Published in Nat Rev Microbiol on October 12, 2009
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic. Genome Res (2013) 2.59
Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis. Proc Natl Acad Sci U S A (2012) 2.22
Phylogeography of Francisella tularensis subsp. holarctica, Europe. Emerg Infect Dis (2012) 1.39
Genomic characterization of the Bacillus cereus sensu lato species: backdrop to the evolution of Bacillus anthracis. Genome Res (2012) 1.37
Host association of Campylobacter genotypes transcends geographic variation. Appl Environ Microbiol (2010) 1.29
Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06. BMC Genomics (2010) 1.27
Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices. PLoS One (2013) 1.23
Understanding the persistence of plague foci in Madagascar. PLoS Negl Trop Dis (2013) 1.20
Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Negl Trop Dis (2011) 1.19
The landscape genetics of infectious disease emergence and spread. Mol Ecol (2010) 1.17
Molecular evidence for zoonotic transmission of an emergent, highly pathogenic Campylobacter jejuni clone in the United States. J Clin Microbiol (2011) 1.10
A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague. MBio (2013) 0.93
Increased knowledge of Francisella genus diversity highlights the benefits of optimised DNA-based assays. BMC Microbiol (2012) 0.93
Genetic populations of Bacillus anthracis isolates from Korea. J Vet Sci (2012) 0.93
Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Front Genet (2015) 0.93
Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investig Genet (2010) 0.92
Diversity of Francisella tularensis subsp. holarctica lineages, China. Emerg Infect Dis (2014) 0.87
An outbreak of tularemia in a colony of outdoor-housed rhesus macaques (Macaca mulatta). Comp Med (2012) 0.86
Differential chitinase activity and production within Francisella species, subspecies, and subpopulations. J Bacteriol (2011) 0.85
Multiple-locus, variable number of tandem repeat analysis (MLVA) of the fish-pathogen Francisella noatunensis. BMC Vet Res (2011) 0.85
A revised timeline for the origin of Plasmodium falciparum as a human pathogen. J Mol Evol (2011) 0.84
Molecular investigation of tularemia outbreaks, Spain, 1997-2008. Emerg Infect Dis (2014) 0.83
Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence. Genomics (2011) 0.83
Unveiling the novel dual specificity protein kinases in Bacillus anthracis: identification of the first prokaryotic dual specificity tyrosine phosphorylation-regulated kinase (DYRK)-like kinase. J Biol Chem (2012) 0.83
Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples. PLoS One (2014) 0.82
NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. Microb Genom (2016) 0.80
Pneumonic Plague Transmission, Moramanga, Madagascar, 2015. Emerg Infect Dis (2017) 0.75
Rapid Identification and Characterization of Microbial Pathogens by Molecular Biology Techniques. Open Microbiol J (2016) 0.75
Rapid Identification and Characterization of Francisella by Molecular Biology and Other Techniques. Open Microbiol J (2016) 0.75
Ecology of Tularemia in Central US Endemic Region. Curr Trop Med Rep (2016) 0.75
Putting leprosy on the map. Nat Genet (2009) 0.75
Galapagos III World Evolution Summit: why evolution matters. Evolution (N Y) (2013) 0.75
A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim. Mol Biol Evol (2016) 0.75
Ready or Not: Microbial Adaptive Responses in Dynamic Symbiosis Environments. J Bacteriol (2017) 0.75
Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague. PLoS Negl Trop Dis (2017) 0.75
Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. J Bacteriol (2000) 15.34
Yersinia pestis--etiologic agent of plague. Clin Microbiol Rev (1997) 14.63
Genome sequence of Yersinia pestis, the causative agent of plague. Nature (2001) 14.36
Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A (1999) 10.34
Genome sequence of Yersinia pestis KIM. J Bacteriol (2002) 7.14
Molecular evolution and diversity in Bacillus anthracis as detected by amplified fragment length polymorphism markers. J Bacteriol (1997) 6.93
Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci U S A (2004) 5.98
Natural history of plague: perspectives from more than a century of research. Annu Rev Entomol (2005) 5.43
Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol (2004) 5.14
Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A (2004) 5.09
Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A (2004) 5.04
Global genetic population structure of Bacillus anthracis. PLoS One (2007) 4.94
Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis. J Bacteriol (2004) 4.23
Molecular epidemiology, evolution, and ecology of Francisella. Ann N Y Acad Sci (2007) 3.89
Bacillus anthracis diversity in Kruger National Park. J Clin Microbiol (2000) 3.16
Survival and growth of Francisella tularensis in Acanthamoeba castellanii. Appl Environ Microbiol (2003) 3.08
Intraspecific diversity of Yersinia pestis. Clin Microbiol Rev (2004) 3.03
Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis. J Clin Microbiol (2001) 2.99
The ecology of anthrax spores: tough but not invincible. Can Vet J (1995) 2.91
Phylogeography of Francisella tularensis: global expansion of a highly fit clone. J Bacteriol (2009) 2.85
Genotyping, Orientalis-like Yersinia pestis, and plague pandemics. Emerg Infect Dis (2004) 2.76
Epidemiologic and molecular analysis of human tularemia, United States, 1964-2004. Emerg Infect Dis (2006) 2.70
Francisella tularensis in the United States. Emerg Infect Dis (2005) 2.63
Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proc Natl Acad Sci U S A (2004) 2.51
Transferable plasmid-mediated resistance to streptomycin in a clinical isolate of Yersinia pestis. Emerg Infect Dis (2001) 2.50
Diversity among French Bacillus anthracis isolates. J Clin Microbiol (2002) 2.41
Structural organization of virulence-associated plasmids of Yersinia pestis. J Bacteriol (1998) 2.22
DNA examination of ancient dental pulp incriminates typhoid fever as a probable cause of the Plague of Athens. Int J Infect Dis (2006) 2.22
First isolation of Francisella tularensis subsp. tularensis in Europe. Eur J Epidemiol (1998) 2.14
Resistance of Yersinia pestis to antimicrobial agents. Antimicrob Agents Chemother (2006) 1.97
Biogeography of diseases: a framework for analysis. Naturwissenschaften (2008) 1.92
Climate change effects on plague and tularemia in the United States. Vector Borne Zoonotic Dis (2007) 1.92
Detection of diverse new Francisella-like bacteria in environmental samples. Appl Environ Microbiol (2005) 1.86
Detection of Yersinia pestis DNA in two early medieval skeletal finds from Aschheim (Upper Bavaria, 6th century A.D.). Am J Phys Anthropol (2005) 1.83
Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J Bacteriol (2006) 1.80
Intriguing diversity of Bacillus anthracis in eastern Poland--the molecular echoes of the past outbreaks. FEMS Microbiol Lett (2004) 1.64
Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiol (2009) 1.63
Pre-Columbian origins for North American anthrax. PLoS One (2009) 1.63
In vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to ciprofloxacin. Antimicrob Agents Chemother (2003) 1.59
Yersinia pestis Orientalis in remains of ancient plague patients. Emerg Infect Dis (2007) 1.52
DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation. J Bacteriol (2004) 1.52
Plasmid content in Yersinia pestis strains of different origin. FEMS Microbiol Lett (1990) 1.50
Molecular analysis of rifampin resistance in Bacillus anthracis and Bacillus cereus. Antimicrob Agents Chemother (2002) 1.44
Modeling the geographic distribution of Bacillus anthracis, the causative agent of anthrax disease, for the contiguous United States using predictive ecological [corrected] niche modeling. Am J Trop Med Hyg (2007) 1.41
Geographic distribution and ecological niche of plague in sub-Saharan Africa. Int J Health Geogr (2008) 1.35
Yersinia pestis pFra shows biovar-specific differences and recent common ancestry with a Salmonella enterica serovar Typhi plasmid. J Bacteriol (2001) 1.29
Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. PLoS One (2007) 1.24
Field investigations of tularemia in Norway. FEMS Immunol Med Microbiol (1996) 1.23
Anthrax, but not Bacillus anthracis? PLoS Pathog (2006) 1.13
Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4. PLoS One (2007) 1.09
Molecular insights into the history of plague. Microbes Infect (2002) 1.07
Comparative and evolutionary genomics of Yersinia pestis. Microbes Infect (2004) 1.02
Anthrax: a case report and a short review of Anthrax in Australia. Med J Aust (1969) 0.94
[Geographic distribution and feature of Yersinia pestis plasmid isolated from Yunnan province]. Zhonghua Liu Xing Bing Xue Za Zhi (2001) 0.81
Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol (2004) 5.14
Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A (2004) 5.04
Global genetic population structure of Bacillus anthracis. PLoS One (2007) 4.94
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet (2010) 4.35
Molecular epidemiology, evolution, and ecology of Francisella. Ann N Y Acad Sci (2007) 3.89
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol (2009) 2.94
Phylogeography of Francisella tularensis: global expansion of a highly fit clone. J Bacteriol (2009) 2.85
Francisella tularensis in the United States. Emerg Infect Dis (2005) 2.63
Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proc Natl Acad Sci U S A (2004) 2.51
A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. J Bacteriol (2007) 1.82
Genomic islands from five strains of Burkholderia pseudomallei. BMC Genomics (2008) 1.82
Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerg Infect Dis (2012) 1.74
Systematic review and consensus guidelines for environmental sampling of Burkholderia pseudomallei. PLoS Negl Trop Dis (2013) 1.72
A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. PLoS One (2007) 1.63
Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiol (2009) 1.63
Pre-Columbian origins for North American anthrax. PLoS One (2009) 1.63
Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutat Res (2006) 1.62
Use of single nucleotide polymorphisms in the plcR gene for specific identification of Bacillus anthracis. J Clin Microbiol (2005) 1.60
VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infect Genet Evol (2006) 1.40
Phylogeography of Francisella tularensis subsp. holarctica, Europe. Emerg Infect Dis (2012) 1.39
Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathog (2010) 1.33
Identifying sources of human exposure to plague. J Clin Microbiol (2005) 1.32
Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis. PLoS One (2007) 1.31
Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. PLoS One (2012) 1.26
Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. PLoS One (2007) 1.24
Identifying experimental surrogates for Bacillus anthracis spores: a review. Investig Genet (2010) 1.23
Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Negl Trop Dis (2011) 1.19
Comparison of two multiple-locus variable-number tandem-repeat analysis methods for molecular strain typing of human Brucella melitensis isolates from the Middle East. J Clin Microbiol (2009) 1.19
Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. BMC Microbiol (2011) 1.16
Yersinia pestis DNA from skeletal remains from the 6(th) century AD reveals insights into Justinianic Plague. PLoS Pathog (2013) 1.14
Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. PLoS One (2011) 1.13
BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. PLoS One (2010) 1.11
Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92. Biotechniques (2008) 1.09
Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. PLoS One (2012) 1.07
Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA. PLoS Negl Trop Dis (2011) 1.03
Mass spectrometry provides accurate characterization of two genetic marker types in Bacillus anthracis. Biotechniques (2004) 1.02
Injectional anthrax in heroin users, Europe, 2000-2012. Emerg Infect Dis (2014) 1.01
The genetic and molecular basis of O-antigenic diversity in Burkholderia pseudomallei lipopolysaccharide. PLoS Negl Trop Dis (2012) 0.99
Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. PLoS Negl Trop Dis (2011) 0.97
Francisella tularensis subsp. novicida isolated from a human in Arizona. BMC Res Notes (2009) 0.96
Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. J Clin Microbiol (2012) 0.95
Phenotypic and functional characterization of Bacillus anthracis biofilms. Microbiology (2007) 0.94
A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague. MBio (2013) 0.93
Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investig Genet (2010) 0.92
High-throughput extraction of arthropod vector and pathogen DNA using bead milling. Biotechniques (2004) 0.91
Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens. J Microbiol Methods (2011) 0.91
Fine-scale identification of the most likely source of a human plague infection. Emerg Infect Dis (2009) 0.91
Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. PLoS One (2012) 0.87
Diversity of Francisella tularensis subsp. holarctica lineages, China. Emerg Infect Dis (2014) 0.87
Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. PLoS One (2013) 0.86
Draft Genome Sequences of Two Bulgarian Bacillus anthracis Strains. Genome Announc (2013) 0.83
Diverse Francisella tularensis strains and oropharyngeal tularemia, Turkey. Emerg Infect Dis (2015) 0.83
Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona. BMC Microbiol (2012) 0.83
Lack of genetic differentiation in aggressive and secondary bark beetles (Coleoptera: Curculionidae, Scolytinae) from Arizona. Environ Entomol (2008) 0.82
No resistance plasmid in Yersinia pestis, North America. Emerg Infect Dis (2010) 0.82
Multiple mutations in the para-sodium channel gene are associated with pyrethroid resistance in Rhipicephalus microplus from the United States and Mexico. Parasit Vectors (2014) 0.81
Selective isolation of Yersinia pestis from plague-infected fleas. J Microbiol Methods (2010) 0.80
Francisella tularensis subsp. tularensis group A.I, United States. Emerg Infect Dis (2014) 0.80
Tularemia in Alaska, 1938 - 2010. Acta Vet Scand (2011) 0.79
Water as Source of Francisella tularensis Infection in Humans, Turkey. Emerg Infect Dis (2015) 0.78
Population differences in host immune factors may influence survival of Gunnison's prairie dogs (Cynomys gunnisoni) during plague outbreaks. J Wildl Dis (2011) 0.78
Resistance to plague among black-tailed prairie dog populations. Vector Borne Zoonotic Dis (2011) 0.77
Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry. J Med Microbiol (2013) 0.77
Genetic characterization of Theileria equi infecting horses in North America: evidence for a limited source of U.S. introductions. Parasit Vectors (2013) 0.77
The innate immune response may be important for surviving plague in wild Gunnison's prairie dogs. J Wildl Dis (2013) 0.76
Spatial analysis and identification of high risk plague regions in Pakistan based on associated rodent species distribution. J Infect Dev Ctries (2016) 0.75
Notes from the Field: Fatal Pneumonic Tularemia Associated with Dog Exposure - Arizona, June 2016. MMWR Morb Mortal Wkly Rep (2017) 0.75