Published in Mol Biol Evol on July 31, 2008
Regulation of expression of genes involved in quinate and shikimate utilization in Corynebacterium glutamicum. Appl Environ Microbiol (2009) 0.85
The conserved Lysine69 residue plays a catalytic role in Mycobacterium tuberculosis shikimate dehydrogenase. BMC Res Notes (2009) 0.75
Two shikimate dehydrogenases, VvSDH3 and VvSDH4, are involved in gallic acid biosynthesis in grapevine. J Exp Bot (2016) 0.75
Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease. PLoS Pathog (2013) 2.58
Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl Environ Microbiol (2004) 2.56
Next-generation mapping of Arabidopsis genes. Plant J (2011) 2.39
Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months. CMAJ (2013) 2.39
Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of kiwifruit outbreaks belong to the same genetic lineage. PLoS One (2012) 1.75
Structural proteomics: toward high-throughput structural biology as a tool in functional genomics. Acc Chem Res (2003) 1.62
Type III effector diversification via both pathoadaptation and horizontal transfer in response to a coevolutionary arms race. PLoS Genet (2006) 1.62
Mosaic evolution of the severe acute respiratory syndrome coronavirus. J Virol (2004) 1.61
Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III Hop effector proteins in the plant pathogen Pseudomonas syringae. Mol Plant Microbe Interact (2005) 1.59
Data mining crystallization databases: knowledge-based approaches to optimize protein crystal screens. Proteins (2003) 1.58
Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112. J Bacteriol (2004) 1.56
Terminal reassortment drives the quantum evolution of type III effectors in bacterial pathogens. PLoS Pathog (2006) 1.52
Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona. PLoS Genet (2013) 1.48
Phylogenetic characterization of virulence and resistance phenotypes of Pseudomonas syringae. Appl Environ Microbiol (2005) 1.44
Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum. J Biol Chem (2003) 1.41
Using a commercial DiversiLab semiautomated repetitive sequence-based PCR typing technique for identification of Escherichia coli clone ST131 producing CTX-M-15. J Clin Microbiol (2009) 1.40
Comparative genomics of host-specific virulence in Pseudomonas syringae. Genetics (2006) 1.38
PAMDB, a multilocus sequence typing and analysis database and website for plant-associated microbes. Phytopathology (2010) 1.35
Host-pathogen interplay and the evolution of bacterial effectors. Cell Microbiol (2007) 1.30
Diverse evolutionary mechanisms shape the type III effector virulence factor repertoire in the plant pathogen Pseudomonas syringae. Genetics (2004) 1.26
A bacterial acetyltransferase destroys plant microtubule networks and blocks secretion. PLoS Pathog (2012) 1.21
Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A. Mol Plant Microbe Interact (2006) 1.19
Evolution of plant pathogenesis in Pseudomonas syringae: a genomics perspective. Annu Rev Phytopathol (2011) 1.18
Structural insight on the mechanism of regulation of the MarR family of proteins: high-resolution crystal structure of a transcriptional repressor from Methanobacterium thermoautotrophicum. J Mol Biol (2008) 1.18
Insects as alternative hosts for phytopathogenic bacteria. FEMS Microbiol Rev (2011) 1.17
ePlant and the 3D data display initiative: integrative systems biology on the world wide web. PLoS One (2011) 1.16
Determinants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations. Curr Biol (2010) 1.15
Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood. Appl Environ Microbiol (2011) 1.13
The targeting of plant cellular systems by injected type III effector proteins. Semin Cell Dev Biol (2009) 1.13
Nucleotide sequence and evolution of the five-plasmid complement of the phytopathogen Pseudomonas syringae pv. maculicola ES4326. J Bacteriol (2004) 1.13
Evolution of prokaryotic and eukaryotic virulence effectors. Curr Opin Plant Biol (2008) 1.11
The HopZ family of Pseudomonas syringae type III effectors require myristoylation for virulence and avirulence functions in Arabidopsis thaliana. J Bacteriol (2008) 1.11
Gut microbiota diversity and atopic disease: does breast-feeding play a role? J Allergy Clin Immunol (2012) 1.10
Pseudomonas syringae strains naturally lacking the classical P. syringae hrp/hrc Locus are common leaf colonizers equipped with an atypical type III secretion system. Mol Plant Microbe Interact (2010) 1.08
Identification of innate immunity elicitors using molecular signatures of natural selection. Proc Natl Acad Sci U S A (2012) 1.08
Structure of Arabidopsis dehydroquinate dehydratase-shikimate dehydrogenase and implications for metabolic channeling in the shikimate pathway. Biochemistry (2006) 1.08
Allele-specific virulence attenuation of the Pseudomonas syringae HopZ1a type III effector via the Arabidopsis ZAR1 resistance protein. PLoS Genet (2010) 1.06
Deep trefoil knot implicated in RNA binding found in an archaebacterial protein. Proteins (2003) 1.05
Evolution of the type III secretion system and its effectors in plant-microbe interactions. New Phytol (2008) 1.04
The crystal structure of MT0146/CbiT suggests that the putative precorrin-8w decarboxylase is a methyltransferase. Structure (2002) 1.04
Crystal structure of a novel shikimate dehydrogenase from Haemophilus influenzae. J Biol Chem (2005) 1.03
Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut. BMC Microbiol (2012) 1.02
The YopJ superfamily in plant-associated bacteria. Mol Plant Pathol (2011) 1.01
Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions. PLoS One (2012) 1.00
The structural basis for methylmalonic aciduria. The crystal structure of archaeal ATP:cobalamin adenosyltransferase. J Biol Chem (2004) 0.99
The Arabidopsis ZED1 pseudokinase is required for ZAR1-mediated immunity induced by the Pseudomonas syringae type III effector HopZ1a. Proc Natl Acad Sci U S A (2013) 0.97
Allelic variants of the Pseudomonas syringae type III effector HopZ1 are differentially recognized by plant resistance systems. Mol Plant Microbe Interact (2009) 0.96
Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Pseudomonas syringae type III effector HopZ2. BMC Genomics (2012) 0.94
Characterization of the gut-associated microbiome in inflammatory pouch complications following ileal pouch-anal anastomosis. PLoS One (2013) 0.92
Seasonal community succession of the phyllosphere microbiome. Mol Plant Microbe Interact (2015) 0.92
Sequencing and annotation of the Ophiostoma ulmi genome. BMC Genomics (2013) 0.91
Convergent evolution of phytopathogenic pseudomonads onto hazelnut. Microbiology (2007) 0.91
Identification of a functionally essential amino acid for Arabidopsis cyclic nucleotide gated ion channels using the chimeric AtCNGC11/12 gene. Plant J (2008) 0.91
Disruption of the murine Glp2r impairs Paneth cell function and increases susceptibility to small bowel enteritis. Endocrinology (2012) 0.90
Evolutionary diversification of plant shikimate kinase gene duplicates. PLoS Genet (2008) 0.90
Draft Genome Sequence of the Antibiotic-Producing Cystic Fibrosis Isolate Pantoea agglomerans Tx10. Genome Announc (2013) 0.87
Tri6 is a global transcription regulator in the phytopathogen Fusarium graminearum. PLoS Pathog (2011) 0.86
Quantitative evaluation of the host-colonizing capabilities of the enteric bacterium Pantoea using plant and insect hosts. Microbiology (2014) 0.86
Host specificity determinants as a genetic continuum. Trends Microbiol (2011) 0.85
New and sensitive assay for determining Pseudomonas aeruginosa metallo-beta-lactamase resistance to imipenem. J Clin Microbiol (2008) 0.85
HopZ4 from Pseudomonas syringae, a member of the HopZ type III effector family from the YopJ superfamily, inhibits the proteasome in plants. Mol Plant Microbe Interact (2014) 0.85
Next-generation genomics of Pseudomonas syringae. Curr Opin Microbiol (2011) 0.85
The crystal structure of a novel SAM-dependent methyltransferase PH1915 from Pyrococcus horikoshii. Protein Sci (2005) 0.84
E622, a miniature, virulence-associated mobile element. J Bacteriol (2011) 0.84
Crystal structure of MTH169, a crucial component of phosphoribosylformylglycinamidine synthetase. Proteins (2002) 0.83
Crystal structure of prephenate dehydrogenase from Aquifex aeolicus. Insights into the catalytic mechanism. J Biol Chem (2006) 0.83
Pulmonary bacterial communities in surgically resected noncystic fibrosis bronchiectasis lungs are similar to those in cystic fibrosis. Pulm Med (2012) 0.82
Crystal structure of the hypothetical protein TA1238 from Thermoplasma acidophilum: a new type of helical super-bundle. J Struct Funct Genomics (2004) 0.81
The crystal structure of Aquifex aeolicus prephenate dehydrogenase reveals the mode of tyrosine inhibition. J Biol Chem (2009) 0.81
Use of low-coverage, large-insert, short-read data for rapid and accurate generation of enhanced-quality draft Pseudomonas genome sequences. PLoS One (2011) 0.81
Crystal structures of MTH1187 and its yeast ortholog YBL001c. Proteins (2003) 0.81
HopAS1 recognition significantly contributes to Arabidopsis nonhost resistance to Pseudomonas syringae pathogens. New Phytol (2011) 0.80
Crystal structure and biochemical analyses reveal that the Arabidopsis triphosphate tunnel metalloenzyme AtTTM3 is a tripolyphosphatase involved in root development. Plant J (2013) 0.80
Crystal structure of Methanobacterium thermoautotrophicum conserved protein MTH1020 reveals an NTN-hydrolase fold. Proteins (2002) 0.79
Biochemical characterization of prephenate dehydrogenase from the hyperthermophilic bacterium Aquifex aeolicus. Protein Sci (2006) 0.79
Draft Genome Sequence of the Antibiotic-Producing Epiphytic Isolate Pantoea ananatis BRT175. Genome Announc (2013) 0.78
Next-generation mapping of genetic mutations using bulk population sequencing. Methods Mol Biol (2014) 0.78
Phytopathogen type III effectors as probes of biological systems. Microb Biotechnol (2013) 0.78
The PCR amplification and characterization of entire Pseudomonas syringae hrp/hrc clusters. Mol Plant Pathol (2004) 0.78
Structural and biochemical investigation of two Arabidopsis shikimate kinases: the heat-inducible isoform is thermostable. Protein Sci (2011) 0.78
Changes in the gut microbiome of the sea lamprey during metamorphosis. Appl Environ Microbiol (2012) 0.78
Proteomics of effector-triggered immunity (ETI) in plants. Virulence (2014) 0.78
Insights into the function of RifI2: structural and biochemical investigation of a new shikimate dehydrogenase family protein. Biochim Biophys Acta (2012) 0.77
Forward chemical genetic screens in Arabidopsis identify genes that influence sensitivity to the phytotoxic compound sulfamethoxazole. BMC Plant Biol (2012) 0.76
Crystal structure of chorismate synthase from Aquifex aeolicus reveals a novel beta alpha beta sandwich topology. Proteins (2004) 0.75
Structural and mechanistic analysis of a novel class of shikimate dehydrogenases: evidence for a conserved catalytic mechanism in the shikimate dehydrogenase family. Biochemistry (2011) 0.75