemotherapy in advanced non-small cell lung cancer. Am J Clin Oncol (2010) 0.96
Altered regional homogeneity patterns in adults with attention-deficit hyperactivity disorder. Eur J Radiol (2013) 0.96
Detecting directional influence in fMRI connectivity analysis using PCA based Granger causality. Brain Res (2009) 0.95
Quantitative analysis of promoter hypermethylation in multiple genes in osteosarcoma. Cancer (2006) 0.94
Cardioprotective effect of salvianolic acid B against arsenic trioxide-induced injury in cardiac H9c2 cells via the PI3K/Akt signal pathway. Toxicol Lett (2012) 0.94
Polyunsaturated fatty acids affect the localization and signaling of PIP3/AKT in prostate cancer cells. Carcinogenesis (2013) 0.94
Proteomic analysis of circulating monocytes in Chinese premenopausal females with extremely discordant bone mineral density. Proteomics (2008) 0.94
Time course of cortisol loss in hair segments under immersion in hot water. Clin Chim Acta (2011) 0.94
Oxidative stress suppression by luteolin-induced heme oxygenase-1 expression. Toxicol Appl Pharmacol (2012) 0.93
Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships. Mol Biol Rep (2012) 0.93
RFRCDB-siRNA: improved design of siRNAs by random forest regression model coupled with database searching. Comput Methods Programs Biomed (2007) 0.93
Safety and Immunogenicity of the MRKAd5 gag HIV Type 1 Vaccine in a Worldwide Phase 1 Study of Healthy Adults. AIDS Res Hum Retroviruses (2010) 0.93
HPLC-FLU detection of cortisol distribution in human hair. Clin Biochem (2010) 0.93
Cross-mapping events in miRNAs reveal potential miRNA-mimics and evolutionary implications. PLoS One (2011) 0.93
Association mapping of starch physicochemical properties with starch biosynthesizing genes in waxy rice (Oryza sativa L.). J Agric Food Chem (2013) 0.93
Detecting abnormalities of corpus callosum connectivity in autism using magnetic resonance imaging and diffusion tensor tractography. Psychiatry Res (2011) 0.93