Rank |
Title |
Journal |
Year |
PubWeight™‹?› |
1
|
Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry.
|
Mol Cell Proteomics
|
2002
|
3.57
|
2
|
Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry.
|
Anal Chem
|
2006
|
3.22
|
3
|
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.
|
Proc Natl Acad Sci U S A
|
2002
|
3.15
|
4
|
Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.
|
Mol Cell Proteomics
|
2005
|
2.50
|
5
|
Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells.
|
Proteomics
|
2011
|
2.44
|
6
|
Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses.
|
Anal Chem
|
2007
|
2.38
|
7
|
Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.
|
J Proteome Res
|
2005
|
2.35
|
8
|
Integrative analysis of the mitochondrial proteome in yeast.
|
PLoS Biol
|
2004
|
2.31
|
9
|
High dynamic range characterization of the trauma patient plasma proteome.
|
Mol Cell Proteomics
|
2006
|
2.25
|
10
|
Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry.
|
Mol Cell Proteomics
|
2006
|
2.11
|
11
|
Development and evaluation of a micro- and nanoscale proteomic sample preparation method.
|
J Proteome Res
|
2005
|
2.06
|
12
|
Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.
|
Anal Chem
|
2004
|
2.00
|
13
|
Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.
|
Nat Methods
|
2011
|
1.95
|
14
|
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
|
Proteomics
|
2005
|
1.94
|
15
|
Protein composition of the vaccinia virus mature virion.
|
Virology
|
2006
|
1.93
|
16
|
Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment.
|
J Proteome Res
|
2006
|
1.93
|
17
|
Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics.
|
Anal Chem
|
2005
|
1.87
|
18
|
An automated high performance capillary liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometer for high-throughput proteomics.
|
J Am Soc Mass Spectrom
|
2004
|
1.68
|
19
|
Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information.
|
Anal Chem
|
2006
|
1.59
|
20
|
Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum.
|
Proc Natl Acad Sci U S A
|
2012
|
1.52
|
21
|
Dengue virus infection perturbs lipid homeostasis in infected mosquito cells.
|
PLoS Pathog
|
2012
|
1.45
|
22
|
High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis.
|
Anal Chem
|
2003
|
1.44
|
23
|
Characterization of individual mouse cerebrospinal fluid proteomes.
|
Proteomics
|
2014
|
1.44
|
24
|
Profiling signaling polarity in chemotactic cells.
|
Proc Natl Acad Sci U S A
|
2007
|
1.40
|
25
|
An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.
|
J Proteome Res
|
2010
|
1.37
|
26
|
Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach.
|
Mol Cell Proteomics
|
2006
|
1.36
|
27
|
Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome.
|
Proteomics
|
2005
|
1.33
|
28
|
Preparation of 20-microm-i.d. silica-based monolithic columns and their performance for proteomics analyses.
|
Anal Chem
|
2005
|
1.31
|
29
|
Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags.
|
Anal Chem
|
2008
|
1.26
|
30
|
Multidimensional proteome analysis of human mammary epithelial cells.
|
J Proteome Res
|
2004
|
1.24
|
31
|
Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample.
|
J Proteome Res
|
2009
|
1.24
|
32
|
Identification of cross-linked peptides after click-based enrichment using sequential collision-induced dissociation and electron transfer dissociation tandem mass spectrometry.
|
Anal Chem
|
2009
|
1.20
|
33
|
Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
|
J Proteome Res
|
2011
|
1.19
|
34
|
Characterization of the human blood plasma proteome.
|
Proteomics
|
2005
|
1.18
|
35
|
Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics.
|
J Proteome Res
|
2006
|
1.16
|
36
|
Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset.
|
J Proteome Res
|
2007
|
1.16
|
37
|
A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples.
|
J Proteome Res
|
2007
|
1.16
|
38
|
Enrichment of integral membrane proteins for proteomic analysis using liquid chromatography-tandem mass spectrometry.
|
J Proteome Res
|
2003
|
1.14
|
39
|
Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions.
|
J Proteome Res
|
2008
|
1.13
|
40
|
Enhanced sensitivity for selected reaction monitoring mass spectrometry-based targeted proteomics using a dual stage electrodynamic ion funnel interface.
|
Mol Cell Proteomics
|
2010
|
1.12
|
41
|
Application of pressurized solvents for ultrafast trypsin hydrolysis in proteomics: proteomics on the fly.
|
J Proteome Res
|
2008
|
1.11
|
42
|
Quantitative proteomics analysis of adsorbed plasma proteins classifies nanoparticles with different surface properties and size.
|
Proteomics
|
2011
|
1.06
|
43
|
Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content.
|
Anal Chem
|
2007
|
1.06
|
44
|
Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics.
|
J Proteome Res
|
2010
|
1.05
|
45
|
A proteomic view of Desulfovibrio vulgaris metabolism as determined by liquid chromatography coupled with tandem mass spectrometry.
|
Proteomics
|
2006
|
1.05
|
46
|
Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.
|
Mol Cell Proteomics
|
2014
|
1.04
|
47
|
Making broad proteome protein measurements in 1-5 min using high-speed RPLC separations and high-accuracy mass measurements.
|
Anal Chem
|
2005
|
1.04
|
48
|
Blood peptidome-degradome profile of breast cancer.
|
PLoS One
|
2010
|
1.04
|
49
|
Two-dimensional liquid chromatography system for online top-down mass spectrometry.
|
Proteomics
|
2010
|
1.03
|
50
|
A reversed-phase capillary ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) method for comprehensive top-down/bottom-up lipid profiling.
|
Anal Bioanal Chem
|
2012
|
1.03
|
51
|
Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences.
|
J Proteome Res
|
2010
|
1.02
|
52
|
Utility of the focus technologies west nile virus immunoglobulin M capture enzyme-linked immunosorbent assay for testing cerebrospinal fluid.
|
J Clin Microbiol
|
2004
|
1.02
|
53
|
Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins.
|
Anal Chem
|
2008
|
1.02
|
54
|
Enhanced top-down characterization of histone post-translational modifications.
|
Genome Biol
|
2012
|
1.01
|
55
|
More sensitive and quantitative proteomic measurements using very low flow rate porous silica monolithic LC columns with electrospray ionization-mass spectrometry.
|
J Proteome Res
|
2006
|
0.99
|
56
|
Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications.
|
Anal Chem
|
2012
|
0.99
|
57
|
Rapid sample processing for LC-MS-based quantitative proteomics using high intensity focused ultrasound.
|
J Proteome Res
|
2008
|
0.98
|
58
|
Application of the accurate mass and time tag approach in studies of the human blood lipidome.
|
J Chromatogr B Analyt Technol Biomed Life Sci
|
2008
|
0.98
|
59
|
High-definition differential ion mobility spectrometry with resolving power up to 500.
|
J Am Soc Mass Spectrom
|
2012
|
0.96
|
60
|
Strategy for degradomic-peptidomic analysis of human blood plasma.
|
J Proteome Res
|
2010
|
0.95
|
61
|
Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis.
|
J Proteome Res
|
2013
|
0.94
|
62
|
Targeted quantification of low ng/mL level proteins in human serum without immunoaffinity depletion.
|
J Proteome Res
|
2013
|
0.93
|
63
|
Mouse-specific tandem IgY7-SuperMix immunoaffinity separations for improved LC-MS/MS coverage of the plasma proteome.
|
J Proteome Res
|
2009
|
0.91
|
64
|
Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis.
|
Anal Chem
|
2013
|
0.90
|
65
|
Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides.
|
Anal Chem
|
2009
|
0.90
|
66
|
Improving N-glycan coverage using HPLC-MS with electrospray ionization at subambient pressure.
|
Anal Chem
|
2012
|
0.89
|
67
|
Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancer.
|
Proteomics Clin Appl
|
2011
|
0.89
|
68
|
The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics.
|
Mol Cell Proteomics
|
2013
|
0.89
|
69
|
Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry.
|
Proteomics
|
2014
|
0.89
|
70
|
Determination of burn patient outcome by large-scale quantitative discovery proteomics.
|
Crit Care Med
|
2013
|
0.88
|
71
|
Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles.
|
BMC Syst Biol
|
2011
|
0.88
|
72
|
Integrated post-experiment monoisotopic mass refinement: an integrated approach to accurately assign monoisotopic precursor masses to tandem mass spectrometric data.
|
Anal Chem
|
2010
|
0.88
|
73
|
Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition.
|
J Proteome Res
|
2007
|
0.88
|
74
|
Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments.
|
Anal Chem
|
2008
|
0.87
|
75
|
Signature-discovery approach for sample matching of a nerve-agent precursor using liquid chromatography-mass spectrometry, XCMS, and chemometrics.
|
Anal Chem
|
2010
|
0.84
|
76
|
Phosphopeptide elution times in reversed-phase liquid chromatography.
|
J Chromatogr A
|
2007
|
0.84
|
77
|
Proteome analyses of strains ATCC 51142 and PCC 7822 of the diazotrophic cyanobacterium Cyanothece sp. under culture conditions resulting in enhanced H₂ production.
|
Appl Environ Microbiol
|
2012
|
0.84
|
78
|
Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes.
|
J Proteome Res
|
2014
|
0.83
|
79
|
18O-labeled proteome reference as global internal standards for targeted quantification by selected reaction monitoring-mass spectrometry.
|
Mol Cell Proteomics
|
2011
|
0.83
|
80
|
LC-MS/MS based proteomic analysis and functional inference of hypothetical proteins in Desulfovibrio vulgaris.
|
Biochem Biophys Res Commun
|
2006
|
0.83
|
81
|
A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis.
|
J Proteome Res
|
2009
|
0.83
|
82
|
Tailored noise waveform/collision-induced dissociation of ions stored in a linear ion trap combined with liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry.
|
Rapid Commun Mass Spectrom
|
2004
|
0.83
|
83
|
Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.
|
J Proteome Res
|
2008
|
0.83
|
84
|
Expediting SRM assay development for large-scale targeted proteomics experiments.
|
J Proteome Res
|
2014
|
0.82
|
85
|
Fully automated multifunctional ultrahigh pressure liquid chromatography system for advanced proteome analyses.
|
J Proteome Res
|
2012
|
0.82
|
86
|
Improved methods for the enrichment and analysis of glycated peptides.
|
Anal Chem
|
2008
|
0.81
|
87
|
Regulation of the low-dose radiation paracrine-specific anchorage-independent growth response by annexin A2.
|
Radiat Res
|
2009
|
0.81
|
88
|
Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling.
|
Proteomics Clin Appl
|
2013
|
0.80
|
89
|
Microscale depletion of high abundance proteins in human biofluids using IgY14 immunoaffinity resin: analysis of human plasma and cerebrospinal fluid.
|
Anal Bioanal Chem
|
2014
|
0.80
|
90
|
Resin-assisted enrichment of N-terminal peptides for characterizing proteolytic processing.
|
Anal Chem
|
2013
|
0.79
|
91
|
Selection of the optimum electrospray voltage for gradient elution LC-MS measurements.
|
J Am Soc Mass Spectrom
|
2008
|
0.79
|
92
|
Automated immobilized metal affinity chromatography system for enrichment of Escherichia coli phosphoproteome.
|
Electrophoresis
|
2013
|
0.78
|
93
|
GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.
|
Anal Chem
|
2014
|
0.78
|
94
|
Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling.
|
J Proteome Res
|
2010
|
0.78
|
95
|
Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.
|
Int J Proteomics
|
2013
|
0.77
|
96
|
Proteomic analysis of bronchoalveolar lavage fluid proteins from mice infected with Francisella tularensis ssp. novicida.
|
J Proteome Res
|
2012
|
0.77
|
97
|
High sensitivity combined with extended structural coverage of labile compounds via nanoelectrospray ionization at subambient pressures.
|
Anal Chem
|
2014
|
0.75
|
98
|
Polysialylated N-glycans identified in human serum through combined developments in sample preparation, separations, and electrospray ionization-mass spectrometry.
|
Anal Chem
|
2014
|
0.75
|
99
|
Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.
|
PLoS One
|
2015
|
0.75
|
100
|
Signatures for mass spectrometry data quality.
|
J Proteome Res
|
2014
|
0.75
|
101
|
Identification of c-type heme-containing peptides using nonactivated immobilized metal affinity chromatography resin enrichment and higher-energy collisional dissociation.
|
Anal Chem
|
2011
|
0.75
|
102
|
Simple protein complex purification and identification method for high-throughput mapping of protein interaction networks.
|
J Proteome Res
|
2005
|
0.75
|