Published in J Gen Virol on August 19, 2009
Recombination in eukaryotic single stranded DNA viruses. Viruses (2011) 1.20
Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in southern Africa. J Virol (2011) 0.93
Evolutionary time-scale of the begomoviruses: evidence from integrated sequences in the Nicotiana genome. PLoS One (2011) 0.88
Biological invasions of geminiviruses: case study of TYLCV and Bemisia tabaci in Reunion Island. Viruses (2012) 0.86
Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography. Virol J (2009) 0.83
Base composition and translational selection are insufficient to explain codon usage bias in plant viruses. Viruses (2013) 0.82
Evolution of cocirculating varicella-zoster virus genotypes during a chickenpox outbreak in Guinea-Bissau. J Virol (2014) 0.82
Recombination hotspots and host susceptibility modulate the adaptive value of recombination during maize streak virus evolution. BMC Evol Biol (2011) 0.82
East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus. BMC Evol Biol (2012) 0.81
Multiple layers of chimerism in a single-stranded DNA virus discovered by deep sequencing. Genome Biol Evol (2015) 0.81
Application of motif-based tools on evolutionary analysis of multipartite single-stranded DNA viruses. PLoS One (2013) 0.77
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol (2007) 168.76
BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol (2007) 74.13
Relaxed phylogenetics and dating with confidence. PLoS Biol (2006) 37.68
Bayesian selection of continuous-time Markov chain evolutionary models. Mol Biol Evol (2001) 8.69
Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems. Bioinformatics (2004) 3.83
Recombination and the molecular clock. Mol Biol Evol (2000) 2.79
Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J Virol (2006) 2.36
Widely conserved recombination patterns among single-stranded DNA viruses. J Virol (2008) 1.78
Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus tomato yellow leaf curl virus. J Virol (2007) 1.68
Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon. J Gen Virol (2000) 1.46
Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda. J Gen Virol (2001) 1.43
Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses. J Gen Virol (2009) 1.30
Genetic structure and population variability of tomato yellow leaf curl China virus. J Virol (2007) 1.26
The evolutionary value of recombination is constrained by genome modularity. PLoS Genet (2005) 1.26
The prehistory of potyviruses: their initial radiation was during the dawn of agriculture. PLoS One (2008) 1.19
Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses. Virology (2007) 1.16
Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. J Gen Virol (2008) 1.12
Estimating the date of origin of an HIV-1 circulating recombinant form. Virology (2009) 1.09
Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars. J Gen Virol (1998) 1.07
A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods (2008) 1.05
Diversification of rice yellow mottle virus and related viruses spans the history of agriculture from the neolithic to the present. PLoS Pathog (2008) 1.03
Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. J Virol Methods (2006) 1.00
Rapid host adaptation by extensive recombination. J Gen Virol (2009) 1.00
A three-nucleotide mutation altering the Maize streak virus Rep pRBR-interaction motif reduces symptom severity in maize and partially reverts at high frequency without restoring pRBR-Rep binding. J Gen Virol (2005) 0.99
Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin. Virology (2006) 0.99
Genetic analysis of maize streak virus isolates from Uganda reveals widespread distribution of a recombinant variant. J Gen Virol (2007) 0.98
Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts. Virol J (2009) 0.97
Investigation of Maize streak virus pathogenicity determinants using chimaeric genomes. Virology (2002) 0.97
A novel cloning strategy for isolating, genotyping and phenotyping genetic variants of geminiviruses. Virol J (2008) 0.97
Experimental observations of rapid Maize streak virus evolution reveal a strand-specific nucleotide substitution bias. Virol J (2008) 0.96
Sequence diversity and virulence in Zea mays of Maize streak virus isolates. Virology (2001) 0.96
Restoration of native folding of single-stranded DNA sequences through reverse mutations: an indication of a new epigenetic mechanism. Arch Biochem Biophys (2006) 0.95
Assessment of codivergence of mastreviruses with their plant hosts. BMC Evol Biol (2008) 0.90
The relative infectivities and genomic characterisation of three distinct mastreviruses from South Africa. Arch Virol (2001) 0.88
Evaluation of Maize Streak Virus Pathogenicity in Differentially Resistant Zea mays Genotypes. Phytopathology (1999) 0.87
Viable chimaeric viruses confirm the biological importance of sequence specific maize streak virus movement protein and coat protein interactions. Virol J (2008) 0.86
Biological and Genomic Sequence Characterization of Maize streak virus Isolates from Wheat. Phytopathology (2002) 0.85
Analysis of the diversity of African streak mastreviruses using PCR-generated RFLPs and partial sequence data. J Virol Methods (2001) 0.82
Analysis of the genetic variability of maize streak virus. Virus Genes (1994) 0.81
Genome typing of southern African subgroup 1 geminiviruses. J Gen Virol (1992) 0.78
Research capacity. Enabling the genomic revolution in Africa. Science (2014) 3.05
Transmission of HIV-1 CTL escape variants provides HLA-mismatched recipients with a survival advantage. PLoS Pathog (2008) 2.59
Robust inference of positive selection from recombining coding sequences. Bioinformatics (2006) 2.43
Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J Virol (2006) 2.36
Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta). J Gen Virol (2012) 2.18
Endosymbiont metacommunities, mtDNA diversity and the evolution of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex. Mol Ecol (2010) 2.04
A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics. Arch Virol (2012) 2.02
Diverse circovirus-like genome architectures revealed by environmental metagenomics. J Gen Virol (2009) 2.00
Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science (2011) 1.90
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae). Arch Virol (2013) 1.69
Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infection. PLoS Pathog (2010) 1.66
Avoidance of protein fold disruption in natural virus recombinants. PLoS Pathog (2007) 1.62
The spread of tomato yellow leaf curl virus from the Middle East to the world. PLoS Pathog (2010) 1.62
Dragonfly cyclovirus, a novel single-stranded DNA virus discovered in dragonflies (Odonata: Anisoptera). J Gen Virol (2011) 1.46
Molecular mechanisms of recombination restriction in the envelope gene of the human immunodeficiency virus. PLoS Pathog (2009) 1.45
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. BMC Bioinformatics (2009) 1.42
Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus. Arch Virol (2014) 1.38
Novel myco-like DNA viruses discovered in the faecal matter of various animals. Virus Res (2013) 1.35
Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol (2015) 1.34
Genetic characteristics of HIV-1 subtype C envelopes inducing cross-neutralizing antibodies. Virology (2007) 1.31
The evolutionary value of recombination is constrained by genome modularity. PLoS Genet (2005) 1.26
High global diversity of cycloviruses amongst dragonflies. J Gen Virol (2013) 1.20
Development of phoH as a novel signature gene for assessing marine phage diversity. Appl Environ Microbiol (2011) 1.20
Recombination in eukaryotic single stranded DNA viruses. Viruses (2011) 1.20
Insights into the evolutionary history of an emerging livestock pathogen: porcine circovirus 2. J Virol (2009) 1.19
A proposal to change existing virus species names to non-Latinized binomials. Arch Virol (2010) 1.18
Exploring the diversity of plant DNA viruses and their satellites using vector-enabled metagenomics on whiteflies. PLoS One (2011) 1.17
Molecular characterisation of a novel cassava associated circular ssDNA virus. Virus Res (2012) 1.14
The Arabidopsis wall associated kinase-like 10 gene encodes a functional guanylyl cyclase and is co-expressed with pathogen defense related genes. PLoS One (2010) 1.14
Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen. J Gen Virol (2008) 1.12
Chimeric human papillomavirus type 16 (HPV-16) L1 particles presenting the common neutralizing epitope for the L2 minor capsid protein of HPV-6 and HPV-16. J Virol (2003) 1.11
Identification of a Novel Circular DNA Virus in New Zealand Fur Seal (Arctocephalus forsteri) Fecal Matter. Genome Announc (2013) 1.10
Systematic phylogenetic analysis of influenza A virus reveals many novel mosaic genome segments. Infect Genet Evol (2013) 1.09
A unicellular algal virus, Emiliania huxleyi virus 86, exploits an animal-like infection strategy. J Gen Virol (2009) 1.09
Extensive recombination detected among beak and feather disease virus isolates from breeding facilities in Poland. J Gen Virol (2013) 1.07
Evidence of unique genotypes of beak and feather disease virus in southern Africa. J Virol (2004) 1.06
Genetic variability among complete human respiratory syncytial virus subgroup A genomes: bridging molecular evolutionary dynamics and epidemiology. PLoS One (2012) 1.06
South West Indian Ocean islands tomato begomovirus populations represent a new major monopartite begomovirus group. J Gen Virol (2005) 1.06
Co-expression and promoter content analyses assign a role in biotic and abiotic stress responses to plant natriuretic peptides. BMC Plant Biol (2008) 1.06
Insights into the role and function of L2, the minor capsid protein of papillomaviruses. Arch Virol (2009) 1.05
Complex recombination patterns arising during geminivirus coinfections preserve and demarcate biologically important intra-genome interaction networks. PLoS Pathog (2011) 1.05
HIV type 1 subtype C gag and nef diversity in Southern Africa. AIDS Res Hum Retroviruses (2007) 1.05
A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. J Virol Methods (2008) 1.05
Discovery of a novel circular single-stranded DNA virus from porcine faeces. Arch Virol (2012) 1.04
Discovery of a novel mastrevirus and alphasatellite-like circular DNA in dragonflies (Epiprocta) from Puerto Rico. Virus Res (2012) 1.04
Occurrence of grapevine leafroll-associated virus complex in Napa Valley. PLoS One (2011) 1.03
More men than women make mucosal IgA antibodies to Human papillomavirus type 16 (HPV-16) and HPV-18: a study of oral HPV and oral HPV antibodies in a normal healthy population. BMC Infect Dis (2006) 1.03
Expression of HIV-1 antigens in plants as potential subunit vaccines. BMC Biotechnol (2008) 1.02
Post-translational cleavage of recombinantly expressed nitrilase from Rhodococcus rhodochrous J1 yields a stable, active helical form. FEBS J (2007) 1.02
Evidence of ancient papillomavirus recombination. J Gen Virol (2006) 1.01
Point mutation rate of bacteriophage PhiX174. Genetics (2009) 1.01
The comparative genomics of human respiratory syncytial virus subgroups A and B: genetic variability and molecular evolutionary dynamics. J Virol (2013) 1.01
Rapid host adaptation by extensive recombination. J Gen Virol (2009) 1.00
High level protein expression in plants through the use of a novel autonomously replicating geminivirus shuttle vector. Plant Biotechnol J (2009) 1.00
Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes. J Virol Methods (2006) 1.00
A three-nucleotide mutation altering the Maize streak virus Rep pRBR-interaction motif reduces symptom severity in maize and partially reverts at high frequency without restoring pRBR-Rep binding. J Gen Virol (2005) 0.99
RNA structures facilitate recombination-mediated gene swapping in HIV-1. J Virol (2010) 0.99
Genetic analysis of maize streak virus isolates from Uganda reveals widespread distribution of a recombinant variant. J Gen Virol (2007) 0.98
Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Arch Virol (2015) 0.98
Comparison of cervical and blood T-cell responses to human papillomavirus-16 in women with human papillomavirus-associated cervical intraepithelial neoplasia. Immunology (2006) 0.98
Transient expression of Human papillomavirus type 16 L1 protein in Nicotiana benthamiana using an infectious tobamovirus vector. Virus Res (2006) 0.97
Experimental evidence indicating that mastreviruses probably did not co-diverge with their hosts. Virol J (2009) 0.97
A novel cloning strategy for isolating, genotyping and phenotyping genetic variants of geminiviruses. Virol J (2008) 0.97