Published in PLoS One on June 01, 2009
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol (2000) 57.88
Broad phylogenomic sampling improves resolution of the animal tree of life. Nature (2008) 11.84
M-Coffee: combining multiple sequence alignment methods with T-Coffee. Nucleic Acids Res (2006) 4.53
Classification and nomenclature of all human homeobox genes. BMC Biol (2007) 2.61
Mind the gaps: evidence of bias in estimates of multiple sequence alignments. Mol Biol Evol (2007) 1.78
Wnt and TGF-beta expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning. PLoS One (2007) 1.54
Relationship between the genomic organization and the overlapping embryonic expression patterns of the zebrafish dlx genes. Genomics (1997) 1.45
Hox genes in evolution: protein surfaces and paralog groups. Trends Genet (1997) 1.31
Lamprey Dlx genes and early vertebrate evolution. Proc Natl Acad Sci U S A (2001) 1.23
The role of gene duplication in the evolution and function of the vertebrate Dlx/distal-less bigene clusters. J Struct Funct Genomics (2003) 1.12
Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters. BMC Evol Biol (2008) 1.05
An S-RNase-based gametophytic self-incompatibility system evolved only once in eudicots. J Mol Evol (2008) 1.01
The Dlx gene complement of the leopard shark, Triakis semifasciata, resembles that of mammals: implications for genomic and morphological evolution of jawed vertebrates. Genetics (2004) 0.99
Analysis of vertebrate genomes suggests a new model for clade B serpin evolution. BMC Genomics (2005) 0.97
A comparison of MSA tools. Bioinformation (2008) 0.97
Non-overlapping expression patterns of the clustered Dll-A/B genes in the ascidian Ciona intestinalis. J Exp Zool B Mol Dev Evol (2007) 0.93
A low diversity of ANTP class homeobox genes in Placozoa. Evol Dev (2006) 0.91
Protein evolution of ANTP and PRD homeobox genes. BMC Evol Biol (2008) 0.82
Turnover of binding sites for transcription factors involved in early Drosophila development. Gene (2003) 1.67
Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population. New Phytol (2006) 1.03
An S-RNase-based gametophytic self-incompatibility system evolved only once in eudicots. J Mol Evol (2008) 1.01
Phylogenetic patterns of geographical and ecological diversification in the subgenus Drosophila. PLoS One (2012) 0.99
A study of 82 extended HLA haplotypes in HFE-C282Y homozygous hemochromatosis subjects: relationship to the genetic control of CD8+ T-lymphocyte numbers and severity of iron overload. BMC Med Genet (2006) 0.93
Medicago truncatula contains a second gene encoding a plastid located glutamine synthetase exclusively expressed in developing seeds. BMC Plant Biol (2010) 0.93
Inferences on the evolutionary history of the Drosophila americana polymorphic X/4 fusion from patterns of polymorphism at the X-linked paralytic and elav genes. Genetics (2003) 0.91
Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data. Mol Phylogenet Evol (2011) 0.90
A new 500 kb haplotype associated with high CD8+ T-lymphocyte numbers predicts a less severe expression of hereditary hemochromatosis. BMC Med Genet (2008) 0.89
Different positively selected sites at the gametophytic self-incompatibility pistil S-RNase gene in the Solanaceae and Rosaceae (Prunus, Pyrus, and Malus). J Mol Evol (2007) 0.88
Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation. Genome Biol Evol (2013) 0.87
Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses. Mol Ecol (2008) 0.87
On the location of the gene(s) harbouring the advantageous variant that maintains the X/4 fusion of Drosophila americana. Genet Res (2006) 0.86
RNase-based gametophytic self-incompatibility evolution: Questioning the hypothesis of multiple independent recruitments of the S-pollen gene. J Mol Evol (2009) 0.85
Phylogeny of the teashirt-related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish. Dev Dyn (2010) 0.84
Drosophila genes that affect meiosis duration are among the meiosis related genes that are more often found duplicated. PLoS One (2011) 0.83
ADOPS--Automatic Detection Of Positively Selected Sites. J Integr Bioinform (2012) 0.83
An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group. Gene (2008) 0.82
Protein evolution of ANTP and PRD homeobox genes. BMC Evol Biol (2008) 0.82
The number, age, sharing and relatedness of S-locus specificities in Prunus. Genet Res (Camb) (2008) 0.82
The evolutionary history of the transposable element Penelope in the Drosophila virilis group of species. J Mol Evol (2006) 0.82
A comparative study of the short term cold resistance response in distantly related Drosophila species: the role of regucalcin and frost. PLoS One (2011) 0.82
Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model. J Exp Bot (2013) 0.80
Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.). J Exp Bot (2008) 0.80
Comparative polytene chromosome maps of D. montana and D. virilis. Chromosoma (2006) 0.79
Evolutionary patterns at the RNase based gametophytic self - incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus). BMC Evol Biol (2010) 0.79
The Drosophila melanogaster methuselah gene: a novel gene with ancient functions. PLoS One (2013) 0.79
Recombination at Prunus S-locus region SLFL1 gene. Genetics (2008) 0.78
The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions. Fly (Austin) (2012) 0.77
Two divergent species of the virilis group, Drosophila littoralis and Drosophila virilis, share a replacement polymorphism at the fused locus. Mol Biol Evol (2002) 0.77
Nucleotide and repeat length variation at the nonA gene of the Drosophila virilis group species and its effects on male courtship song. Genetica (2002) 0.77
Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila. BMC Genomics (2003) 0.76
The Prunus self-incompatibility locus (S locus) is seldom rearranged. J Hered (2008) 0.76
Evidence for introgression in differentiated North-American and Finnish Drosophila montana populations. Genetica (2005) 0.75
Improving the performance of Transposable Elements detection tools. J Integr Bioinform (2013) 0.75