Published in Annu Rev Biophys on January 01, 2008
Regulatory RNAs in bacteria. Cell (2009) 9.57
SHAPE-directed RNA secondary structure prediction. Methods (2010) 2.40
Riboswitches: structures and mechanisms. Cold Spring Harb Perspect Biol (2011) 1.75
On the significance of an RNA tertiary structure prediction. RNA (2010) 1.61
A polyhedron made of tRNAs. Nat Chem (2010) 1.46
Analysis of four-way junctions in RNA structures. J Mol Biol (2009) 1.37
Computational approaches to RNA structure prediction, analysis, and design. Curr Opin Struct Biol (2011) 1.28
Transposable elements in disease-associated cryptic exons. Hum Genet (2009) 1.28
An unusual topological structure of the HIV-1 Rev response element. Cell (2013) 1.26
Cooperative tertiary interaction network guides RNA folding. Cell (2012) 1.21
BPS: a database of RNA base-pair structures. Nucleic Acids Res (2008) 1.19
Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity. J Am Chem Soc (2012) 1.18
Visualizing large RNA molecules in solution. RNA (2011) 1.15
Motions of the substrate recognition duplex in a group I intron assessed by site-directed spin labeling. J Am Chem Soc (2009) 1.10
Tertiary motifs revealed in analyses of higher-order RNA junctions. J Mol Biol (2009) 1.10
A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains. Genes Dev (2014) 1.09
Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease. J Am Chem Soc (2010) 1.06
Structure and mechanism of purine-binding riboswitches. Q Rev Biophys (2012) 1.06
Structural basis of the non-coding RNA RsmZ acting as a protein sponge. Nature (2014) 1.04
Recognition of S-adenosylmethionine by riboswitches. Wiley Interdiscip Rev RNA (2011) 1.03
Emerging structural themes in large RNA molecules. Curr Opin Struct Biol (2011) 1.00
Predicting coaxial helical stacking in RNA junctions. Nucleic Acids Res (2011) 0.99
RNA dynamics: perspectives from spin labels. Wiley Interdiscip Rev RNA (2011) 0.99
Structure and function of the T-loop structural motif in noncoding RNAs. Wiley Interdiscip Rev RNA (2013) 0.99
Global structure of a three-way junction in a phi29 packaging RNA dimer determined using site-directed spin labeling. J Am Chem Soc (2012) 0.98
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The RNA backbone plays a crucial role in mediating the intrinsic stability of the GpU dinucleotide platform and the GpUpA/GpA miniduplex. Nucleic Acids Res (2010) 0.94
Novel cis-acting element within the capsid-coding region enhances flavivirus viral-RNA replication by regulating genome cyclization. J Virol (2013) 0.90
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. BMC Bioinformatics (2010) 0.89
Sequence-structure relationships in yeast mRNAs. Nucleic Acids Res (2011) 0.86
Multivalent binding oligomers inhibit HIV Tat-TAR interaction critical for viral replication. Bioorg Med Chem Lett (2009) 0.84
MetalionRNA: computational predictor of metal-binding sites in RNA structures. Bioinformatics (2011) 0.84
Exploring ribozyme conformational changes with X-ray crystallography. Methods (2009) 0.83
Impact of nuclear organization and dynamics on epigenetic regulation in the central nervous system: implications for neurological disease states. Ann N Y Acad Sci (2010) 0.82
Viral RNAs are unusually compact. PLoS One (2014) 0.82
RNA structural motifs that entail hydrogen bonds involving sugar-phosphate backbone atoms of RNA. New J Chem (2010) 0.82
Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins. Translation (Austin) (2015) 0.81
Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity. Nucleic Acids Res (2014) 0.81
FRETmatrix: a general methodology for the simulation and analysis of FRET in nucleic acids. Nucleic Acids Res (2012) 0.79
An in vitro-selected RNA receptor for the GAAC loop: modular receptor for non-GNRA-type tetraloop. Nucleic Acids Res (2013) 0.78
Conformational features of topologically classified RNA secondary structures. PLoS One (2012) 0.77
MultiSETTER: web server for multiple RNA structure comparison. BMC Bioinformatics (2015) 0.76
3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures. Nucleic Acids Res (2015) 0.76
Structure-specific nucleic acid recognition by L-motifs and their diverse roles in expression and regulation of the genome. Biochim Biophys Acta (2015) 0.75
Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme. Nucleic Acids Res (2014) 0.75
The GA-minor submotif as a case study of RNA modularity, prediction, and design. Wiley Interdiscip Rev RNA (2013) 0.75
CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking. PLoS One (2016) 0.75
Rsite2: an efficient computational method to predict the functional sites of noncoding RNAs. Sci Rep (2016) 0.75
Structural characterization of the internal transcribed spacer 2 (ITS2) of the ribosomal DNA (rDNA) cluster in Calyptratae (Diptera: Schizophora) and its implications for molecular phylogenetic analyses. J Mol Evol (2013) 0.75