Published in AMIA Annu Symp Proc on October 11, 2007
Auditing the semantic completeness of SNOMED CT using formal concept analysis. J Am Med Inform Assoc (2008) 2.19
A review of auditing methods applied to the content of controlled biomedical terminologies. J Biomed Inform (2009) 2.18
Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED. J Biomed Inform (2011) 1.45
Auditing complex concepts of SNOMED using a refined hierarchical abstraction network. J Biomed Inform (2011) 1.29
Abstraction networks for terminologies: Supporting management of "big knowledge". Artif Intell Med (2015) 1.22
Using the RxNorm web services API for quality assurance prposes. AMIA Annu Symp Proc (2008) 1.21
Using the abstraction network in complement to description logics for quality assurance in biomedical terminologies - a case study in SNOMED CT. Stud Health Technol Inform (2010) 1.19
Structural group-based auditing of missing hierarchical relationships in UMLS. J Biomed Inform (2008) 1.15
Auditing SNOMED relationships using a converse abstraction network. AMIA Annu Symp Proc (2009) 1.14
New abstraction networks and a new visualization tool in support of auditing the SNOMED CT content. AMIA Annu Symp Proc (2012) 1.08
Complexity measures to track the evolution of a SNOMED hierarchy. AMIA Annu Symp Proc (2008) 1.02
Auditing complex concepts in overlapping subsets of SNOMED. AMIA Annu Symp Proc (2008) 1.00
A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal. AMIA Annu Symp Proc (2013) 0.96
Scalability of abstraction-network-based quality assurance to large SNOMED hierarchies. AMIA Annu Symp Proc (2013) 0.95
Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. J Biomed Inform (2016) 0.86
A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies. J Biomed Inform (2016) 0.84
Structural measures to track the evolution of SNOMED CT hierarchies. J Biomed Inform (2015) 0.81
Sculpting the UMLS Refined Semantic Network. Online J Public Health Inform (2014) 0.79
Introducing the Big Knowledge to Use (BK2U) challenge. Ann N Y Acad Sci (2016) 0.75
Structural Patterns under X-Rays: Is SNOMED CT Growing Straight? PLoS One (2016) 0.75
Analyzing structural changes in SNOMED CT's Bacterial infectious diseases using a visual semantic delta. J Biomed Inform (2017) 0.75
From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies. Artif Intell Med (2017) 0.75
Ontology-based error detection in SNOMED-CT. Stud Health Technol Inform (2004) 4.31
Structural methodologies for auditing SNOMED. J Biomed Inform (2006) 3.46
Mistakes in medical ontologies: where do they come from and how can they be detected? Stud Health Technol Inform (2004) 3.19
Auditing as part of the terminology design life cycle. J Am Med Inform Assoc (2006) 2.73
AR-V7 and resistance to enzalutamide and abiraterone in prostate cancer. N Engl J Med (2014) 12.29
Automated encoding of clinical documents based on natural language processing. J Am Med Inform Assoc (2004) 11.48
Mechanism by which fatty acids inhibit insulin activation of insulin receptor substrate-1 (IRS-1)-associated phosphatidylinositol 3-kinase activity in muscle. J Biol Chem (2002) 9.76
A syndrome of altered cardiovascular, craniofacial, neurocognitive and skeletal development caused by mutations in TGFBR1 or TGFBR2. Nat Genet (2005) 9.62
Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer. Nat Med (2009) 6.61
Detecting adverse events using information technology. J Am Med Inform Assoc (2003) 6.25
Adult SVZ stem cells lie in a vascular niche: a quantitative analysis of niche cell-cell interactions. Cell Stem Cell (2008) 5.76
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell (2012) 5.16
The timing of cortical neurogenesis is encoded within lineages of individual progenitor cells. Nat Neurosci (2006) 4.49
A temporal constraint structure for extracting temporal information from clinical narrative. J Biomed Inform (2005) 4.42
Hepatitis C virus production by human hepatocytes dependent on assembly and secretion of very low-density lipoproteins. Proc Natl Acad Sci U S A (2007) 4.05
Berberine is a novel cholesterol-lowering drug working through a unique mechanism distinct from statins. Nat Med (2004) 3.92
Latent transforming growth factor beta-binding protein 1 interacts with fibrillin and is a microfibril-associated protein. J Biol Chem (2002) 3.92
Automated detection of adverse events using natural language processing of discharge summaries. J Am Med Inform Assoc (2005) 3.77
The evaluation of a temporal reasoning system in processing clinical discharge summaries. J Am Med Inform Assoc (2007) 3.71
Active computerized pharmacovigilance using natural language processing, statistics, and electronic health records: a feasibility study. J Am Med Inform Assoc (2009) 3.62
Structural methodologies for auditing SNOMED. J Biomed Inform (2006) 3.46
The properties of high-dimensional data spaces: implications for exploring gene and protein expression data. Nat Rev Cancer (2008) 3.43
H7N9 influenza viruses are transmissible in ferrets by respiratory droplet. Science (2013) 3.33
Mapping abbreviations to full forms in biomedical articles. J Am Med Inform Assoc (2002) 3.29
Temporal reasoning with medical data--a review with emphasis on medical natural language processing. J Biomed Inform (2007) 3.21
Plasma 25-hydroxyvitamin D concentration and metabolic syndrome among middle-aged and elderly Chinese individuals. Diabetes Care (2009) 3.20
Pillbox organizers are associated with improved adherence to HIV antiretroviral therapy and viral suppression: a marginal structural model analysis. Clin Infect Dis (2007) 3.16
Single-vector inducible lentiviral RNAi system for oncology target validation. Cell Cycle (2009) 3.14
Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. J Am Med Inform Assoc (2007) 3.09
Columbia University's Informatics for Diabetes Education and Telemedicine (IDEATel) Project: rationale and design. J Am Med Inform Assoc (2001) 3.06
Extracting structured medication event information from discharge summaries. AMIA Annu Symp Proc (2008) 3.06
Domain mapping studies reveal that the M domain of hsp90 serves as a molecular scaffold to regulate Akt-dependent phosphorylation of endothelial nitric oxide synthase and NO release. Circ Res (2002) 3.01
Myeloid-derived suppressor cells suppress antitumor immune responses through IDO expression and correlate with lymph node metastasis in patients with breast cancer. J Immunol (2013) 2.96
System architecture for temporal information extraction, representation and reasoning in clinical narrative reports. AMIA Annu Symp Proc (2005) 2.93
The 'obligate diploid' Candida albicans forms mating-competent haploids. Nature (2013) 2.93
Integrin alphaVbeta6-mediated activation of latent TGF-beta requires the latent TGF-beta binding protein-1. J Cell Biol (2004) 2.90
Caveats for the use of operational electronic health record data in comparative effectiveness research. Med Care (2013) 2.89
Plasma microRNA-122 as a biomarker for viral-, alcohol-, and chemical-related hepatic diseases. Clin Chem (2010) 2.86
Adult SVZ lineage cells home to and leave the vascular niche via differential responses to SDF1/CXCR4 signaling. Cell Stem Cell (2010) 2.85
Melamine related bilateral renal calculi in 50 children: single center experience in clinical diagnosis and treatment. J Urol (2010) 2.83
Antiestrogen resistance in breast cancer and the role of estrogen receptor signaling. Oncogene (2003) 2.82
Mining a clinical data warehouse to discover disease-finding associations using co-occurrence statistics. AMIA Annu Symp Proc (2005) 2.75
Auditing as part of the terminology design life cycle. J Am Med Inform Assoc (2006) 2.73
Hgc1, a novel hypha-specific G1 cyclin-related protein regulates Candida albicans hyphal morphogenesis. EMBO J (2004) 2.72
Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice. ISME J (2009) 2.69
Bacterial peptidoglycan triggers Candida albicans hyphal growth by directly activating the adenylyl cyclase Cyr1p. Cell Host Microbe (2008) 2.68
A Smac mimetic rescue screen reveals roles for inhibitor of apoptosis proteins in tumor necrosis factor-alpha signaling. Cancer Res (2007) 2.52
The sublanguage of cross-coverage. Proc AMIA Symp (2002) 2.50
The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011. BMC Bioinformatics (2012) 2.45
Mitotic rate and younger age are predictors of sentinel lymph node positivity: lessons learned from the generation of a probabilistic model. Ann Surg Oncol (2004) 2.42
Calibrating the end-Permian mass extinction. Science (2011) 2.41
Diagnosing and responding to violations in the positivity assumption. Stat Methods Med Res (2010) 2.29
Global transcriptome analysis of the heat shock response of Shewanella oneidensis. J Bacteriol (2004) 2.28
Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas. Cancer Res (2009) 2.25
The sedimentation sign for differential diagnosis of lumbar spinal stenosis. Spine (Phila Pa 1976) (2013) 2.24
Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration. Brain (2006) 2.22
Detecting adverse events for patient safety research: a review of current methodologies. J Biomed Inform (2003) 2.20
Human mesenchymal stem cells stimulated by TNF-alpha, LPS, or hypoxia produce growth factors by an NF kappa B- but not JNK-dependent mechanism. Am J Physiol Cell Physiol (2008) 2.18
Galectin-1 deactivates classically activated microglia and protects from inflammation-induced neurodegeneration. Immunity (2012) 2.18
A microfluidic processor for gene expression profiling of single human embryonic stem cells. Lab Chip (2007) 2.17
Why don't they listen? Adherence to recommendations of infectious disease consultations. Clin Infect Dis (2004) 2.13
Gene symbol disambiguation using knowledge-based profiles. Bioinformatics (2007) 2.13
Inter-patient distance metrics using SNOMED CT defining relationships. J Biomed Inform (2006) 2.12
The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate Jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana. Plant Cell (2011) 2.11
Azithromycin for acute bronchitis: a randomised, double-blind, controlled trial. Lancet (2002) 2.09
Identification of molecular pathway aberrations in uterine serous carcinoma by genome-wide analyses. J Natl Cancer Inst (2012) 2.09
Cyclin-dependent kinases control septin phosphorylation in Candida albicans hyphal development. Dev Cell (2007) 2.07
Supplementation of fat grafts with adipose-derived regenerative cells improves long-term graft retention. Ann Plast Surg (2010) 2.06
Cellular characterization of adenylate kinase and its isoform: two-photon excitation fluorescence imaging and fluorescence correlation spectroscopy. Biophys J (2002) 1.99
Counterfactual links to the proportion of treatment effect explained by a surrogate marker. Biometrics (2005) 1.98
Development, implementation, and a cognitive evaluation of a definitional question answering system for physicians. J Biomed Inform (2007) 1.98
Obesity hypoventilation syndrome: prevalence and predictors in patients with obstructive sleep apnea. Sleep Breath (2007) 1.98
Transient improvement in cognitive function and synaptic plasticity in rats following cancer chemotherapy. Clin Cancer Res (2006) 1.97
Using health information exchange to improve public health. Am J Public Health (2011) 1.97
TGF-beta induces proangiogenic and antiangiogenic factors via parallel but distinct Smad pathways. Kidney Int (2004) 1.95
Overexpression of uncoupling protein 3 in skeletal muscle protects against fat-induced insulin resistance. J Clin Invest (2007) 1.91
Accelerating the use of electronic health records in physician practices. N Engl J Med (2010) 1.89
Endocannabinoids facilitate the induction of LTP in the hippocampus. Nat Neurosci (2002) 1.84
GSK3-TIP60-ULK1 signaling pathway links growth factor deprivation to autophagy. Science (2012) 1.84
Modifiable risk factors and major cardiac events among adult survivors of childhood cancer. J Clin Oncol (2013) 1.83
MicroRNA-125a-5p partly regulates the inflammatory response, lipid uptake, and ORP9 expression in oxLDL-stimulated monocyte/macrophages. Cardiovasc Res (2009) 1.83
Neonatal antidepressant exposure has lasting effects on behavior and serotonin circuitry. Neuropsychopharmacology (2006) 1.83
Down-regulated microRNA-152 induces aberrant DNA methylation in hepatitis B virus-related hepatocellular carcinoma by targeting DNA methyltransferase 1. Hepatology (2010) 1.81
Assessing the effectiveness of antiretroviral adherence interventions. Using marginal structural models to replicate the findings of randomized controlled trials. J Acquir Immune Defic Syndr (2006) 1.81
Columbia University's Informatics for Diabetes Education and Telemedicine (IDEATel) project: technical implementation. J Am Med Inform Assoc (2001) 1.80
Etiology and clinical characteristics of membranous nephropathy in Chinese patients. Am J Kidney Dis (2008) 1.80
Auditing concept categorizations in the UMLS. Artif Intell Med (2004) 1.80
The role of domain knowledge in automating medical text report classification. J Am Med Inform Assoc (2003) 1.76
Secondhand smoke exposure, pulmonary function, and cardiovascular mortality. Ann Epidemiol (2007) 1.76
Endothelial-specific expression of caveolin-1 impairs microvascular permeability and angiogenesis. Proc Natl Acad Sci U S A (2004) 1.75
The orphan nuclear receptor Nur77 regulates LKB1 localization and activates AMPK. Nat Chem Biol (2012) 1.75
Using EHRs to integrate research with patient care: promises and challenges. J Am Med Inform Assoc (2012) 1.74
Molecular assembly of an aptamer-drug conjugate for targeted drug delivery to tumor cells. Chembiochem (2009) 1.73
EGFR tyrosine kinase inhibitors activate autophagy as a cytoprotective response in human lung cancer cells. PLoS One (2011) 1.73
Age-related retinopathy in NRF2-deficient mice. PLoS One (2011) 1.71
DNA copy numbers profiles in affinity-purified ovarian clear cell carcinoma. Clin Cancer Res (2010) 1.71
Atrial natriuretic peptide promotes cardiomyocyte survival by cGMP-dependent nuclear accumulation of zyxin and Akt. J Clin Invest (2005) 1.70