Published in In Silico Biol on January 01, 2008
A novel network integrating a miRNA-203/SNAI1 feedback loop which regulates epithelial to mesenchymal transition. PLoS One (2012) 1.41
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model. BMC Bioinformatics (2011) 1.33
Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states. Nucleic Acids Res (2012) 0.95
The use of transcriptomics to unveil the role of nutrients in Mammalian liver. ISRN Nutr (2013) 0.78
Discovery and validation of a prostate cancer genomic classifier that predicts early metastasis following radical prostatectomy. PLoS One (2013) 2.31
Validation of a genomic classifier that predicts metastasis following radical prostatectomy in an at risk patient population. J Urol (2013) 2.07
Data standards for flow cytometry. OMICS (2006) 1.95
ADAM12 in human liver cancers: TGF-beta-regulated expression in stellate cells is associated with matrix remodeling. Hepatology (2003) 1.70
Human atrial ion channel and transporter subunit gene-expression remodeling associated with valvular heart disease and atrial fibrillation. Circulation (2005) 1.67
The disintegrin and metalloproteinase ADAM12 contributes to TGF-beta signaling through interaction with the type II receptor. J Cell Biol (2007) 1.38
Interleukin-33 overexpression is associated with liver fibrosis in mice and humans. J Cell Mol Med (2009) 1.36
Characterization of the expression of the hypoxia-induced genes neuritin, TXNIP and IGFBP3 in cancer. FEBS Lett (2006) 1.30
CXCR7 is up-regulated in human and murine hepatocellular carcinoma and is specifically expressed by endothelial cells. Eur J Cancer (2011) 1.26
Gene expression profile associated with chronic atrial fibrillation and underlying valvular heart disease in man. J Mol Cell Cardiol (2005) 1.20
Contrasting gene expression profiles in two canine models of atrial fibrillation. Circ Res (2007) 1.16
A statistical procedure to create a neighborhood socioeconomic index for health inequalities analysis. Int J Equity Health (2013) 1.14
Involvement of the serine/threonine p70S6 kinase in TGF-beta1-induced ADAM12 expression in cultured human hepatic stellate cells. J Hepatol (2005) 1.12
Genomic signatures predict migration and spawning failure in wild Canadian salmon. Science (2011) 1.10
Immunosuppressive drug-free operational immune tolerance in human kidney transplant recipients: Part I. Blood gene expression statistical analysis. J Cell Biochem (2008) 1.03
MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets. Bioinformatics (2011) 1.01
CX3CL1/fractalkine shedding by human hepatic stellate cells: contribution to chronic inflammation in the liver. J Cell Mol Med (2009) 1.00
Profile and management of patients treated for the first time for lower urinary tract symptoms/benign prostatic hyperplasia in four European countries. BJU Int (2008) 1.00
Regulation of intestinal epithelial cells transcriptome by enteric glial cells: impact on intestinal epithelial barrier functions. BMC Genomics (2009) 0.99
A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication. Nucleic Acids Res (2004) 0.98
Genomic "Dark Matter" in Prostate Cancer: Exploring the Clinical Utility of ncRNA as Biomarkers. Front Genet (2012) 0.96
Nutritional programming in the rat is linked to long-lasting changes in nutrient sensing and energy homeostasis in the hypothalamus. PLoS One (2010) 0.95
TNFalpha-mediated extracellular matrix remodeling is required for multiple division cycles in rat hepatocytes. Hepatology (2005) 0.93
Target genes of myostatin loss-of-function in muscles of late bovine fetuses. BMC Genomics (2007) 0.92
Profiling dendritic cell maturation with dedicated microarrays. J Leukoc Biol (2005) 0.90
Genome-wide analysis of host mRNA translation during hepatitis C virus infection. J Virol (2013) 0.89
RACK1, a new ADAM12 interacting protein. Contribution to liver fibrogenesis. J Biol Chem (2008) 0.87
Distinct molecular portraits of human failing hearts identified by dedicated cDNA microarrays. Eur J Heart Fail (2005) 0.87
MAPK signaling in cisplatin-induced death: predominant role of ERK1 over ERK2 in human hepatocellular carcinoma cells. Carcinogenesis (2012) 0.87
Transcriptome variations in human CaCo-2 cells: a model for enterocyte differentiation and its link to iron absorption. Genomics (2004) 0.86
In silico investigation of ADAM12 effect on TGF-beta receptors trafficking. BMC Res Notes (2009) 0.85
Molecular risk stratification in advanced heart failure patients. J Cell Mol Med (2009) 0.85
Cellular gene expression survey of PseudoRabies Virus (PRV) infected Human Embryonic Kidney cells (HEK-293). Vet Res (2006) 0.84
Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon (Oncorhynchus nerka). Ecol Evol (2012) 0.84
Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns. BMC Genomics (2011) 0.83
Identification of differentially expressed genes in human varicose veins: involvement of matrix gla protein in extracellular matrix remodeling. J Vasc Res (2007) 0.83
Upregulation of DNA repair genes in active cirrhosis associated with hepatocellular carcinoma. FEBS Lett (2005) 0.83
Evidence for a role of Smad3 and Smad2 in stabilization of the tumor-derived mutant Smad2.Q407R. J Biol Chem (2003) 0.83
New approach to oligonucleotide microarrays using zirconium phosphonate-modified surfaces. J Am Chem Soc (2004) 0.82
Dynamic regulation of Tgf-B signaling by Tif1γ: a computational approach. PLoS One (2012) 0.81
Upregulation of the tumor suppressor gene menin in hepatocellular carcinomas and its significance in fibrogenesis. Hepatology (2006) 0.80
Identification of ILK as a new partner of the ADAM12 disintegrin and metalloprotease in cell adhesion and survival. Mol Biol Cell (2012) 0.79
Measuring the evolution of ontology complexity: the gene ontology case study. PLoS One (2013) 0.79
Hepatocyte iron loading capacity is associated with differentiation and repression of motility in the HepaRG cell line. Genomics (2005) 0.79
Whole-transcriptome profiling of thyroid nodules identifies expression-based signatures for accurate thyroid cancer diagnosis. J Clin Endocrinol Metab (2013) 0.78
RNAi-based screening identifies kinases interfering with dioxin-mediated up-regulation of CYP1A1 activity. PLoS One (2011) 0.78
Toward new insights on the white blood cell differential by flow cytometry: a proof of concept study on the sepsis model. Cytometry B Clin Cytom (2012) 0.77
Metal phosphonates applied to biotechnologies: a novel approach to oligonucleotide microarrays. Chemistry (2005) 0.77
Towards zirconium phosphonate-based microarrays for probing DNA-protein interactions: critical influence of the location of the probe anchoring groups. J Am Chem Soc (2008) 0.77
Testing and improving experimental parameters for the use of low molecular weight targets in array-CGH experiments. Hum Mutat (2006) 0.76
Integrative analysis of high-throughput RNAi screen data identifies the FER and CRKL tyrosine kinases as new regulators of the mitogenic ERK-dependent pathways in transformed cells. BMC Genomics (2014) 0.76
Gene expression profiling in human cardiovascular disease. Clin Chem Lab Med (2005) 0.76
Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns. BMC Bioinformatics (2011) 0.75