Published in Nat Rev Genet on May 01, 2008
The developmental dynamics of the maize leaf transcriptome. Nat Genet (2010) 4.02
Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait. Nat Rev Genet (2010) 3.20
A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice. Nat Genet (2013) 1.92
The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a. Plant Physiol (2009) 1.60
Mitochondrial replacement in human oocytes carrying pathogenic mitochondrial DNA mutations. Nature (2016) 1.60
A chloroplast envelope-bound PHD transcription factor mediates chloroplast signals to the nucleus. Nat Commun (2011) 1.54
MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light. Plant Cell (2011) 1.43
Genome barriers between nuclei and mitochondria exemplified by cytoplasmic male sterility. Plant Cell Physiol (2008) 1.40
Plastidial glyceraldehyde-3-phosphate dehydrogenase deficiency leads to altered root development and affects the sugar and amino acid balance in Arabidopsis. Plant Physiol (2009) 1.38
Chloroplast-mediated activation of plant immune signalling in Arabidopsis. Nat Commun (2012) 1.31
Mitochondrial genomes gleaned from human whole-exome sequencing. Nat Methods (2012) 1.30
A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis. Plant Cell (2013) 1.26
Plant homologs of the Plasmodium falciparum chloroquine-resistance transporter, PfCRT, are required for glutathione homeostasis and stress responses. Proc Natl Acad Sci U S A (2010) 1.24
Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. Proc Natl Acad Sci U S A (2011) 1.16
An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation. Plant Cell (2011) 1.16
Chloroplast biogenesis: control of plastid development, protein import, division and inheritance. Arabidopsis Book (2008) 1.15
De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. BMC Plant Biol (2012) 1.13
Leucine-rich pentatricopeptide-repeat containing protein regulates mitochondrial transcription. Biochemistry (2010) 1.13
From chloroplasts to "cryptic" plastids: evolution of plastid genomes in parasitic plants. Curr Genet (2008) 1.12
Reactive oxygen species and transcript analysis upon excess light treatment in wild-type Arabidopsis thaliana vs a photosensitive mutant lacking zeaxanthin and lutein. BMC Plant Biol (2011) 1.12
Genome-wide analysis of plastid gene expression in potato leaf chloroplasts and tuber amyloplasts: transcriptional and posttranscriptional control. Plant Physiol (2009) 1.12
Spontaneous dominant mutations in chlamydomonas highlight ongoing evolution by gene diversification. Plant Cell (2015) 1.09
Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis. Genome Biol Evol (2011) 1.09
Mutation of the pentatricopeptide repeat-SMR protein SVR7 impairs accumulation and translation of chloroplast ATP synthase subunits in Arabidopsis thaliana. J Plant Res (2012) 1.08
Plastids are major regulators of light signaling in Arabidopsis. Plant Physiol (2012) 1.07
Sigma factor-mediated plastid retrograde signals control nuclear gene expression. Plant J (2012) 1.07
Mitochondrial biogenesis and function in Arabidopsis. Arabidopsis Book (2008) 1.06
An Uncharacterized Apocarotenoid-Derived Signal Generated in ζ-Carotene Desaturase Mutants Regulates Leaf Development and the Expression of Chloroplast and Nuclear Genes in Arabidopsis. Plant Cell (2014) 1.06
Genome analysis of Elysia chlorotica Egg DNA provides no evidence for horizontal gene transfer into the germ line of this Kleptoplastic Mollusc. Mol Biol Evol (2013) 1.05
Photosynthetic redox imbalance governs leaf sectoring in the Arabidopsis thaliana variegation mutants immutans, spotty, var1, and var2. Plant Cell (2009) 1.05
Arabidopsis Tic40 expression in tobacco chloroplasts results in massive proliferation of the inner envelope membrane and upregulation of associated proteins. Plant Cell (2008) 1.03
The Arabidopsis plastid-signalling mutant gun1 (genomes uncoupled1) shows altered sensitivity to sucrose and abscisic acid and alterations in early seedling development. J Exp Bot (2010) 1.02
Genetic regulation and structural changes during tomato fruit development and ripening. Front Plant Sci (2014) 1.00
Participation of leaky ribosome scanning in protein dual targeting by alternative translation initiation in higher plants. Plant Cell (2009) 1.00
Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene. Genome Biol Evol (2012) 0.99
Noncoding RNA mediated traffic of foreign mRNA into chloroplasts reveals a novel signaling mechanism in plants. PLoS One (2010) 0.97
Circadian clock adjustment to plant iron status depends on chloroplast and phytochrome function. EMBO J (2012) 0.96
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses. J Biol Chem (2012) 0.96
Efficient acclimation of the chloroplast antioxidant defence of Arabidopsis thaliana leaves in response to a 10- or 100-fold light increment and the possible involvement of retrograde signals. J Exp Bot (2011) 0.95
Reciprocal regulation of protein synthesis and carbon metabolism for thylakoid membrane biogenesis. PLoS Biol (2013) 0.95
Identification of plant RAD52 homologs and characterization of the Arabidopsis thaliana RAD52-like genes. Plant Cell (2011) 0.94
Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level. Plant Physiol (2012) 0.94
Intracompartmental and intercompartmental transcriptional networks coordinate the expression of genes for organellar functions. Plant Physiol (2011) 0.94
Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis thaliana leaf development. PLoS Genet (2013) 0.94
AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis. Proc Natl Acad Sci U S A (2012) 0.93
Incompatibility between Nuclear and Mitochondrial Genomes Contributes to an Interspecies Reproductive Barrier. Cell Metab (2016) 0.93
The importance of cardiolipin synthase for mitochondrial ultrastructure, respiratory function, plant development, and stress responses in Arabidopsis. Plant Cell (2013) 0.93
The chloroplast DnaJ homolog CDJ1 of Chlamydomonas reinhardtii is part of a multichaperone complex containing HSP70B, CGE1, and HSP90C. Plant Physiol (2008) 0.92
Deficient plastidic fatty acid synthesis triggers cell death by modulating mitochondrial reactive oxygen species. Cell Res (2015) 0.92
ABI4 and its role in chloroplast retrograde communication. Front Plant Sci (2013) 0.92
Light-harvesting chlorophyll a/b-binding proteins, positively involved in abscisic acid signalling, require a transcription repressor, WRKY40, to balance their function. J Exp Bot (2013) 0.92
Coordination of plastid and light signaling pathways upon development of Arabidopsis leaves under various photoperiods. Mol Plant (2011) 0.91
A var2 leaf variegation suppressor locus, SUPPRESSOR OF VARIEGATION3, encodes a putative chloroplast translation elongation factor that is important for chloroplast development in the cold. BMC Plant Biol (2010) 0.91
Chloroplast signaling within, between and beyond cells. Front Plant Sci (2015) 0.91
Nuclear transcription factors in mammalian mitochondria. Genome Biol (2010) 0.91
A comparative analysis of mitochondrial ORFans: new clues on their origin and role in species with doubly uniparental inheritance of mitochondria. Genome Biol Evol (2013) 0.91
CHILD: a new tool for detecting low-abundance insertions and deletions in standard sequence traces. Nucleic Acids Res (2011) 0.91
Transfer of genetic material between the chloroplast and nucleus: how is it related to stress in plants? Ann Bot (2008) 0.90
Reconsidering the nature and mode of action of metabolite retrograde signals from the chloroplast. Front Plant Sci (2013) 0.90
The neglected genome. EMBO Rep (2012) 0.90
Chloroplasts extend stromules independently and in response to internal redox signals. Proc Natl Acad Sci U S A (2015) 0.89
Mitochondrially-targeted expression of a cytoplasmic male sterility-associated orf220 gene causes male sterility in Brassica juncea. BMC Plant Biol (2010) 0.88
Mitochondrial tRNA-lookalikes in nuclear chromosomes: could they be functional? RNA Biol (2015) 0.88
Comparative transcript profiling of the fertile and sterile flower buds of pol CMS in B. napus. BMC Genomics (2014) 0.87
How to build functional thylakoid membranes: from plastid transcription to protein complex assembly. Planta (2012) 0.87
Chloroplast redox imbalance governs phenotypic plasticity: the "grand design of photosynthesis" revisited. Front Plant Sci (2012) 0.87
Dissecting the integrative antioxidant and redox systems in plant mitochondria. Effect of stress and S-nitrosylation. Front Plant Sci (2013) 0.86
Hemin and magnesium-protoporphyrin IX induce global changes in gene expression in Chlamydomonas reinhardtii. Plant Physiol (2010) 0.86
Potential for increased photosynthetic performance and crop productivity in response to climate change: role of CBFs and gibberellic acid. Front Chem (2014) 0.86
Mitonuclear Epistasis for Development Time and Its Modification by Diet in Drosophila. Genetics (2016) 0.85
Chlorophyll-deficient mutants of Chlamydomonas reinhardtii that accumulate magnesium protoporphyrin IX. Plant Mol Biol (2010) 0.84
Organelle signaling: how stressed chloroplasts communicate with the nucleus. Curr Biol (2012) 0.84
Yeast AEP3p is an accessory factor in initiation of mitochondrial translation. J Biol Chem (2009) 0.84
Implication of chlorophyll biosynthesis on chloroplast-to-nucleus retrograde signaling. Plant Signal Behav (2009) 0.84
Availability of Rubisco small subunit up-regulates the transcript levels of large subunit for stoichiometric assembly of its holoenzyme in rice. Plant Physiol (2012) 0.84
tRNA biology in mitochondria. Int J Mol Sci (2015) 0.84
Can the import of mRNA into chloroplasts be mediated by a secondary structure of a small non-coding RNA? Plant Signal Behav (2010) 0.84
Rapamycin increases mitochondrial efficiency by mtDNA-dependent reprogramming of mitochondrial metabolism in Drosophila. J Cell Sci (2014) 0.84
The mitochondrial genome of an aquatic plant, Spirodela polyrhiza. PLoS One (2012) 0.83
Plastid Located WHIRLY1 Enhances the Responsiveness of Arabidopsis Seedlings Toward Abscisic Acid. Front Plant Sci (2012) 0.83
Subfunctionalization of sigma factors during the evolution of land plants based on mutant analysis of liverwort (Marchantia polymorpha L.) MpSIG1. Genome Biol Evol (2013) 0.83
The TOM complex is involved in the release of superoxide anion from mitochondria. J Bioenerg Biomembr (2009) 0.83
Rewiring of posttranscriptional RNA regulons: Puf4p in fungi as an example. Mol Biol Evol (2012) 0.82
GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis. Plant Physiol (2016) 0.82
Overexpression of UCP1 in tobacco induces mitochondrial biogenesis and amplifies a broad stress response. BMC Plant Biol (2014) 0.82
Mitonuclear Ecology. Mol Biol Evol (2015) 0.82
The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana. BMC Plant Biol (2012) 0.82
Overexpression of the Maize psbA Gene Enhances Drought Tolerance Through Regulating Antioxidant System, Photosynthetic Capability, and Stress Defense Gene Expression in Tobacco. Front Plant Sci (2016) 0.81
Elevated oxidative damage is correlated with reduced fitness in interpopulation hybrids of a marine copepod. Proc Biol Sci (2013) 0.81
Metabolic adaptation in transplastomic plants massively accumulating recombinant proteins. PLoS One (2011) 0.81
Plastid signalling under multiple conditions is accompanied by a common defect in RNA editing in plastids. J Exp Bot (2011) 0.81
Misexpression of a chloroplast aspartyl protease leads to severe growth defects and alters carbohydrate metabolism in Arabidopsis. Plant Physiol (2012) 0.81
Cytosine deaminase as a negative selectable marker for the microalgal chloroplast: a strategy for the isolation of nuclear mutations that affect chloroplast gene expression. Plant J (2014) 0.81
Abiotic Stresses: Insight into Gene Regulation and Protein Expression in Photosynthetic Pathways of Plants. Int J Mol Sci (2015) 0.81
PDS activity acts as a rheostat of retrograde signaling during early chloroplast biogenesis. Plant Signal Behav (2010) 0.81
Retrograde signaling from functionally heterogeneous plastids. Front Plant Sci (2012) 0.81
Horizontal gene transfer in plants. Funct Integr Genomics (2013) 0.80
Accelerated evolution of the mitochondrial genome in an alloplasmic line of durum wheat. BMC Genomics (2014) 0.80
Unraveling retrograde signaling pathways: finding candidate signaling molecules via metabolomics and systems biology driven approaches. Front Plant Sci (2012) 0.80
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Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. Proc Natl Acad Sci U S A (2008) 1.58
Signal transduction between the chloroplast and the nucleus. Plant Cell (2002) 1.53
Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. Plant J (2008) 1.46
The LKA gene is a BRASSINOSTEROID INSENSITIVE 1 homolog of pea. Plant J (2003) 1.45
Genomics tools for QTL analysis and gene discovery. Curr Opin Plant Biol (2004) 1.44
Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. Cell (2010) 1.40
The geminivirus nuclear shuttle protein is a virulence factor that suppresses transmembrane receptor kinase activity. Genes Dev (2004) 1.39
Extracellular leucine-rich repeats as a platform for receptor/coreceptor complex formation. Proc Natl Acad Sci U S A (2011) 1.34
The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. Plant Physiol (2005) 1.32
Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proc Natl Acad Sci U S A (2008) 1.30
Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. Development (2009) 1.30
Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Dev Biol (2007) 1.29
Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics (2009) 1.28
QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS One (2009) 1.28
The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. Genes Dev (2003) 1.28
New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. Proc Natl Acad Sci U S A (2008) 1.27
The impact of Arabidopsis on human health: diversifying our portfolio. Cell (2008) 1.27
Growth coordination and the shoot epidermis. Curr Opin Plant Biol (2007) 1.26
Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades. Plant J (2011) 1.26
Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. PLoS One (2011) 1.25
BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis. Plant Cell (2007) 1.23
A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development. Proc Natl Acad Sci U S A (2002) 1.20
Divergent perspectives on GM food. Nat Biotechnol (2002) 1.19
Methylation of a phosphatase specifies dephosphorylation and degradation of activated brassinosteroid receptors. Sci Signal (2011) 1.17
Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root. Proc Natl Acad Sci U S A (2013) 1.16
Tomato BRASSINOSTEROID INSENSITIVE1 is required for systemin-induced root elongation in Solanum pimpinellifolium but is not essential for wound signaling. Plant Cell (2007) 1.16
BRing it on: new insights into the mechanism of brassinosteroid action. J Exp Bot (2003) 1.15
Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles. Proc Natl Acad Sci U S A (2009) 1.14
Synergism of red and blue light in the control of Arabidopsis gene expression and development. Curr Biol (2009) 1.14
Plant receptor kinases: systemin receptor identified. Proc Natl Acad Sci U S A (2002) 1.10
Smoke-derived karrikin perception by the α/β-hydrolase KAI2 from Arabidopsis. Proc Natl Acad Sci U S A (2013) 1.09
The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. Plant Cell (2010) 1.08
A multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis. Plant J (2013) 1.07
Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc Natl Acad Sci U S A (2013) 1.06
An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development. Plant Mol Biol (2006) 1.06
Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding. PLoS Biol (2005) 1.05
HY5, Circadian Clock-Associated 1, and a cis-element, DET1 dark response element, mediate DET1 regulation of chlorophyll a/b-binding protein 2 expression. Plant Physiol (2003) 1.05