Differential gene expression in the developing lateral geniculate nucleus and medial geniculate nucleus reveals novel roles for Zic4 and Foxp2 in visual and auditory pathway development.

PubWeight™: 0.85‹?›

🔗 View Article (PMC 3395072)

Published in J Neurosci on October 28, 2009

Authors

Sam Horng1, Gabriel Kreiman, Charlene Ellsworth, Damon Page, Marissa Blank, Kathleen Millen, Mriganka Sur

Author Affiliations

1: Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

Articles cited by this

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A (2005) 167.46

Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A (2001) 132.88

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics (2003) 82.89

Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74

The classical complement cascade mediates CNS synapse elimination. Cell (2007) 9.06

Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo. Neuron (2005) 7.28

Promoting axon regeneration in the adult CNS by modulation of the PTEN/mTOR pathway. Science (2008) 6.86

Vascular endothelial growth factor-A is a survival factor for retinal neurons and a critical neuroprotectant during the adaptive response to ischemic injury. Am J Pathol (2007) 3.93

Architecture and activity-mediated refinement of axonal projections from a mosaic of genetically identified retinal ganglion cells. Neuron (2008) 3.41

Patterning and plasticity of the cerebral cortex. Science (2005) 3.30

Molecular identification of a retinal cell type that responds to upward motion. Nature (2008) 3.28

Incomplete and inaccurate vocal imitation after knockdown of FoxP2 in songbird basal ganglia nucleus Area X. PLoS Biol (2007) 3.17

Tumor necrosis factor-alpha mediates one component of competitive, experience-dependent plasticity in developing visual cortex. Neuron (2008) 3.07

Altered brain serotonin homeostasis and locomotor insensitivity to 3, 4-methylenedioxymethamphetamine ("Ecstasy") in serotonin transporter-deficient mice. Mol Pharmacol (1998) 2.94

FoxP2 expression in avian vocal learners and non-learners. J Neurosci (2004) 2.87

Altered ultrasonic vocalization in mice with a disruption in the Foxp2 gene. Proc Natl Acad Sci U S A (2005) 2.76

G1 phase regulation, area-specific cell cycle control, and cytoarchitectonics in the primate cortex. Neuron (2005) 2.75

Serotonin modulates the response of embryonic thalamocortical axons to netrin-1. Nat Neurosci (2007) 2.70

FOXP2 and the neuroanatomy of speech and language. Nat Rev Neurosci (2005) 2.68

Early asymmetry of gene transcription in embryonic human left and right cerebral cortex. Science (2005) 2.56

Coordinated actions of the forkhead protein Foxp1 and Hox proteins in the columnar organization of spinal motor neurons. Neuron (2008) 2.44

Tumor necrosis factor-alpha mediates oligodendrocyte death and delayed retinal ganglion cell loss in a mouse model of glaucoma. J Neurosci (2006) 2.37

The transcription factor Engrailed-2 guides retinal axons. Nature (2005) 2.11

Ephrin-As and neural activity are required for eye-specific patterning during retinogeniculate mapping. Nat Neurosci (2005) 2.11

Compartments and their boundaries in vertebrate brain development. Nat Rev Neurosci (2005) 2.01

Embryonic signaling centers expressing BMP, WNT and FGF proteins interact to pattern the cerebral cortex. Development (2004) 1.95

Generating the cerebral cortical area map. Annu Rev Neurosci (2003) 1.87

Functional genetic analysis of mutations implicated in a human speech and language disorder. Hum Mol Genet (2006) 1.85

Induction of visual orientation modules in auditory cortex. Nature (2000) 1.74

Visual behaviour mediated by retinal projections directed to the auditory pathway. Nature (2000) 1.74

The role of Zic genes in neural development. Mol Cell Neurosci (2004) 1.73

Early neocortical regionalization in the absence of thalamic innervation. Science (1999) 1.70

Patterning centers, regulatory genes and extrinsic mechanisms controlling arealization of the neocortex. Curr Opin Neurobiol (2002) 1.63

Heterozygous deletion of the linked genes ZIC1 and ZIC4 is involved in Dandy-Walker malformation. Nat Genet (2004) 1.62

Hedgehog signaling from the ZLI regulates diencephalic regional identity. Nat Neurosci (2004) 1.60

FoxP2 regulation during undirected singing in adult songbirds. J Neurosci (2006) 1.59

Characterization of progenitor domains in the developing mouse thalamus. J Comp Neurol (2007) 1.55

Experimentally induced visual projections into auditory thalamus and cortex. Science (1988) 1.53

Genetic deletion of pregnancy-associated plasma protein-A is associated with resistance to atherosclerotic lesion development in apolipoprotein E-deficient mice challenged with a high-fat diet. Circ Res (2007) 1.49

Segmental organization of embryonic diencephalon. Nature (1993) 1.48

Magnitude of binocular vision controlled by islet-2 repression of a genetic program that specifies laterality of retinal axon pathfinding. Cell (2004) 1.47

Early lesions of superior colliculus: factors affecting the formation of abnormal retinal projections. Brain Behav Evol (1973) 1.41

Fgf8 controls regional identity in the developing thalamus. Development (2008) 1.40

Refinement of the retinogeniculate pathway. J Physiol (2008) 1.36

Excessive activation of serotonin (5-HT) 1B receptors disrupts the formation of sensory maps in monoamine oxidase a and 5-ht transporter knock-out mice. J Neurosci (2001) 1.33

Combinatorial expression patterns of LIM-homeodomain and other regulatory genes parcellate developing thalamus. J Neurosci (2001) 1.32

Human vascular endothelial growth factor protects axotomized retinal ganglion cells in vivo by activating ERK-1/2 and Akt pathways. J Neurosci (2006) 1.31

Sonic hedgehog signaling controls thalamic progenitor identity and nuclei specification in mice. J Neurosci (2009) 1.26

Wnt signaling is required at distinct stages of development for the induction of the posterior forebrain. Development (2003) 1.26

Cell-cycle kinetics of neocortical precursors are influenced by embryonic thalamic axons. J Neurosci (2001) 1.23

Modulation of the cell cycle contributes to the parcellation of the primate visual cortex. Nature (1993) 1.20

The role of Sonic hedgehog of neural origin in thalamic differentiation in the mouse. J Neurosci (2009) 1.17

Molecular organization of the ferret visual thalamus. J Neurosci (2004) 1.13

Excess of serotonin (5-HT) alters the segregation of ispilateral and contralateral retinal projections in monoamine oxidase A knock-out mice: possible role of 5-HT uptake in retinal ganglion cells during development. J Neurosci (1999) 1.10

Severe defects in dorsal thalamic development in low-density lipoprotein receptor-related protein-6 mutants. J Neurosci (2004) 1.10

Gene expression patterns in visual cortex during the critical period: synaptic stabilization and reversal by visual deprivation. Proc Natl Acad Sci U S A (2008) 1.05

Differential gene expression between sensory neocortical areas: potential roles for Ten_m3 and Bcl6 in patterning visual and somatosensory pathways. Cereb Cortex (2007) 1.04

Expression patterns of Brx1 (Rieg gene), Sonic hedgehog, Nkx2.2, Dlx1 and Arx during zona limitans intrathalamica and embryonic ventral lateral geniculate nuclear formation. Mech Dev (1997) 1.02

Patterning the mammalian cerebral cortex. Curr Opin Neurobiol (2001) 0.98

Nucleus- and cell-specific gene expression in monkey thalamus. Proc Natl Acad Sci U S A (2007) 0.89

Patterning the developing diencephalon. Brain Res Rev (2006) 0.88

Gene set enrichment analysis. Methods Mol Biol (2009) 0.87

Lack of 5-HT(1B) receptor and of serotonin transporter have different effects on the segregation of retinal axons in the lateral geniculate nucleus compared to the superior colliculus. Neuroscience (2002) 0.86

Acceleration of visually cued conditioned fear through the auditory pathway. Nat Neurosci (2004) 0.86

Molecular correlates of laminar differences in the macaque dorsal lateral geniculate nucleus. J Neurosci (2008) 0.85

Zic4, a zinc-finger transcription factor, is expressed in the developing mouse nervous system. Dev Dyn (2005) 0.83

Enhanced plasticity of retinothalamic projections in an ephrin-A2/A5 double mutant. J Neurosci (2001) 0.80

Retinal axon guidance by region-specific cues in diencephalon. Development (1998) 0.78

Articles by these authors

A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci U S A (2004) 44.81

Widespread transcription at neuronal activity-regulated enhancers. Nature (2010) 16.52

Variation in alternative splicing across human tissues. Genome Biol (2004) 5.70

Tuned responses of astrocytes and their influence on hemodynamic signals in the visual cortex. Science (2008) 4.82

Fast readout of object identity from macaque inferior temporal cortex. Science (2005) 4.54

Neural correlates of consciousness in humans. Nat Rev Neurosci (2002) 3.28

Partial reversal of Rett Syndrome-like symptoms in MeCP2 mutant mice. Proc Natl Acad Sci U S A (2009) 3.23

Timing, timing, timing: fast decoding of object information from intracranial field potentials in human visual cortex. Neuron (2009) 2.72

Division and subtraction by distinct cortical inhibitory networks in vivo. Nature (2012) 2.68

Internally generated preactivation of single neurons in human medial frontal cortex predicts volition. Neuron (2011) 2.58

Tissue-specific thyroid hormone deprivation and excess in monocarboxylate transporter (mct) 8-deficient mice. Endocrinology (2006) 2.56

Response features of parvalbumin-expressing interneurons suggest precise roles for subtypes of inhibition in visual cortex. Neuron (2010) 2.55

Invariant computations in local cortical networks with balanced excitation and inhibition. Nat Neurosci (2005) 2.50

Harnessing neuroplasticity for clinical applications. Brain (2011) 2.45

Remodeling of synaptic structure in sensory cortical areas in vivo. J Neurosci (2006) 2.36

In vivo two-photon imaging reveals a role of arc in enhancing orientation specificity in visual cortex. Cell (2006) 2.28

Dynamic population coding of category information in inferior temporal and prefrontal cortex. J Neurophysiol (2008) 2.14

Dendritic spine dynamics are regulated by monocular deprivation and extracellular matrix degradation. Neuron (2004) 2.12

Synaptic integration by V1 neurons depends on location within the orientation map. Neuron (2002) 2.02

Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex. Nat Neurosci (2006) 1.86

Global transcriptional and translational repression in human-embryonic-stem-cell-derived Rett syndrome neurons. Cell Stem Cell (2013) 1.80

Fabrication and biocompatibility of polypyrrole implants suitable for neural prosthetics. Biomaterials (2005) 1.78

Motility of dendritic spines in visual cortex in vivo: changes during the critical period and effects of visual deprivation. Proc Natl Acad Sci U S A (2003) 1.65

Loss of Arc renders the visual cortex impervious to the effects of sensory experience or deprivation. Nat Neurosci (2010) 1.48

Molecular mechanisms of experience-dependent plasticity in visual cortex. Philos Trans R Soc Lond B Biol Sci (2009) 1.43

Dynamics of neuronal sensitivity in visual cortex and local feature discrimination. Nat Neurosci (2002) 1.41

Safety, pharmacokinetics, and preliminary assessment of efficacy of mecasermin (recombinant human IGF-1) for the treatment of Rett syndrome. Proc Natl Acad Sci U S A (2014) 1.40

miR-132, an experience-dependent microRNA, is essential for visual cortex plasticity. Nat Neurosci (2011) 1.40

Structural dynamics of synapses in vivo correlate with functional changes during experience-dependent plasticity in visual cortex. J Neurosci (2010) 1.37

Haploinsufficiency for Pten and Serotonin transporter cooperatively influences brain size and social behavior. Proc Natl Acad Sci U S A (2009) 1.30

Nucleus basalis-enabled stimulus-specific plasticity in the visual cortex is mediated by astrocytes. Proc Natl Acad Sci U S A (2012) 1.30

The coordinated mapping of visual space and response features in visual cortex. Neuron (2005) 1.28

A quantitative theory of immediate visual recognition. Prog Brain Res (2007) 1.26

Molecular signatures of human induced pluripotent stem cells highlight sex differences and cancer genes. Cell Stem Cell (2012) 1.23

The Emerging Role of microRNAs in Schizophrenia and Autism Spectrum Disorders. Front Psychiatry (2012) 1.22

Loss of cyclin D1 impairs cerebellar development and suppresses medulloblastoma formation. Development (2006) 1.22

Ten_m3 regulates eye-specific patterning in the mammalian visual pathway and is required for binocular vision. PLoS Biol (2007) 1.20

Hierarchical Bayesian modeling and Markov chain Monte Carlo sampling for tuning-curve analysis. J Neurophysiol (2009) 1.18

From neurons to circuits: linear estimation of local field potentials. J Neurosci (2009) 1.17

Rett syndrome: genes, synapses, circuits, and therapeutics. Front Psychiatry (2012) 1.14

Tilt aftereffect and adaptation-induced changes in orientation tuning in visual cortex. J Neurophysiol (2005) 1.13

Gene expression patterns in visual cortex during the critical period: synaptic stabilization and reversal by visual deprivation. Proc Natl Acad Sci U S A (2008) 1.05

Differential gene expression between sensory neocortical areas: potential roles for Ten_m3 and Bcl6 in patterning visual and somatosensory pathways. Cereb Cortex (2007) 1.04

Plasticity and specificity of cortical processing networks. Trends Neurosci (2006) 1.04

Effects of synaptic activity on dendritic spine motility of developing cortical layer v pyramidal neurons. Cereb Cortex (2005) 0.99

V1 neurons signal acquisition of an internal representation of stimulus location. Science (2003) 0.98

Multi-scale correlation structure of gene expression in the brain. Neural Netw (2011) 0.98

Synaptic reorganization in scaled networks of controlled size. J Neurosci (2007) 0.97

Functional biases in visual cortex neurons with identified projections to higher cortical targets. Curr Biol (2012) 0.95

Ephrin-A2 and -A5 influence patterning of normal and novel retinal projections to the thalamus: conserved mapping mechanisms in visual and auditory thalamic targets. J Comp Neurol (2005) 0.93

Denoising two-photon calcium imaging data. PLoS One (2011) 0.93

Alteration of visual input results in a coordinated reorganization of multiple visual cortex maps. J Neurosci (2007) 0.93

Stimulus encoding and feature extraction by multiple sensory neurons. J Neurosci (2002) 0.92

Response selectivity is correlated to dendritic structure in parvalbumin-expressing inhibitory neurons in visual cortex. J Neurosci (2013) 0.91

Dynamics of orientation tuning in cat v1 neurons depend on location within layers and orientation maps. Front Neurosci (2007) 0.91

On the minimization of fluctuations in the response times of autoregulatory gene networks. Biophys J (2011) 0.91

Reduced conditioned fear response in mice that lack Dlx1 and show subtype-specific loss of interneurons. J Neurodev Disord (2009) 0.91

Mechanisms and therapeutic challenges in autism spectrum disorders: insights from Rett syndrome. Curr Opin Neurol (2013) 0.90

Conservation of transcription factor binding events predicts gene expression across species. Nucleic Acids Res (2011) 0.90

Consciousness and neurosurgery. Neurosurgery (2004) 0.90

Sensory adaptation and short term plasticity as Bayesian correction for a changing brain. PLoS One (2010) 0.89

Local networks in visual cortex and their influence on neuronal responses and dynamics. J Physiol Paris (2005) 0.89

Robust selectivity to two-object images in human visual cortex. Curr Biol (2010) 0.89

The operating regime of local computations in primary visual cortex. Cereb Cortex (2009) 0.89

Influence of a subtype of inhibitory interneuron on stimulus-specific responses in visual cortex. Cereb Cortex (2011) 0.89

Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites. Nucleic Acids Res (2012) 0.88

Experience-dependent regulation of CaMKII activity within single visual cortex synapses in vivo. Proc Natl Acad Sci U S A (2011) 0.87

Acceleration of visually cued conditioned fear through the auditory pathway. Nat Neurosci (2004) 0.86

Rapid experience-dependent plasticity of synapse function and structure in ferret visual cortex in vivo. Proc Natl Acad Sci U S A (2011) 0.86

Zac1 plays a key role in the development of specific neuronal subsets in the mouse cerebellum. Neural Dev (2011) 0.85

Visual activity and cortical rewiring: activity-dependent plasticity of cortical networks. Prog Brain Res (2006) 0.85

Computerized assessment of social approach behavior in mouse. Front Behav Neurosci (2009) 0.85

Bottom-up and top-down dynamics in visual cortex. Prog Brain Res (2005) 0.84

Image structure at the center of gaze during free viewing. J Cogn Neurosci (2006) 0.84

Deletion of Ten-m3 induces the formation of eye dominance domains in mouse visual cortex. Cereb Cortex (2012) 0.83

Intrinsic patterning and experience-dependent mechanisms that generate eye-specific projections and binocular circuits in the visual pathway. Curr Opin Neurobiol (2009) 0.83

Imaging prior information in the brain. Proc Natl Acad Sci U S A (2012) 0.83

Two-way communication with neural networks in vivo using focused light. Nat Protoc (2013) 0.82

Measuring sparseness in the brain: comment on Bowers (2009). Psychol Rev (2010) 0.82

How cortical neurons help us see: visual recognition in the human brain. J Clin Invest (2010) 0.81

Role of afferent activity in the development of cortical specification. Results Probl Cell Differ (2002) 0.79

Normal eye-specific patterning of retinal inputs to murine subcortical visual nuclei in the absence of brain-derived neurotrophic factor. Vis Neurosci (2005) 0.78

Short temporal asynchrony disrupts visual object recognition. J Vis (2014) 0.78

Toward unmasking the dynamics of visual perception. Neuron (2009) 0.78

Depression-biased reverse plasticity rule is required for stable learning at top-down connections. PLoS Comput Biol (2012) 0.78

Cerebellar hypoplasia and Cohen syndrome: a confirmed association. Am J Med Genet A (2010) 0.77

Experience-dependent plasticity in visual cortex: Dendritic spines and visual responsiveness. Commun Integr Biol (2011) 0.77

Role of calcineurin in activity-dependent pattern formation in the dorsal lateral geniculate nucleus of the ferret. J Neurobiol (2003) 0.77

MeCP2: making sense of missense in Rett syndrome. Cell Res (2013) 0.76

Temporal stability of visually selective responses in intracranial field potentials recorded from human occipital and temporal lobes. J Neurophysiol (2012) 0.76

Theory on the coupled stochastic dynamics of transcription and splice-site recognition. PLoS Comput Biol (2012) 0.76

Neural dynamics underlying target detection in the human brain. J Neurosci (2014) 0.76

Modeling two-photon calcium fluorescence of episodic V1 recordings using multifrequency analysis. Conf Proc IEEE Eng Med Biol Soc (2011) 0.75

Face recognition: vision and emotions beyond the bubble. Curr Biol (2011) 0.75

A statistical model for multiphoton calcium imaging of the brain. Conf Proc IEEE Eng Med Biol Soc (2009) 0.75

Neuroscience: what we cannot model, we do not understand. Curr Biol (2011) 0.75

Q & A: Mriganka Sur. Curr Biol (2003) 0.75