Published in Environ Microbiol on June 01, 2009
Oral biofilm architecture on natural teeth. PLoS One (2010) 2.78
Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranes. Antonie Van Leeuwenhoek (2011) 1.32
Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites. PLoS One (2013) 1.24
Cultivation of a Synergistetes strain representing a previously uncultivated lineage. Environ Microbiol (2010) 1.14
Telling the whole story in a 10,000-genome world. Biol Direct (2011) 1.01
Host-associated bacterial taxa from Chlorobi, Chloroflexi, GN02, Synergistetes, SR1, TM7, and WPS-2 Phyla/candidate divisions. J Oral Microbiol (2014) 0.92
Identification of a novel acetate-utilizing bacterium belonging to Synergistes group 4 in anaerobic digester sludge. ISME J (2011) 0.88
Microbial diversity in Tunisian geothermal springs as detected by molecular and culture-based approaches. Extremophiles (2010) 0.85
The Unculturables: targeted isolation of bacterial species associated with canine periodontal health or disease from dental plaque. BMC Microbiol (2014) 0.79
Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions. Microb Ecol (2015) 0.76
Large-scale evolutionary analyses on SecB subunits of bacterial sec system. PLoS One (2015) 0.75
Cloacibacillus sp., a Potential Human Pathogen Associated with Bacteremia in Quebec and New Brunswick. J Clin Microbiol (2015) 0.75
Bacterial communities associated with apical periodontitis and dental implant failure. Microb Ecol Health Dis (2016) 0.75
IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics (2009) 17.90
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature (2009) 15.06
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res (2007) 13.81
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat Methods (2010) 13.05
Prepublication data sharing. Nature (2009) 12.24
IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res (2012) 12.03
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2007) 11.24
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res (2005) 10.44
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2009) 9.98
Insights into the phylogeny and coding potential of microbial dark matter. Nature (2013) 8.55
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods (2007) 7.73
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature (2007) 7.42
The integrated microbial genomes (IMG) system. Nucleic Acids Res (2006) 7.34
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res (2007) 7.18
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res (2006) 6.79
IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res (2013) 6.14
The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res (2009) 6.07
CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats. BMC Bioinformatics (2007) 5.84
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2011) 5.79
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol (2006) 5.71
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Stand Genomic Sci (2009) 5.50
Symbiosis insights through metagenomic analysis of a microbial consortium. Nature (2006) 5.04
Complete genome sequence of Kytococcus sedentarius type strain (541). Stand Genomic Sci (2009) 3.30
IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res (2013) 2.99
Environments shape the nucleotide composition of genomes. EMBO Rep (2005) 2.96
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc Natl Acad Sci U S A (2005) 2.85
IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res (2011) 2.76
An experimental metagenome data management and analysis system. Bioinformatics (2006) 2.71
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation. PLoS One (2012) 2.25
Systematic association of genes to phenotypes by genome and literature mining. PLoS Biol (2005) 2.25
Complete genome sequence of Meiothermus ruber type strain (21). Stand Genomic Sci (2010) 1.96
Gene context analysis in the Integrated Microbial Genomes (IMG) data management system. PLoS One (2009) 1.93
Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii. PLoS One (2009) 1.83
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Stand Genomic Sci (2009) 1.82
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet (2011) 1.75
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains. Proc Natl Acad Sci U S A (2002) 1.73
Individual genome assembly from complex community short-read metagenomic datasets. ISME J (2011) 1.71
A changing of the guard. Environ Microbiol (2009) 1.66
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biol (2008) 1.60
A call for standardized classification of metagenome projects. Environ Microbiol (2010) 1.58
Improving microbial genome annotations in an integrated database context. PLoS One (2013) 1.48
Uncovering Earth's virome. Nature (2016) 1.40
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Stand Genomic Sci (2009) 1.34
Complete genome sequence of Spirosoma linguale type strain (1). Stand Genomic Sci (2010) 1.32
Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights. Genome Res (2002) 1.31
The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader. PLoS One (2010) 1.31
Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites. PLoS One (2013) 1.24
Annotation of metagenome short reads using proxygenes. Bioinformatics (2008) 1.24
Complete genome sequence of "Enterobacter lignolyticus" SCF1. Stand Genomic Sci (2011) 1.24
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Stand Genomic Sci (2010) 1.21
jClust: a clustering and visualization toolbox. Bioinformatics (2009) 1.20
IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project. PLoS One (2012) 1.20
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Stand Genomic Sci (2009) 1.17
Genomic characterization of methanomicrobiales reveals three classes of methanogens. PLoS One (2009) 1.17
High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake. Proc Natl Acad Sci U S A (2013) 1.16
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Stand Genomic Sci (2010) 1.15
Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Stand Genomic Sci (2009) 1.14
Complete genome sequence of Cryptobacterium curtum type strain (12-3). Stand Genomic Sci (2009) 1.12
Comparative genome analysis in the integrated microbial genomes (IMG) system. Methods Mol Biol (2007) 1.12
Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes. PLoS One (2011) 1.11
Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Stand Genomic Sci (2010) 1.10
Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Stand Genomic Sci (2011) 1.08
Complete genome sequence of Saccharomonospora viridis type strain (P101). Stand Genomic Sci (2009) 1.07
Complete genome sequence of Haloterrigena turkmenica type strain (4k). Stand Genomic Sci (2010) 1.06
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). Stand Genomic Sci (2011) 1.06
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME J (2010) 1.05
Complete genome sequence of Serratia plymuthica strain AS12. Stand Genomic Sci (2012) 1.05
Microbial co-habitation and lateral gene transfer: what transposases can tell us. Genome Biol (2009) 1.05
Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Stand Genomic Sci (2012) 1.05
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Stand Genomic Sci (2009) 1.04
Complete genome sequence of Desulfobulbus propionicus type strain (1pr3). Stand Genomic Sci (2011) 1.01
Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci (2009) 1.00
Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). Stand Genomic Sci (2010) 1.00
Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Stand Genomic Sci (2009) 1.00
Complete genome sequence of Dyadobacter fermentans type strain (NS114). Stand Genomic Sci (2009) 0.99
Complete genome sequence of Cellulophaga lytica type strain (LIM-21). Stand Genomic Sci (2011) 0.99
Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)). Stand Genomic Sci (2011) 0.99
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Stand Genomic Sci (2010) 0.99
Complete genome sequence of Arcobacter nitrofigilis type strain (CI). Stand Genomic Sci (2010) 0.99
Genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis lectotype strain ATCC 10988. J Bacteriol (2011) 0.98
Complete genome sequence of Planctomyces limnophilus type strain (Mü 290). Stand Genomic Sci (2010) 0.98
Complete genome sequence of Anaerococcus prevotii type strain (PC1). Stand Genomic Sci (2009) 0.97
Complete genome sequence of Desulfomicrobium baculatum type strain (X). Stand Genomic Sci (2009) 0.97
Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T)). Stand Genomic Sci (2012) 0.97
Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9. Stand Genomic Sci (2012) 0.97
Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinformatics (2009) 0.97
Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). Stand Genomic Sci (2009) 0.97
Complete genome sequence of Paludibacter propionicigenes type strain (WB4). Stand Genomic Sci (2011) 0.97
Complete genome sequence of Gordonia bronchialis type strain (3410). Stand Genomic Sci (2010) 0.96
Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1. Stand Genomic Sci (2009) 0.96
Complete genome sequence of Thermosphaera aggregans type strain (M11TL). Stand Genomic Sci (2010) 0.96
Complete genome sequence of Isosphaera pallida type strain (IS1B). Stand Genomic Sci (2011) 0.96