Published in Phys Rev E Stat Nonlin Soft Matter Phys on March 16, 2009
Nanopore force spectroscopy of aptamer-ligand complexes. Biophys J (2013) 0.88
Rationally manipulating aptamer binding affinities in a stem-loop molecular beacon. Bioconjug Chem (2014) 0.78
Complementary oligonucleotides regulate induced fit ligand binding in duplexed aptamers. Chem Sci (2016) 0.75
Structure-switching signaling aptamers. J Am Chem Soc (2003) 2.22
Dinucleotide junction cleavage versatility of 8-17 deoxyribozyme. Chem Biol (2004) 2.06
Splice site strength-dependent activity and genetic buffering by poly-G runs. Nat Struct Mol Biol (2009) 1.99
Biologically inspired synthetic enzymes made from DNA. Chem Biol (2009) 1.92
In vitro selection of structure-switching signaling aptamers. Angew Chem Int Ed Engl (2005) 1.83
Nucleic acid aptamers and enzymes as sensors. Curr Opin Chem Biol (2006) 1.60
Design of gold nanoparticle-based colorimetric biosensing assays. Chembiochem (2008) 1.56
Rolling circle amplification: applications in nanotechnology and biodetection with functional nucleic acids. Angew Chem Int Ed Engl (2008) 1.35
Aptamers with fluorescence-signaling properties. Methods (2005) 1.32
Paper-based bioassays using gold nanoparticle colorimetric probes. Anal Chem (2008) 1.24
An efficient RNA-cleaving DNA enzyme that synchronizes catalysis with fluorescence signaling. J Am Chem Soc (2003) 1.23
Discovering ordered phases of block copolymers: new results from a generic Fourier-space approach. Phys Rev Lett (2008) 1.15
A synthetic luxCDABE gene cluster optimized for expression in high-GC bacteria. Nucleic Acids Res (2007) 1.13
Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes. Chem Biol (2002) 1.11
Assemblage of signaling DNA enzymes with intriguing metal-ion specificities and pH dependences. J Am Chem Soc (2003) 1.10
Confinement-induced novel morphologies of block copolymers. Phys Rev Lett (2006) 1.09
Structure-switching signaling aptamers: transducing molecular recognition into fluorescence signaling. Chemistry (2004) 1.08
Fluorogenic DNAzyme probes as bacterial indicators. Angew Chem Int Ed Engl (2011) 1.04
Making AppDNA using T4 DNA ligase. Bioorg Chem (2002) 1.04
Tracing sequence diversity change of RNA-cleaving deoxyribozymes under increasing selection pressure during in vitro selection. Biochemistry (2004) 1.03
Giant surfactants provide a versatile platform for sub-10-nm nanostructure engineering. Proc Natl Acad Sci U S A (2013) 1.02
Diverse evolutionary trajectories characterize a community of RNA-cleaving deoxyribozymes: a case study into the population dynamics of in vitro selection. J Mol Evol (2005) 1.02
Affinity analysis of a protein-aptamer complex using nonequilibrium capillary electrophoresis of equilibrium mixtures. Anal Chem (2003) 1.01
Ligating DNA with DNA. J Am Chem Soc (2004) 1.01
A versatile endoribonuclease mimic made of DNA: characteristics and applications of the 8-17 RNA-cleaving DNAzyme. Chembiochem (2010) 1.01
A FACS-based approach to engineering artificial riboswitches. Chembiochem (2008) 1.00
Simple and rapid colorimetric biosensors based on DNA aptamer and noncrosslinking gold nanoparticle aggregation. Chembiochem (2007) 1.00
DNA aptamer folding on gold nanoparticles: from colloid chemistry to biosensors. J Am Chem Soc (2008) 0.98
Sequence-function relationships provide new insight into the cleavage site selectivity of the 8-17 RNA-cleaving deoxyribozyme. Nucleic Acids Res (2008) 0.96
Quenching of fluorophore-labeled DNA oligonucleotides by divalent metal ions: implications for selection, design, and applications of signaling aptamers and signaling deoxyribozymes. J Am Chem Soc (2006) 0.96
The Observation of Highly Ordered Domains in Membranes with Cholesterol. PLoS One (2013) 0.95
DNA polymerization on gold nanoparticles through rolling circle amplification: towards novel scaffolds for three-dimensional periodic nanoassemblies. Angew Chem Int Ed Engl (2006) 0.93
Efficient signaling platforms built from a small catalytic DNA and doubly labeled fluorogenic substrates. Nucleic Acids Res (2006) 0.93
Detection of DNA using bioactive paper strips. Chem Commun (Camb) (2009) 0.92
In vitro selection of small RNA-cleaving deoxyribozymes that cleave pyrimidine-pyrimidine junctions. Nucleic Acids Res (2008) 0.92
Using a riboswitch sensor to examine coenzyme B(12) metabolism and transport in E. coli. Chem Biol (2010) 0.92
Simple fluorescent sensors engineered with catalytic DNA 'MgZ' based on a non-classic allosteric design. PLoS One (2007) 0.92
Ordering of a lamella-forming fluid near an interface. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.90
Multiplexed paper test strip for quantitative bacterial detection. Anal Bioanal Chem (2012) 0.90
Catalysis and rational engineering of trans-acting pH6DZ1, an RNA-cleaving and fluorescence-signaling deoxyribozyme with a four-way junction structure. Chembiochem (2006) 0.90
Translating bacterial detection by DNAzymes into a litmus test. Angew Chem Int Ed Engl (2014) 0.89
Enzymatic cleavage of nucleic acids on gold nanoparticles: a generic platform for facile colorimetric biosensors. Small (2008) 0.89
Revitalization of six abandoned catalytic DNA species reveals a common three-way junction framework and diverse catalytic cores. J Mol Biol (2006) 0.89
Identifying mRNA sequence elements for target recognition by human Argonaute proteins. Genome Res (2014) 0.88
Evolution of high-branching deoxyribozymes from a catalytic DNA with a three-way junction. Chem Biol (2006) 0.88
Characterizing the secondary structure and identifying functionally essential nucleotides of pH6DZ1, a fluorescence-signaling and RNA-cleaving deoxyribozyme. Biochemistry (2005) 0.88
Colorimetric sensing by using allosteric-DNAzyme-coupled rolling circle amplification and a peptide nucleic acid-organic dye probe. Angew Chem Int Ed Engl (2009) 0.87
SnapShot: High-throughput sequencing applications. Cell (2011) 0.87
Characterization of a catalytically efficient acidic RNA-cleaving deoxyribozyme. Nucleic Acids Res (2006) 0.87
Secondary-structure characterization of two proficient kinase deoxyribozymes. Biochemistry (2005) 0.87
Entrapment of fluorescence signaling DNA enzymes in sol-gel-derived materials for metal ion sensing. Anal Chem (2007) 0.86
A genotype-to-phenotype map of in vitro selected RNA-cleaving DNAzymes: implications for accessing the target phenotype. Nucleic Acids Res (2009) 0.86
A deoxyribozyme with a novel guanine quartet-helix pseudoknot structure. J Mol Biol (2007) 0.86
Characterization of an RNA-cleaving deoxyribozyme with optimal activity at pH 5. Biochemistry (2009) 0.86
Soft confinement-induced morphologies of diblock copolymers. Langmuir (2011) 0.85
Detection of bacteria using fluorogenic DNAzymes. J Vis Exp (2012) 0.85
DNAzyme-mediated catalysis with only guanosine and cytidine nucleotides. Nucleic Acids Res (2008) 0.85
Multiple occurrences of an efficient self-phosphorylating deoxyribozyme motif. Biochemistry (2007) 0.84
Investigation of DNA as a catalyst for Henry reaction in water. Chem Commun (Camb) (2008) 0.84
Turning a kinase deoxyribozyme into a sensor. J Am Chem Soc (2013) 0.84
Tripartite molecular beacons. Nucleic Acids Res (2002) 0.84
Real-space self-consistent mean-field theory study of ABC star triblock copolymers. J Chem Phys (2010) 0.84
The structural diversity of deoxyribozymes. Molecules (2010) 0.84
A general approach to the construction of structure-switching reporters from RNA aptamers. Angew Chem Int Ed Engl (2010) 0.84
Simple and rapid colorimetric enzyme sensing assays using non-crosslinking gold nanoparticle aggregation. Chem Commun (Camb) (2007) 0.84
Adsorption and covalent coupling of ATP-binding DNA aptamers onto cellulose. Langmuir (2007) 0.83
Microgel-based inks for paper-supported biosensing applications. Biomacromolecules (2008) 0.83
Small-molecule screening made simple for a difficult target with a signaling nucleic acid aptamer that reports on deaminase activity. Angew Chem Int Ed Engl (2006) 0.83
Probing the function of nucleotides in the catalytic cores of the 8-17 and 10-23 DNAzymes by abasic nucleotide and C3 spacer substitutions. Biochemistry (2010) 0.83
Tau protein binds single-stranded DNA sequence specifically--the proof obtained in vitro with non-equilibrium capillary electrophoresis of equilibrium mixtures. FEBS Lett (2005) 0.82
A DNA-protein nanoengine for "on-demand" release and precise delivery of molecules. Angew Chem Int Ed Engl (2005) 0.82
Characterization of long RNA-cleaving deoxyribozymes with short catalytic cores: the effect of excess sequence elements on the outcome of in vitro selection. Nucleic Acids Res (2006) 0.82
Transition path from two apposed membranes to a stalk obtained by a combination of particle simulations and string method. Phys Rev Lett (2012) 0.82
A complex RNA-cleaving DNAzyme that can efficiently cleave a pyrimidine-pyrimidine junction. J Mol Biol (2010) 0.81
A graphene-based biosensing platform based on the release of DNA probes and rolling circle amplification. ACS Nano (2014) 0.81
Phase behavior of binary blends of diblock copolymer/homopolymer confined in spherical nanopores. Langmuir (2011) 0.81
Lighting Up RNA-Cleaving DNAzymes for Biosensing. J Nucleic Acids (2012) 0.80
Influence of cleavage site on global folding of an RNA-cleaving DNAzyme. Chembiochem (2010) 0.80
Nucleation of ordered phases in block copolymers. Phys Rev Lett (2010) 0.80
Phase diagram of diblock copolymers confined in thin films. J Phys Chem B (2013) 0.80
Phase behavior of rod-coil diblock copolymer and homopolymer blends from self-consistent field theory. J Phys Chem B (2011) 0.80
Pullulan encapsulation of labile biomolecules to give stable bioassay tablets. Angew Chem Int Ed Engl (2014) 0.79
Solid-phase enzyme activity assay utilizing an entrapped fluorescence-signaling DNA aptamer. Angew Chem Int Ed Engl (2006) 0.79
Effect of cholesterol on the lateral nanoscale dynamics of fluid membranes. Eur Biophys J (2012) 0.79
Highly specific recognition of breast tumors by an RNA-cleaving fluorogenic DNAzyme probe. Anal Chem (2014) 0.79
Advancements in using reporter DNAzymes for identifying pathogenic bacteria at speed and with convenience. Future Microbiol (2011) 0.79
Aptamers and small molecules play tug of war. Chem Biol (2007) 0.79
Surface immobilization of structure-switching DNA aptamers on macroporous sol-gel-derived films for solid-phase biosensing applications. Anal Chem (2011) 0.79
Amyloid-β25-35 peptides aggregate into cross-β sheets in unsaturated anionic lipid membranes at high peptide concentrations. Soft Matter (2016) 0.78
Phosphoester-transfer mechanism of an RNA-cleaving acidic deoxyribozyme revealed by radioactivity tracking and enzymatic digestion. Chem Commun (Camb) (2006) 0.78
Macromolecular metallurgy of binary mesocrystals via designed multiblock terpolymers. J Am Chem Soc (2014) 0.78
Self-assembly of grafted Y-shaped ABC triblock copolymers in solutions. J Chem Phys (2008) 0.78
Identification of a toxic peptide through bidirectional expression of small RNAs. Chembiochem (2009) 0.78
Helical vesicles, segmented semivesicles, and noncircular bilayer sheets from solution-state self-assembly of ABC miktoarm star terpolymers. J Am Chem Soc (2009) 0.78