Published in J Chem Phys on April 21, 2009
Toward Identification of the reaction coordinate directly from the transition state ensemble using the kernel PCA method. J Phys Chem B (2011) 1.74
Protein dynamics and enzymatic chemical barrier passage. J Phys Chem B (2011) 0.98
The enzymatic reaction catalyzed by lactate dehydrogenase exhibits one dominant reaction path. Chem Phys (2014) 0.83
Protein dynamics and the enzymatic reaction coordinate. Top Curr Chem (2013) 0.83
Recent developments in methods for identifying reaction coordinates. Mol Simul (2014) 0.82
α-helix to β-hairpin transition of human amylin monomer. J Chem Phys (2013) 0.80
Reducing the cost of evaluating the committor by a fitting procedure. J Chem Phys (2015) 0.80
Evolution alters the enzymatic reaction coordinate of dihydrofolate reductase. J Phys Chem B (2014) 0.78
Reaction mechanism and reaction coordinates from the viewpoint of energy flow. J Chem Phys (2016) 0.77
A benchmark for reaction coordinates in the transition path ensemble. J Chem Phys (2016) 0.75
Transition path sampling: throwing ropes over rough mountain passes, in the dark. Annu Rev Phys Chem (2001) 7.13
Reaction coordinates of biomolecular isomerization. Proc Natl Acad Sci U S A (2000) 3.71
Reaction coordinates and rates from transition paths. Proc Natl Acad Sci U S A (2005) 3.12
Automatic method for identifying reaction coordinates in complex systems. J Phys Chem B (2005) 3.03
String method in collective variables: minimum free energy paths and isocommittor surfaces. J Chem Phys (2006) 2.53
Reaction coordinate of an enzymatic reaction revealed by transition path sampling. Proc Natl Acad Sci U S A (2007) 2.43
Finite temperature string method for the study of rare events. J Phys Chem B (2005) 2.09
Atomic detail of chemical transformation at the transition state of an enzymatic reaction. Proc Natl Acad Sci U S A (2008) 2.01
Obtaining reaction coordinates by likelihood maximization. J Chem Phys (2006) 1.59
Extensions to the likelihood maximization approach for finding reaction coordinates. J Chem Phys (2007) 1.57
A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT. Proc Natl Acad Sci U S A (2008) 1.21
Exploring reaction pathways with transition path and umbrella sampling: application to methyl maltoside. J Chem Phys (2006) 0.83
Stochastic broadening of the separatrix of a tokamak divertor. Phys Rev Lett (1992) 0.82
A phase II randomized double-masked trial of pegaptanib, an anti-vascular endothelial growth factor aptamer, for diabetic macular edema. Ophthalmology (2005) 3.20
Outcomes of vitrectomy with inferior retinectomy in patients with recurrent rhegmatogenous retinal detachments and proliferative vitreoretinopathy. Ophthalmology (2006) 2.51
Reaction coordinate of an enzymatic reaction revealed by transition path sampling. Proc Natl Acad Sci U S A (2007) 2.43
How enzyme dynamics helps catalyze a reaction in atomic detail: a transition path sampling study. J Am Chem Soc (2005) 2.16
Atomic detail of chemical transformation at the transition state of an enzymatic reaction. Proc Natl Acad Sci U S A (2008) 2.01
Surgery for subfoveal choroidal neovascularization in age-related macular degeneration: ophthalmic findings: SST report no. 11. Ophthalmology (2004) 1.96
A placebo-controlled trial of microplasmin intravitreous injection to facilitate posterior vitreous detachment before vitrectomy. Ophthalmology (2010) 1.84
Computational and theoretical methods to explore the relation between enzyme dynamics and catalysis. Chem Rev (2006) 1.74
Toward Identification of the reaction coordinate directly from the transition state ensemble using the kernel PCA method. J Phys Chem B (2011) 1.74
Identification of a protein-promoting vibration in the reaction catalyzed by horse liver alcohol dehydrogenase. J Am Chem Soc (2002) 1.73
Barrier passage and protein dynamics in enzymatically catalyzed reactions. Eur J Biochem (2002) 1.53
Maximum tolerated dose of a humanized anti-vascular endothelial growth factor antibody fragment for treating neovascular age-related macular degeneration. Ophthalmology (2005) 1.47
Remote mutations and active site dynamics correlate with catalytic properties of purine nucleoside phosphorylase. Biophys J (2008) 1.46
Bilateral choroidal folds and optic neuropathy: a variant of the crowded disk syndrome? Ophthalmology (2003) 1.41
Ultra wide-field angiographic characteristics of branch retinal and hemicentral retinal vein occlusion. Ophthalmology (2010) 1.39
Peripheral vessel leakage (PVL): a new angiographic finding in diabetic retinopathy identified with ultra wide-field fluorescein angiography. Semin Ophthalmol (2010) 1.38
Changes in the chemical and dynamic properties of cardiac troponin T cause discrete cardiomyopathies in transgenic mice. Proc Natl Acad Sci U S A (2005) 1.32
Promoting vibrations in human purine nucleoside phosphorylase. A molecular dynamics and hybrid quantum mechanical/molecular mechanical study. J Am Chem Soc (2004) 1.32
20-, 23-, and 25-gauge vitreous cutters: performance and characteristics evaluation. Retina (2008) 1.32
Ultra-wide-field and autofluorescence imaging of choroidal dystrophies. Ophthalmic Surg Lasers Imaging (2010) 1.26
Feasibility study of intraocular robotic surgery with the da Vinci surgical system. Retina (2008) 1.25
Barrier Crossing in Dihydrofolate Reductasedoes not involve a rate-promoting vibration. Mol Phys (2012) 1.19
Ligand binding and protein dynamics in lactate dehydrogenase. Biophys J (2007) 1.19
25-Gauge pars plicata vitrectomy for stage 4 and 5 retinopathy of prematurity. Retina (2006) 1.18
Ultrawide angle fluorescein angiographic imaging: a comparison to conventional digital acquisition systems. Ophthalmic Surg Lasers Imaging (2008) 1.15
Insight into catalytically relevant correlated motions in human purine nucleoside phosphorylase. J Phys Chem A (2006) 1.14
Slow conformational motions that favor sub-picosecond motions important for catalysis. J Phys Chem B (2010) 1.13
Rate-promoting vibrations and coupled hydrogen-electron transfer reactions in the condensed phase: a model for enzymatic catalysis. J Chem Phys (2004) 1.11
A model of calcium activation of the cardiac thin filament. Biochemistry (2011) 1.07
Ocriplasmin for vitreoretinal diseases. J Biomed Biotechnol (2012) 1.06
Changes in protein architecture and subpicosecond protein dynamics impact the reaction catalyzed by lactate dehydrogenase. J Phys Chem A (2013) 1.04
Peripheral retinopathy and maculopathy in high-dose tamoxifen therapy. Am J Ophthalmol (2007) 1.02
Transition Path Sampling Study of the Reaction Catalyzed by Purine Nucleoside Phosphorylase. Z Phys Chem (N F) (2008) 1.01
Comparison studies of the human heart and Bacillus stearothermophilus lactate dehydrogreanse by transition path sampling. J Phys Chem A (2009) 1.00
Pediatric rhegmatogenous retinal detachment: clinical features and surgical outcomes. Retina (2008) 1.00
The promoting vibration in human heart lactate dehydrogenase is a preferred vibrational channel. J Phys Chem B (2011) 0.98
Effect of cutting phases on flow rate in 20-, 23-, and 25-gauge vitreous cutters. Retina (2009) 0.98
Protein dynamics and enzymatic chemical barrier passage. J Phys Chem B (2011) 0.98
Molecular effects of familial hypertrophic cardiomyopathy-related mutations in the TNT1 domain of cTnT. J Mol Biol (2012) 0.97
Endophthalmitis after pars plana vitrectomy a 20- and 25-gauge comparison. Ophthalmology (2009) 0.97
Tryptophan-free human PNP reveals catalytic site interactions. Biochemistry (2008) 0.96
Retinal vascular patterns in adults with cyanotic congenital heart disease. Semin Ophthalmol (2009) 0.95
Limited long-term efficacy of intravitreous anti-VEGF pharmacotherapy in sarcoidosis complicated by peripapillary choroidal neovascular membrane. Acta Ophthalmol (2010) 0.94
Postoperative posterior segment complications in eyes treated with the Boston type I keratoprosthesis. Retina (2013) 0.94
Transition path sampling study of classical rate-promoting vibrations. J Chem Phys (2004) 0.92
Ultrawide angle angiography for the detection and management of diabetic retinopathy. Int Ophthalmol Clin (2009) 0.91
A pilot study of normative data for macular thickness and volume measurements using cirrus high-definition optical coherence tomography. Retina (2011) 0.91
Ischemic index and neovascularization in central retinal vein occlusion. Retina (2011) 0.91
Ultra Wide Field Fluorescein Angiography Guided Targeted Retinal Photocoagulation (TRP). Semin Ophthalmol (2009) 0.90
Pediatric retinal conditions imaged by ultra wide field fluorescein angiography. Ophthalmic Surg Lasers Imaging Retina (2013) 0.90
Severe steroid-induced glaucoma following intravitreal injection of triamcinolone acetonide. Am J Ophthalmol (2006) 0.89
Age-related macular degeneration: current treatments. Clin Ophthalmol (2009) 0.88
Experimental model of intravitreal injection techniques. Retina (2010) 0.87
Effect of cut rates on fluidic behavior of chopped vitreous. Retina (2013) 0.86
Embryonic stem cells as a treatment for macular degeneration. Expert Opin Biol Ther (2013) 0.85
Age-related macular degeneration: current and novel therapies. Maturitas (2010) 0.84
Removal of posterior segment retained lens material using the OZil phacoemulsification handpiece versus Fragmatome during pars plana vitrectomy. Retina (2012) 0.84
Conformational freedom in tight binding enzymatic transition-state analogues. J Phys Chem B (2013) 0.84
Approximate inclusion of quantum effects in transition path sampling. J Chem Phys (2009) 0.83
Enzyme homologues have distinct reaction paths through their transition states. J Phys Chem B (2015) 0.82
Protein promoting vibrations in enzyme catalysis--a conserved evolutionary motif. J Proteome Res (2003) 0.82
New mixed quantumsemiclassical propagation method. J Chem Phys (2007) 0.82
Endophthalmitis in microincision vitrectomy: outcomes of gas-filled eyes. Retina (2011) 0.81
Reliability of Ischemic Index Grading in Common Retinal Vascular Diseases. Ophthalmic Surg Lasers Imaging Retina (2015) 0.81
Tunneling dynamics with a mixed quantum-classical method: quantum corrected propagator combined with frozen Gaussian wave packets. J Chem Phys (2008) 0.81
On the Origin of the Chemical Barrier and Tunneling in Enzymes. J Phys Org Chem (2010) 0.80
Inadvertent skip areas in treatment of zone 1 retinopathy of prematurity. Retina (2003) 0.80
Age-related macular degeneration: experimental and emerging treatments. Clin Ophthalmol (2009) 0.80
Submacular combination treatment for management of acute, massive submacular hemorrhage in age-related macular degeneration. Ophthalmic Surg Lasers Imaging (2009) 0.79
Association of systemic risk factors with the progression of laser-treated retinopathy of prematurity to retinal detachment. Retina (2008) 0.79
Short-duration focal pattern grid photocoagulation for macular edema secondary to branch retinal vein occlusion. Semin Ophthalmol (2012) 0.79
Response to Comment on "Towards identification of the reaction coordinate directly from the transition state ensemble using the kernel PCA method" by D. Antoniou and S. Schwartz, J. Phys. Chem. B. 115, 2465-2469 (2011). J Phys Chem B (2011) 0.78
The fellow eye of patients with rhegmatogenous retinal detachment. Ophthalmology (2004) 0.78
Ultra wide field fluorescein angiography can detect macular pathology in central retinal vein occlusion. Ophthalmic Surg Lasers Imaging (2012) 0.78
Evolution alters the enzymatic reaction coordinate of dihydrofolate reductase. J Phys Chem B (2014) 0.78
Ultra widefield imaging of peripheral exudative hemorrhagic chorioretinopathy. Semin Ophthalmol (2009) 0.77
Morphologic features and evolution of inner retinal dimples on optical coherence tomography after internal limiting membrane peeling. Retina (2014) 0.76
CORRELATION OF MULTIMODAL IMAGING IN SICKLE CELL RETINOPATHY. Retina (2016) 0.76
Retinal vascular patterns after operative repair of aortic isthmic coarctation. Am J Cardiol (2009) 0.76
Gene Therapy for Age-Related Macular Degeneration. Asia Pac J Ophthalmol (Phila) (2016) 0.76
Peripheral fluorescein angiographic findings in fellow eyes of patients with branch retinal vein occlusion. Int J Inflam (2013) 0.75
Finite temperature application of the corrected propagator method to reactive dynamics in a condensed-phase environment. J Chem Phys (2011) 0.75
Suprachoroidal hemorrhage as an intraoperative complication of 25-gauge pars plana vitrectomy. Semin Ophthalmol (2007) 0.75
RESOLUTION OF A GIANT PIGMENT EPITHELIAL DETACHMENT WITH HALF-DOSE AFLIBERCEPT. Retin Cases Brief Rep (2015) 0.75
Clinically Divergent Mutation Effects on the Structure and Function of the Human Cardiac Tropomyosin Overlap. Biochemistry (2017) 0.75
Risk for eye splash injury during administration of intraocular injections: a study of retina specialists and fellows. Retina (2007) 0.75
Diagnostic and therapeutic challenges. Retina (2011) 0.75
Dramatic resolution of extreme ocular ischemia in a case of Takayasu's arteritis. Ophthalmic Surg Lasers Imaging Retina (2013) 0.75
Familial exudative vitreoretinopathy and macular hole exhibited in same individual. Semin Ophthalmol (2007) 0.75
The slower the better: on the instability of gas jets in a model of pneumatic retinopexy. Invest Ophthalmol Vis Sci (2007) 0.75
Diagnostic and therapeutic challenges. Retina (2010) 0.75
CORRELATION OF MULTIMODAL IMAGING IN SICKLE CELL RETINOPATHY. Retina (2016) 0.75
Modeling vibrational resonance in linear hydrocarbon chain with a mixed quantum-classical method. J Chem Phys (2009) 0.75
Diagnostic & therapeutic challenges. Retina (2005) 0.75
EARLY DETECTION OF RETINAL HEMANGIOBLASTOMAS IN VON HIPPEL-LINDAU DISEASE USING ULTRA-WIDEFIELD FLUORESCEIN ANGIOGRAPHY. Retina (2017) 0.75
ULTRA-WIDEFIELD FUNDUS IMAGING: A Review of Clinical Applications and Future Trends. Retina (2016) 0.75
ULTRAWIDEFIELD AUTOFLUORESENCE IN ABCA4 STARGARDT DISEASE. Retina (2017) 0.75
Electric Fields and Fast Protein Dynamics in Enzymes. J Phys Chem Lett (2017) 0.75
A current method to collect an undiluted vitrectomy sample. Retina (2010) 0.75
Diabetic tractional retinal detachment repair by vitreoretinal fellows in a county health system. Retina (2015) 0.75