Published in Methods Mol Biol on January 01, 2009
Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits. BMC Evol Biol (2011) 1.69
Inference of gain and loss events from phyletic patterns using stochastic mapping and maximum parsimony--a simulation study. Genome Biol Evol (2011) 0.98
Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biol Evol (2011) 0.81
Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. BMC Microbiol (2007) 3.25
The natural history of nitrogen fixation. Mol Biol Evol (2003) 3.07
Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae. J Bacteriol (2004) 2.44
NCIR: a database of non-canonical interactions in known RNA structures. Nucleic Acids Res (2002) 1.83
Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence. J Bacteriol (2006) 1.75
Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032. PLoS One (2007) 1.71
The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny. J Bacteriol (2006) 1.55
Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs. RNA (2002) 1.50
Life and the evolution of Earth's atmosphere. Science (2002) 1.46
The application of cluster analysis in the intercomparison of loop structures in RNA. RNA (2005) 1.32
The singular quest for a universal tree of life. Microbiol Mol Biol Rev (2013) 1.24
Secondary structure and domain architecture of the 23S and 5S rRNAs. Nucleic Acids Res (2013) 1.17
Identification of essential domains for Escherichia coli tRNA(leu) aminoacylation and amino acid editing using minimalist RNA molecules. Nucleic Acids Res (2002) 1.16
The Cuatro Ciénegas Basin in Coahuila, Mexico: an astrobiological Precambrian Park. Astrobiology (2012) 1.14
Visualization of ribosomal RNA operon copy number distribution. BMC Microbiol (2009) 1.10
Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium. PLoS One (2007) 1.06
Bacillus coahuilensis sp. nov., a moderately halophilic species from a desiccation lagoon in the Cuatro Ciénegas Valley in Coahuila, Mexico. Int J Syst Evol Microbiol (2008) 1.02
Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment. BMC Microbiol (2007) 1.01
Cyanobacterial signature genes. Photosynth Res (2003) 1.01
Phylogenetic analysis of polyomavirus simian virus 40 from monkeys and humans reveals genetic variation. J Virol (2004) 0.97
Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores. PLoS One (2013) 0.96
Human-blind probes and primers for dengue virus identification. FEBS J (2006) 0.93
Ribosome origins: the relative age of 23S rRNA Domains. Orig Life Evol Biosph (2006) 0.91
RNA ligation and the origin of tRNA. Orig Life Evol Biosph (2003) 0.90
The presence of nitrate dramatically changed the predominant microbial community in perchlorate degrading cultures under saline conditions. BMC Microbiol (2014) 0.89
Nucleic acid separations utilizing immobilized metal affinity chromatography. Biotechnol Prog (2003) 0.88
Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green. J Mol Recognit (2009) 0.87
DNAzyme-mediated recovery of small recombinant RNAs from a 5S rRNA-derived chimera expressed in Escherichia coli. BMC Biotechnol (2010) 0.85
A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences. Mol Biol Evol (2006) 0.84
Bacterial genotyping by 16S rRNA mass cataloging. BMC Bioinformatics (2006) 0.84
Microbial identification by mass cataloging. BMC Bioinformatics (2006) 0.83
UNAC tetraloops: to what extent do they mimic GNRA tetraloops? Biopolymers (2012) 0.82
Many nonuniversal archaeal ribosomal proteins are found in conserved gene clusters. Archaea (2009) 0.81
Separation of genomic DNA from plasmid DNA by selective renaturation with immobilized metal affinity capture. Biotechnol Prog (2005) 0.81
Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset. Bioinformatics (2002) 0.81
Hybridization-responsive fluorescent DNA probes containing the adenine analog 2-aminopurine. Anal Biochem (2003) 0.80
PCR detection of nearly any dengue virus strain using a highly sensitive primer 'cocktail'. FEBS J (2011) 0.80
Neutral additives enhance the metal-chelate affinity adsorption of nucleic acids: role of water activity. J Chromatogr A (2006) 0.79
Water-elutability of nucleic acids from metal-chelate affinity adsorbents: enhancement by control of surface charge density. J Mol Recognit (2006) 0.79
Defining 5S rRNA structure space: point mutation data can be used to predict the phenotype of multichange variants. Mol Biol Evol (2011) 0.78
Toward universal flavivirus identification by mass cataloging. J Mol Diagn (2008) 0.78
Metal chelate affinity precipitation of RNA and purification of plasmid DNA. Biotechnol Lett (2003) 0.78
Rapid in vivo exploration of a 5S rRNA neutral network. J Microbiol Methods (2008) 0.78
Reduction of DNA contamination in RNA samples for reverse transcription-polymerase chain reaction using selective precipitation by compaction agents. Anal Biochem (2008) 0.78
Common 5S rRNA variants are likely to be accepted in many sequence contexts. J Mol Evol (2003) 0.78
Microbial identification by immunohybridization assay of artificial RNA labels. J Microbiol Methods (2002) 0.78
Small RNA sequences are readily stabilized by inclusion in a carrier rRNA. Biotechnol Prog (2003) 0.78
Stress-driven in vivo selection of a functional mini-gene from a randomized DNA library expressing combinatorial peptides in Escherichia coli. Mol Biol Evol (2007) 0.77
In Vivo Production of Small Recombinant RNAs Embedded in a 5S rRNA-Derived Protective Scaffold. Methods Mol Biol (2015) 0.77
Rare target enrichment for ultrasensitive PCR detection using cot-rehybridization and duplex-specific nuclease. Anal Biochem (2011) 0.77
STITCH: algorithm to splice, trim, identify, track, and capture the uniqueness of 16S rRNAs sequence pairs using public or in-house database. Microb Ecol (2010) 0.76
Life detection using glucose and tetrasaccharide enantiomer pairs. Astrobiology (2009) 0.76
Effect of an artificial RNA marker on gene expression in Escherichia coli. Appl Environ Microbiol (2005) 0.76
NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit. Nucleic Acids Res (2005) 0.76
An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores. Extremophiles (2013) 0.76
Travel, sex, and food: what's speciation got to do with it? Astrobiology (2012) 0.76
16S rRNA beacons for bacterial monitoring during human space missions. Aviat Space Environ Med (2007) 0.76
Draft Genome Sequence of Deinococcus phoenicis, a Novel Strain Isolated during the Phoenix Lander Spacecraft Assembly. Genome Announc (2014) 0.76
Removal of PCR error products and unincorporated primers by metal-chelate affinity chromatography. PLoS One (2011) 0.75
Nanometer scale pores similar in size to the entrance of the ribosomal exit cavity are a common feature of large RNAs. RNA (2013) 0.75
RECOVIR: an application package to automatically identify some single stranded RNA viruses using capsid protein residues that uniquely distinguish among these viruses. BMC Bioinformatics (2007) 0.75
Detection and typing of viruses using broadly sensitive cocktail-PCR and mass spectrometric cataloging: demonstration with dengue virus. J Mol Diagn (2012) 0.75
Resurrection of an ancestral 5S rRNA. BMC Evol Biol (2011) 0.75
Compaction agent protection of nucleic acids during mechanical lysis. Biotechnol Prog (2006) 0.75
Structural properties of DNA oligomers containing (GACX)(n) and (GAXC)(n) tandem repeats. Biopolymers (2011) 0.75
Enhancement of anion-exchange chromatography of DNA using compaction agents. J Chromatogr A (2003) 0.75
Biohazard potential of putative Martian organisms during missions to Mars. Aviat Space Environ Med (2007) 0.75
Compaction agent clarification of microbial lysates. Protein Expr Purif (2003) 0.75
Exhaustive computational identification of pathogen sequences far-distant from background genomes: Identification and experimental verification of human-blind dengue PCR primers. J Biotechnol (2007) 0.75