PubRank

Jonas S Almeida

Author PubWeight™ 66.42‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 From XML to RDF: how semantic web technologies will change the design of 'omic' standards. Nat Biotechnol 2005 2.41
2 A Semantic Web management model for integrative biomedical informatics. PLoS One 2008 2.02
3 Urine biomarkers predict the cause of glomerular disease. J Am Soc Nephrol 2007 1.98
4 Prediction of urinary protein markers in lupus nephritis. Kidney Int 2005 1.77
5 Predicting extubation outcome in preterm newborns: a comparison of neural networks with clinical expertise and statistical modeling. Pediatr Res 2004 1.63
6 Autoinducer 2 production by Streptococcus gordonii DL1 and the biofilm phenotype of a luxS mutant are influenced by nutritional conditions. J Bacteriol 2003 1.48
7 Effect of the seven-valent conjugate pneumococcal vaccine on carriage and drug resistance of Streptococcus pneumoniae in healthy children attending day-care centers in Lisbon. Pediatr Infect Dis J 2005 1.43
8 High rates of transmission of and colonization by Streptococcus pneumoniae and Haemophilus influenzae within a day care center revealed in a longitudinal study. J Clin Microbiol 2007 1.40
9 A self-updating road map of The Cancer Genome Atlas. Bioinformatics 2013 1.38
10 Analysis of a marine phototrophic biofilm by confocal laser scanning microscopy using the new image quantification software PHLIP. BMC Ecol 2006 1.37
11 Identification of prognostic gene signatures of glioblastoma: a study based on TCGA data analysis. Neuro Oncol 2013 1.32
12 Multidestructive pathways triggered in photoreceptor cell death of the rd mouse as determined through gene expression profiling. J Biol Chem 2004 1.31
13 Automated smoother for the numerical decoupling of dynamics models. BMC Bioinformatics 2007 1.27
14 Exposing the cancer genome atlas as a SPARQL endpoint. J Biomed Inform 2010 1.25
15 An innovative microarray strategy identities informative molecular markers for the detection of micrometastatic breast cancer. Clin Cancer Res 2005 1.21
16 Data integration gets 'Sloppy'. Nat Biotechnol 2006 1.17
17 Exploratory analysis of the copy number alterations in glioblastoma multiforme. PLoS One 2008 1.17
18 PrepMS: TOF MS data graphical preprocessing tool. Bioinformatics 2006 1.13
19 Parameter optimization in S-system models. BMC Syst Biol 2008 1.12
20 Identification of neutral biochemical network models from time series data. BMC Syst Biol 2009 1.10
21 A multivariate prediction model for microarray cross-hybridization. BMC Bioinformatics 2006 1.07
22 Rényi continuous entropy of DNA sequences. J Theor Biol 2004 1.06
23 An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results. BMC Bioinformatics 2004 1.06
24 Roles for sphingolipid biosynthesis in mediation of specific programs of the heat stress response determined through gene expression profiling. J Biol Chem 2003 1.03
25 Insights into the immune transcriptome of the shrimp Litopenaeus vannamei: tissue-specific expression profiles and transcriptomic responses to immune challenge. Physiol Genomics 2006 1.01
26 Comparative evaluation of word composition distances for the recognition of SCOP relationships. Bioinformatics 2004 1.00
27 Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information. BMC Bioinformatics 2004 1.00
28 Marine genomics: a clearing-house for genomic and transcriptomic data of marine organisms. BMC Genomics 2005 0.97
29 An introspective comparison of random forest-based classifiers for the analysis of cluster-correlated data by way of RF++. PLoS One 2009 0.96
30 Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement. BMC Bioinformatics 2007 0.96
31 Local Renyi entropic profiles of DNA sequences. BMC Bioinformatics 2007 0.96
32 Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis. Algorithms Mol Biol 2012 0.94
33 A cDNA microarray for Crassostrea virginica and C. gigas. Mar Biotechnol (NY) 2007 0.94
34 A nonparametric approach to detect nonlinear correlation in gene expression. J Comput Graph Stat 2010 0.92
35 AGML Central: web based gel proteomic infrastructure. Bioinformatics 2005 0.92
36 The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative. Proteomics 2010 0.91
37 Accurate discrimination of Barrett's esophagus and esophageal adenocarcinoma using a quantitative three-tiered algorithm and multimarker real-time reverse transcription-PCR. Clin Cancer Res 2005 0.90
38 Parameter selection for and implementation of a web-based decision-support tool to predict extubation outcome in premature infants. BMC Med Inform Decis Mak 2006 0.90
39 A dolphin peripheral blood leukocyte cDNA microarray for studies of immune function and stress reactions. Dev Comp Immunol 2006 0.90
40 QMachine: commodity supercomputing in web browsers. BMC Bioinformatics 2014 0.89
41 Efficient Boolean implementation of universal sequence maps (bUSM). BMC Bioinformatics 2002 0.89
42 Prediction of pelvic organ prolapse using an artificial neural network. Am J Obstet Gynecol 2008 0.89
43 RPPAML/RIMS: a metadata format and an information management system for reverse phase protein arrays. BMC Bioinformatics 2008 0.88
44 Premature atherosclerosis is associated with hypovitaminosis D and angiotensin-converting enzyme inhibitor non-use in lupus patients. Am J Med Sci 2012 0.86
45 An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis. BMC Bioinformatics 2008 0.85
46 Multivariate phase space reconstruction by nearest neighbor embedding with different time delays. Phys Rev E Stat Nonlin Soft Matter Phys 2005 0.82
47 Comparison of variability associated with sample preparation in two-dimensional gel electrophoresis of cardiac tissue. J Biomol Tech 2006 0.82
48 AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services. BMC Med Inform Decis Mak 2010 0.82
49 Adapting experimental ontologies for molecular epidemiology. AMIA Annu Symp Proc 2007 0.82
50 Sources of variability among replicate samples separated by two-dimensional gel electrophoresis. J Biomol Tech 2010 0.80
51 Entropic Profiler - detection of conservation in genomes using information theory. BMC Res Notes 2009 0.80
52 Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data. BMC Bioinformatics 2014 0.80
53 Web-based prediction of extubation outcome in premature infants on mechanical ventilation using an artificial neural network. AMIA Annu Symp Proc 2003 0.80
54 Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions. Proteome Sci 2012 0.80
55 Computational Pathology: A Path Ahead. Arch Pathol Lab Med 2015 0.79
56 mGrid: a load-balanced distributed computing environment for the remote execution of the user-defined Matlab code. BMC Bioinformatics 2006 0.79
57 Examining the effect of maternal obesity on outcome of labor induction in patients with preeclampsia. Hypertens Pregnancy 2010 0.78
58 Identification of diagnostic urinary biomarkers for acute kidney injury. J Investig Med 2010 0.78
59 DASMiner: discovering and integrating data from DAS sources. BMC Syst Biol 2009 0.78
60 S3QL: a distributed domain specific language for controlled semantic integration of life sciences data. BMC Bioinformatics 2011 0.77
61 Development of novel software to generate anthropometric norms at perinatal autopsy. Pediatr Dev Pathol 2015 0.77
62 An improved method for two-dimensional fluorescence monitoring of complex bioreactors. J Biotechnol 2007 0.76
63 Modelling interactions of acid-base balance and respiratory status in the toxicity of metal mixtures in the American oyster Crassostrea virginica. Comp Biochem Physiol A Mol Integr Physiol 2009 0.75
64 The emergence of the ERC. Science 2005 0.75
65 Non-mechanistic modelling of complex biofilm reactors and the role of process operation history. J Biotechnol 2005 0.75
66 Nearest neighbor embedding with different time delays. Phys Rev E Stat Nonlin Soft Matter Phys 2005 0.75
67 Data driven semantic integration of translational lung cancer research at MDAnderson Cancer Center. AMIA Annu Symp Proc 2008 0.75
68 Diagnostic and prognostic biomarkers in acute renal failure. Contrib Nephrol 2008 0.75