Published in BMC Genomics on March 31, 2008
Population genomics of transposable elements in Drosophila melanogaster. Mol Biol Evol (2010) 1.12
The Hmr and Lhr hybrid incompatibility genes suppress a broad range of heterochromatic repeats. PLoS Genet (2014) 1.00
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes. BMC Evol Biol (2009) 0.88
Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila. Mol Genet Genomics (2011) 0.83
Losing identity: structural diversity of transposable elements belonging to different classes in the genome of Anopheles gambiae. BMC Genomics (2012) 0.81
Osvaldo and Isis retrotransposons as markers of the Drosophila buzzatii colonisation in Australia. BMC Evol Biol (2011) 0.77
Expression of the Retrotransposon Helena Reveals a Complex Pattern of TE Deregulation in Drosophila Hybrids. PLoS One (2016) 0.76
TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes. Nucleic Acids Res (2017) 0.75
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47
Initial sequencing and analysis of the human genome. Nature (2001) 212.86
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol (2003) 102.57
T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol (2000) 57.88
Predicting coiled coils from protein sequences. Science (1991) 38.18
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci U S A (1990) 24.42
SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci (1996) 20.45
The paleontology of intergene retrotransposons of maize. Nat Genet (1998) 8.55
The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol (1999) 4.38
Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA. EMBO J (1996) 3.34
Genetics: junk DNA as an evolutionary force. Nature (2006) 3.10
An alternating least squares approach to inferring phylogenies from pairwise distances. Syst Biol (1997) 2.94
High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups. Mol Biol Evol (1998) 2.78
Transposable elements, gene creation and genome rearrangement in flowering plants. Curr Opin Genet Dev (2005) 2.62
Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates. Genome Res (2005) 2.46
Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genome Res (2001) 2.40
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc Natl Acad Sci U S A (2006) 2.05
LINE-1 RNA splicing and influences on mammalian gene expression. Nucleic Acids Res (2006) 1.94
Paleo-demography of the Drosophila melanogaster subgroup: application of the maximum likelihood method. Genes Genet Syst (1999) 1.55
Relatedness of baculovirus and gypsy retrotransposon envelope proteins. BMC Evol Biol (2001) 1.29
Fruit flies and humans respond differently to retrotransposons. Curr Opin Genet Dev (2002) 1.26
Sequence divergence within transposable element families in the Drosophila melanogaster genome. Genome Res (2003) 1.20
Wake up of transposable elements following Drosophila simulans worldwide colonization. Mol Biol Evol (1999) 1.19
The gag coding region of the Drosophila telomeric retrotransposon, HeT-A, has an internal frame shift and a length polymorphic region. J Mol Evol (1996) 1.17
The end of the LINE?: lack of recent L1 activity in a group of South American rodents. Genetics (2000) 1.16
I elements in Drosophila: in vivo retrotransposition and regulation. Cytogenet Genome Res (2005) 1.15
I elements and the Drosophila genome. Genetica (1992) 1.11
The recent evolution of human L1 retrotransposons. Cytogenet Genome Res (2005) 1.04
Widespread intron loss suggests retrotransposon activity in ancient apicomplexans. Mol Biol Evol (2007) 1.02
Transposable element dynamics in two sibling species: Drosophila melanogaster and Drosophila simulans. Genetica (2004) 0.89
Worldwide distribution of transposable element copy number in natural populations of Drosophila simulans. Evolution (2003) 0.87
New regulatory regions of Drosophila 412 retrotransposable element generated by recombination. Mol Biol Evol (2004) 0.86
Detection of transposable elements in Drosophila salivary gland polytene chromosomes by in situ hybridization. Methods Mol Biol (2004) 0.85
Ongoing loss of the tirant transposable element in natural populations of Drosophila simulans. Gene (2006) 0.85
Evolutionary forces generating sequence homogeneity and heterogeneity within retrotransposon families. Cytogenet Genome Res (2005) 0.85
Genome size as a mutation-selection-drift process. Genes Genet Syst (1999) 0.83
The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes. Gene (2006) 0.78
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
Genetics: junk DNA as an evolutionary force. Nature (2006) 3.10
Examining bacterial species under the specter of gene transfer and exchange. Proc Natl Acad Sci U S A (2005) 2.28
The source of laterally transferred genes in bacterial genomes. Genome Biol (2003) 1.87
Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome. Genome Res (2002) 1.73
Transposon proliferation in an asexual parasitoid. Mol Ecol (2012) 1.54
Dynamics of transposable elements: towards a community ecology of the genome. Trends Genet (2009) 1.33
Inbreeding effects in the epigenetic era. Nat Rev Genet (2010) 1.32
[Epidemiology of diabetes in urban and rural regions of Tlemcen (Western Algeria)]. Sante (2007) 1.25
Jumping genes and epigenetics: Towards new species. Gene (2010) 1.25
Sequence divergence within transposable element families in the Drosophila melanogaster genome. Genome Res (2003) 1.20
The trophic role of oligodendrocytes in the basal forebrain. J Neurosci (2003) 1.12
High genetic differentiation between the M and S molecular forms of Anopheles gambiae in Africa. PLoS One (2008) 1.08
Codon usage by transposable elements and their host genes in five species. J Mol Evol (2002) 0.98
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes. Gene (2010) 0.96
The dynamics of transposable elements in structured populations. Genetics (2004) 0.95
Differences in genome size between closely related species: the Drosophila melanogaster species subgroup. Mol Biol Evol (2005) 0.94
Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells. EMBO Rep (2013) 0.93
Sjögren's syndrome at the crossroad of polyautoimmunity. J Autoimmun (2012) 0.92
Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans. Genetics (2003) 0.92
Evolution of genome size in Drosophila. is the invader's genome being invaded by transposable elements? Mol Biol Evol (2002) 0.92
Transposable element dynamics in two sibling species: Drosophila melanogaster and Drosophila simulans. Genetica (2004) 0.89
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes. BMC Evol Biol (2009) 0.88
Are transposable elements simply silenced or are they under house arrest? Trends Genet (2009) 0.88
Worldwide distribution of transposable element copy number in natural populations of Drosophila simulans. Evolution (2003) 0.87
New regulatory regions of Drosophila 412 retrotransposable element generated by recombination. Mol Biol Evol (2004) 0.86
The relative abundance of dinucleotides in transposable elements in five species. Mol Biol Evol (2002) 0.86
Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica. J Mol Evol (2004) 0.86
tirant, a newly discovered active endogenous retrovirus in Drosophila simulans. J Virol (2012) 0.86
Beyond the body image: a qualitative study on how adults experience lower limb amputation. Clin Rehabil (2011) 0.86
Ongoing loss of the tirant transposable element in natural populations of Drosophila simulans. Gene (2006) 0.85
The endogenous retrovirus ENS-1 provides active binding sites for transcription factors in embryonic stem cells that specify extra embryonic tissue. Retrovirology (2012) 0.84
Evolvability, epigenetics and transposable elements. Biomol Concepts (2011) 0.84
Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila. Mol Genet Genomics (2011) 0.83
Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila. FASEB J (2009) 0.83
Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster. Gene (2009) 0.82
Role of bacterial peptidase F inferred by statistical analysis and further experimental validation. HFSP J (2008) 0.82
Variation of the genome size estimate with environmental conditions in Drosophila melanogaster. Cytometry A (2003) 0.81
The heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the Drosophila melanogaster genome. Gene (2008) 0.81
Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species. J Mol Evol (2010) 0.81
A snapshot of histone modifications within transposable elements in Drosophila wild type strains. PLoS One (2012) 0.80
A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans. J Environ Radioact (2012) 0.79
A bunch of fun-guys: the whole-genome view of yeast evolution. Trends Genet (2005) 0.79
Insertional variability of four transposable elements and population structure of the midge Chironomus riparius (Diptera). Mol Genet Genomics (2011) 0.79
Evolutionary pathways of the tirant LTR retrotransposon in the Drosophila melanogaster subgroup of species. J Mol Evol (2007) 0.78
A new genome-wide method to track horizontally transferred sequences: application to Drosophila. Genome Biol Evol (2014) 0.78
[Frequency of consanguineous unions in the Tlemcen area (West Algeria)]. Sante (2002) 0.78
The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes. Gene (2006) 0.78
[The influence of transposable elements on genome size]. J Soc Biol (2004) 0.77
TESD: a transposable element dynamics simulation environment. Bioinformatics (2006) 0.76
International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories. Mob DNA (2012) 0.75