Published in Biotechnol Adv on May 26, 2009
Long-term cold acclimation extends survival time at 0°C and modifies the metabolomic profiles of the larvae of the fruit fly Drosophila melanogaster. PLoS One (2011) 1.09
Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades. BMC Genomics (2009) 0.98
Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer. BMC Genomics (2010) 0.93
Anhydrobiosis-associated nuclear DNA damage and repair in the sleeping chironomid: linkage with radioresistance. PLoS One (2010) 0.92
Expression of heat shock protein-coding genes associated with anhydrobiosis in an African chironomid Polypedilum vanderplanki. Cell Stress Chaperones (2010) 0.86
Protocol for optimal quality and quantity pollen DNA isolation from honey samples. J Biomol Tech (2014) 0.79
Comparative proteome analysis of Milnesium tardigradum in early embryonic state versus adults in active and anhydrobiotic state. PLoS One (2012) 0.79
Experimentally Induced Repeated Anhydrobiosis in the Eutardigrade Richtersius coronifer. PLoS One (2016) 0.75
Dissolved Gases and Ice Fracturing During the Freezing of a Multicellular Organism: Lessons from Tardigrades. Biores Open Access (2015) 0.75
Methylglyoxal modification of Nav1.8 facilitates nociceptive neuron firing and causes hyperalgesia in diabetic neuropathy. Nat Med (2012) 3.31
Identifying functional modules in protein-protein interaction networks: an integrated exact approach. Bioinformatics (2008) 3.00
5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene (2008) 2.51
4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics (2006) 2.24
Metabolic interdependence of obligate intracellular bacteria and their insect hosts. Microbiol Mol Biol Rev (2004) 2.19
Carbon metabolism of intracellular bacterial pathogens and possible links to virulence. Nat Rev Microbiol (2010) 2.04
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures. RNA (2005) 1.94
BioNet: an R-Package for the functional analysis of biological networks. Bioinformatics (2010) 1.93
The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses. Nucleic Acids Res (2006) 1.92
Characterization of soluble and exosomal forms of the EGFR released from pancreatic cancer cells. Life Sci (2011) 1.84
Distinguishing species. RNA (2007) 1.74
Platelet protein interactions: map, signaling components, and phosphorylation groundstate. Arterioscler Thromb Vasc Biol (2008) 1.71
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J (2010) 1.66
L1Base: from functional annotation to prediction of active LINE-1 elements. Nucleic Acids Res (2005) 1.57
Stoichiometry of the CD95 death-inducing signaling complex: experimental and modeling evidence for a death effector domain chain model. Mol Cell (2012) 1.57
Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. BMC Res Notes (2008) 1.54
Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta). BMC Evol Biol (2004) 1.51
Metabolites: a helping hand for pathway evolution? Trends Biochem Sci (2003) 1.50
Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. J Bacteriol (2006) 1.48
Riboswitch finder--a tool for identification of riboswitch RNAs. Nucleic Acids Res (2004) 1.47
The cell-cell adhesion molecule EpCAM interacts directly with the tight junction protein claudin-7. Exp Cell Res (2005) 1.47
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees. Biol Direct (2010) 1.44
Two-pronged binding with bromodomain-containing protein 4 liberates positive transcription elongation factor b from inactive ribonucleoprotein complexes. J Biol Chem (2011) 1.43
The proteome of rat olfactory sensory cilia. Proteomics (2009) 1.43
The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'. BMC Genomics (2008) 1.42
The ITS2 Database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Res (2007) 1.41
Acetylation of RNA polymerase II regulates growth-factor-induced gene transcription in mammalian cells. Mol Cell (2013) 1.40
CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. In Silico Biol (2005) 1.39
An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach. Plant Cell (2006) 1.37
XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics (2006) 1.33
Identification of potential markers for the detection of pancreatic cancer through comparative serum protein expression profiling. Pancreas (2007) 1.32
Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics (2007) 1.32
Interactions of methylene blue with human disulfide reductases and their orthologues from Plasmodium falciparum. Antimicrob Agents Chemother (2007) 1.28
Human SGT interacts with Bag-6/Bat-3/Scythe and cells with reduced levels of either protein display persistence of few misaligned chromosomes and mitotic arrest. Exp Cell Res (2006) 1.28
Genome-wide mapping of foamy virus vector integrations into a human cell line. J Gen Virol (2006) 1.28
Toward computer-based cleavage site prediction of cysteine endopeptidases. Biol Chem (2003) 1.27
Characterization of a hepatitis B and hepatitis delta virus receptor binding site. Hepatology (2006) 1.26
ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments. Bioinformatics (2008) 1.25
Iron regulation and the cell cycle: identification of an iron-responsive element in the 3'-untranslated region of human cell division cycle 14A mRNA by a refined microarray-based screening strategy. J Biol Chem (2006) 1.25
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinformatics (2005) 1.24
Identification of the junctional plaque protein plakophilin 3 in cytoplasmic particles containing RNA-binding proteins and the recruitment of plakophilins 1 and 3 to stress granules. Mol Biol Cell (2006) 1.23
NO66, a highly conserved dual location protein in the nucleolus and in a special type of synchronously replicating chromatin. Mol Biol Cell (2004) 1.21
13C isotopologue perturbation studies of Listeria monocytogenes carbon metabolism and its modulation by the virulence regulator PrfA. Proc Natl Acad Sci U S A (2006) 1.21
The highly attenuated oncolytic recombinant vaccinia virus GLV-1h68: comparative genomic features and the contribution of F14.5L inactivation. Mol Genet Genomics (2009) 1.20
mTOR target NDRG1 confers MGMT-dependent resistance to alkylating chemotherapy. Proc Natl Acad Sci U S A (2013) 1.20
Large-scale protein expression for proteome research. Proteomics (2005) 1.18
Three novel acetylation sites in the Foxp3 transcription factor regulate the suppressive activity of regulatory T cells. J Immunol (2012) 1.18
Proteomic analysis of a membrane preparation from rat olfactory sensory cilia. Chem Senses (2007) 1.17
Cardiac ankyrin repeat protein, a negative regulator of cardiac gene expression, is augmented in human heart failure. Biochem Biophys Res Commun (2002) 1.17
Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data. Int J Syst Evol Microbiol (2004) 1.16
Wall teichoic acid structure governs horizontal gene transfer between major bacterial pathogens. Nat Commun (2013) 1.15
ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. Bioinformatics (2005) 1.13
Shared components of protein complexes--versatile building blocks or biochemical artefacts? Bioessays (2004) 1.13
A truncated lamin A in the Lmna -/- mouse line: implications for the understanding of laminopathies. Nucleus (2012) 1.13
Proteome of Hydra nematocyst. J Biol Chem (2012) 1.11
CD44 variant isoforms associate with tetraspanins and EpCAM. Exp Cell Res (2004) 1.10
Analysis of SAGE data in human platelets: features of the transcriptome in an anucleate cell. Thromb Haemost (2006) 1.10
Use of functional highly purified human platelets for the identification of new proteins of the IPP signaling pathway. Thromb Res (2007) 1.07
Symplekin, a constitutive protein of karyo- and cytoplasmic particles involved in mRNA biogenesis in Xenopus laevis oocytes. Mol Biol Cell (2002) 1.06
RIP death domain structural interactions implicated in TNF-mediated proliferation and survival. Proteins (2006) 1.06
Costimulatory protein 4IgB7H3 drives the malignant phenotype of glioblastoma by mediating immune escape and invasiveness. Clin Cancer Res (2011) 1.03
Anhydrobiosis in tardigrades--the last decade. J Insect Physiol (2011) 1.03
Perforin-like protein PPLP2 permeabilizes the red blood cell membrane during egress of Plasmodium falciparum gametocytes. Cell Microbiol (2014) 1.02
Integrated systems view on networking by hormones in Arabidopsis immunity reveals multiple crosstalk for cytokinin. Plant Cell (2012) 1.01
Autoantibodies against the exocrine pancreas in autoimmune pancreatitis: gene and protein expression profiling and immunoassays identify pancreatic enzymes as a major target of the inflammatory process. Am J Gastroenterol (2010) 1.01
Probing lysine acetylation in proteins: strategies, limitations, and pitfalls of in vitro acetyltransferase assays. Mol Cell Proteomics (2005) 1.00
ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales). BMC Evol Biol (2008) 1.00
A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation. Mol Biosyst (2011) 0.99
Decoding Tat: the biology of HIV Tat posttranslational modifications. Microbes Infect (2005) 0.99
Synergistic combination of valproic acid and oncolytic parvovirus H-1PV as a potential therapy against cervical and pancreatic carcinomas. EMBO Mol Med (2013) 0.98
Thioredoxin reductase from the malaria mosquito Anopheles gambiae. Eur J Biochem (2003) 0.98
Liver-specific loss of lipolysis-stimulated lipoprotein receptor triggers systemic hyperlipidemia in mice. Diabetes (2009) 0.98
Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades. BMC Genomics (2009) 0.98
A simple viability analysis for unicellular cyanobacteria using a new autofluorescence assay, automated microscopy, and ImageJ. BMC Biotechnol (2011) 0.98
Quantitative proteomics identify novel miR-155 target proteins. PLoS One (2011) 0.96
ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae). J Mol Evol (2005) 0.96
The ITS2 Database. J Vis Exp (2012) 0.96
The role of auxin-cytokinin antagonism in plant-pathogen interactions. PLoS Pathog (2012) 0.95
Furin-mediated cleavage of the feline foamy virus Env leader protein. J Virol (2004) 0.95
Comparison of protein expression profiles between monolayer and spheroid cell culture of HT-29 cells revealed fragmentation of CK18 in three-dimensional cell culture. Electrophoresis (2002) 0.95
Rapid T cell-based identification of human tumor tissue antigens by automated two-dimensional protein fractionation. J Clin Invest (2010) 0.95
Toward a Systemic Understanding of Listeria monocytogenes Metabolism during Infection. Front Microbiol (2012) 0.94
Identification of the cellular prohibitin 1/prohibitin 2 heterodimer as an interaction partner of the C-terminal cytoplasmic domain of the HIV-1 glycoprotein. J Virol (2009) 0.94
Exonization of active mouse L1s: a driver of transcriptome evolution? BMC Genomics (2007) 0.94
Study of therapy resistance in cancer cells with functional proteome analysis. Clin Chem Lab Med (2002) 0.94
Stimulated expression of mRNAs in activated T cells depends on a functional CRM1 nuclear export pathway. J Mol Biol (2006) 0.94
Proteomic analysis of tardigrades: towards a better understanding of molecular mechanisms by anhydrobiotic organisms. PLoS One (2010) 0.94
Lysosomal, cytoskeletal, and metabolic alterations in cardiomyopathy of cathepsin L knockout mice. FASEB J (2006) 0.94
Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer. BMC Genomics (2010) 0.93
Ly6 family member C4.4A binds laminins 1 and 5, associates with galectin-3 and supports cell migration. Int J Cancer (2005) 0.93