Polymorphism and selection in the major histocompatibility complex DRA and DQA genes in the family Equidae.

PubWeight™: 0.87‹?›

🔗 View Article (PMID 19557406)

Published in Immunogenetics on June 26, 2009

Authors

Eva Janova1, Jan Matiasovic, Jiri Vahala, Roman Vodicka, Enette Van Dyk, Petr Horin

Author Affiliations

1: Institute of Animal Genetics, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Brno, Czech Republic.

Articles cited by this

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform (2004) 72.40

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol (1986) 36.06

Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol (2005) 11.26

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol Biol Evol (2001) 4.03

Nomenclature for the major histocompatibility complexes of different species: a proposal. Immunogenetics (1990) 3.53

MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J Evol Biol (2003) 3.26

The importance of immune gene variability (MHC) in evolutionary ecology and conservation. Front Zool (2005) 2.80

Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes. Mol Biol Evol (2002) 2.77

Origin of major histocompatibility complex polymorphism: the trans-species hypothesis. Hum Immunol (1987) 2.51

Comparative genomics of major histocompatibility complexes. Immunogenetics (2004) 2.31

Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites. Mol Biol Evol (2000) 2.21

Structural basis of peptide binding and presentation by the type I diabetes-associated MHC class II molecule of NOD mice. Immunity (2000) 1.77

Limited number of patrilines in horse domestication. Nat Genet (2004) 1.70

Genetics and conservation biology. C R Biol (2003) 1.62

ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005. Immunogenetics (2006) 1.52

Mini-review: defense strategies and immunity-related genes. Eur J Immunol (2004) 1.35

Do infectious diseases drive MHC diversity? Microbes Infect (2000) 1.26

An ordered BAC contig map of the equine major histocompatibility complex. Cytogenet Genome Res (2003) 1.24

The spectrum of HLA-DQ and HLA-DR alleles, 2006: a listing correlating sequence and structure with function. Immunogenetics (2007) 1.20

Comparative genome organization of human, murine, and feline MHC class II region. Genome Res (2003) 1.09

Mitochondrial DNA evolution in the genus Equus. Mol Biol Evol (1986) 1.04

Phylogenetic relationships within the genus Equus and the evolution of alpha and theta globin genes. J Mol Evol (1998) 1.04

Extensive Mhc-DQB variation in humans and non-human primate species. Immunogenetics (2002) 1.04

MHC class II genes in European wolves: a comparison with dogs. Immunogenetics (2002) 1.01

Natural selection and the evolutionary history of major histocompatibility complex loci. Front Biosci (1998) 0.98

Polymorphism of DRA among equids. Immunogenetics (1996) 0.96

MHC polymorphism and parasites. Philos Trans R Soc Lond B Biol Sci (1994) 0.96

Polymorphism and multiple loci for the horse DQA gene. Immunogenetics (1998) 0.96

The major histocompatibility complex in swine. Immunol Rev (1999) 0.95

Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae). Immunogenetics (2006) 0.93

Density-related changes in selection pattern for major histocompatibility complex genes in fluctuating populations of voles. Mol Ecol (2007) 0.91

Analysis of goat MHC class II DRA and DRB genes: identification of the expressed gene and new DRB alleles. Immunogenetics (1998) 0.90

Major histocompatibility complex (MHC) variation in the endangered Mexican wolf and related canids. Heredity (Edinb) (2000) 0.88

Demonstration of three DRB loci in a domestic horse family. Immunogenetics (1996) 0.88

A temporal analysis shows major histocompatibility complex loci in the Scandinavian wolf population are consistent with neutral evolution. Proc Biol Sci (2004) 0.88

Evolution and trans-species polymorphism of MHC class IIbeta genes in cyprinid fish. Fish Shellfish Immunol (2005) 0.86

Comparative genome organization of the major histocompatibility complex: lessons from the Felidae. Immunol Rev (1999) 0.86

Trans-species polymorphism and evidence of selection on class II MHC loci in tuco-tucos (Rodentia: Ctenomyidae). Immunogenetics (2007) 0.86

DLA-DRB1, DQA1, and DQB1 alleles and haplotypes in North American Gray Wolves. J Hered (2007) 0.84

PERSPECTIVE: HIGHLY VARIABLE LOCI AND THEIR INTERPRETATION IN EVOLUTION AND CONSERVATION. Evolution (1999) 0.83

Evolutionary history of MHC class I genes in the mammalian order Perissodactyla. J Mol Evol (1999) 0.83

Analysis of genetic diversity at the DQA loci in African cattle: evidence for a BoLA-DQA3 locus. Immunogenetics (1997) 0.82

Polymorphisms of the equine major histocompatibility complex class II DRA locus. Tissue Antigens (2004) 0.81

Establishment of a sequence-based typing system for BoLA-DRB3 exon 2. Tissue Antigens (2003) 0.81

HLA-DR and -DQ polymorphism in Cameroon. Tissue Antigens (2001) 0.81

Novel structural features of the human histocompatibility molecules HLA-DQ as revealed by modeling based on the published structure of the related molecule HLA-DR. J Struct Biol (1997) 0.80

Phylogenetic analysis and species allocation of individual equids using microsatellite data. J Anim Breed Genet (2005) 0.79

A second locus and new alleles in the major histocompatibility complex class II (ELA-DQB) region in the horse. Anim Genet (2002) 0.78

Novel SLA-DQ alleles and their recombinant molecules in xenogeneic stimulation of human T cells. Transpl Immunol (2005) 0.78

Major histocompatibility complex locus DRA polymorphism in the endangered Sorraia horse and related breeds. J Anim Breed Genet (2005) 0.78

Nucleotide sequence of a cDNA clone of the horse (Equus caballus) DRA gene. Immunogenetics (1991) 0.77

Characterization of cattle cDNA sequences from two DQA loci. Immunogenetics (1997) 0.77

Evolutionary lineages of RT1.Ba in the Australian Rattus. Mol Biol Evol (2000) 0.77

Molecular cloning and characterization of horse DQA cDNA. Immunogenetics (1994) 0.76

Comparative sequence analysis of equine and human MHC class II DQB genes. Cytogenet Genome Res (2003) 0.75

Development of an ELA-DRA gene typing method based on pyrosequencing technology. Tissue Antigens (2008) 0.75

Articles by these authors

Serial translocation by means of circular intermediates underlies colour sidedness in cattle. Nature (2012) 1.16

Quantitative nitric oxide production by rat, bovine and porcine macrophages. Nitric Oxide (2008) 0.92

SPI-1-encoded type III secretion system of Salmonella enterica is required for the suppression of porcine alveolar macrophage cytokine expression. Vet Res (2011) 0.91

Epidemiology and interaction of Salmonella enterica serovar Derby, Infantis and Typhimurium with porcine alveolar macrophages. Vet Microbiol (2010) 0.90

Cytokine mRNA expression in porcine cell lines stimulated by enterotoxigenic Escherichia coli. Vet Microbiol (2008) 0.86

Characterisation of immunosuppression in rabbits after infection with myxoma virus. Vet Microbiol (2007) 0.82

Major histocompatibility complex and other allergy-related candidate genes associated with insect bite hypersensitivity in Icelandic horses. Mol Biol Rep (2012) 0.81

Isolation and comparison of tribe-specific centromeric repeats within Bovidae. J Appl Genet (2012) 0.81

Genetic diversity of the class II major histocompatibility DRA locus in European, Asiatic and African domestic donkeys. Infect Genet Evol (2011) 0.79

Tribe-specific satellite DNA in non-domestic Bovidae. Chromosome Res (2014) 0.78

Interaction of porcine neutrophils with different strains of enterotoxigenic Escherichia coli. Vet Microbiol (2012) 0.78

Natural killer cell receptor genes in the family Equidae: not only Ly49. PLoS One (2013) 0.78

Phylogenomic study of spiral-horned antelope by cross-species chromosome painting. Chromosome Res (2008) 0.77

Impact of Robertsonian translocation on meiosis and reproduction: an impala (Aepyceros melampus) model. J Appl Genet (2014) 0.77

The effect of adenosine on pro-inflammatory cytokine production by porcine T cells. Vet Immunol Immunopathol (2011) 0.77

Phenotypic characterisation of the monocyte subpopulations in healthy adult pigs and Salmonella-infected piglets by seven-colour flow cytometry. Res Vet Sci (2012) 0.77

Cell-mediated immune response in swine infected with Mycobacterium avium subsp. avium. Vet Immunol Immunopathol (2011) 0.76

Karyotypic relationships in Asiatic asses (kulan and kiang) as defined using horse chromosome arm-specific and region-specific probes. Chromosome Res (2009) 0.76

Association of attenuated mutants of Salmonella enterica serovar Enteritidis with porcine peripheral blood leukocytes. FEMS Microbiol Lett (2011) 0.75

Toxoplasmosis in nilgais (Boselaphus tragocamelus) and a saiga antelope (Saiga tatarica). J Zoo Wildl Med (2004) 0.75

Impact of karyotype organization on interlocus recombination between T cell receptor genes in Equidae. Cytogenet Genome Res (2015) 0.75

Genetic evidence for the existence of interleukin-23 and for variation in the interleukin-12 and interleukin-12 receptor genes in the horse. Comp Biochem Physiol Part D Genomics Proteomics (2005) 0.75

Mycobacterium avium subsp. Paratuberculosis and the expression of selected virulence and pathogenesis genes in response to 6°C, 65°c and ph 2.0. Braz J Microbiol (2011) 0.75

Immunogenomic analysis of insect bite hypersensitivity in a model horse population. Vet Immunol Immunopathol (2013) 0.75

Genetic diversity and conservation in a small endangered horse population. J Appl Genet (2013) 0.75