Published in BMC Genomics on December 03, 2009
Extending Asia Pacific bioinformatics into new realms in the "-omics" era. BMC Genomics (2009) 1.15
pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes. Immunome Res (2010) 0.83
A comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation. BMC Genomics (2011) 0.79
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol (1993) 64.61
WebLogo: a sequence logo generator. Genome Res (2004) 59.58
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res (2003) 52.80
WHAT IF: a molecular modeling and drug design program. J Mol Graph (1990) 24.35
Comparative protein structure modeling of genes and genomes. Annu Rev Biophys Biomol Struct (2000) 17.81
McKusick's Online Mendelian Inheritance in Man (OMIM). Nucleic Acids Res (2008) 12.83
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI. Nucleic Acids Res (2006) 2.40
Deviations from standard atomic volumes as a quality measure for protein crystal structures. J Mol Biol (1996) 2.31
Alpha-mannosidosis. Orphanet J Rare Dis (2008) 1.69
Functional and structural studies of wild type SOX9 and mutations causing campomelic dysplasia. J Biol Chem (1999) 1.28
The structure of bovine lysosomal alpha-mannosidase suggests a novel mechanism for low-pH activation. J Mol Biol (2003) 1.17
Functional and structural implications of the complement factor H Y402H polymorphism associated with age-related macular degeneration. Invest Ophthalmol Vis Sci (2008) 1.12
Missense and nonsense mutations in the lysosomal alpha-mannosidase gene (MANB) in severe and mild forms of alpha-mannosidosis. Am J Hum Genet (1998) 1.11
Purification of feline lysosomal alpha-mannosidase, determination of its cDNA sequence and identification of a mutation causing alpha-mannosidosis in Persian cats. Biochem J (1997) 1.06
Aromatic interactions in peptides: impact on structure and function. Biopolymers (2004) 1.05
Spectrum of mutations in alpha-mannosidosis. Am J Hum Genet (1999) 1.01
Purification of bovine lysosomal alpha-mannosidase, characterization of its gene and determination of two mutations that cause alpha-mannosidosis. Eur J Biochem (1997) 0.94
Identification of Asp197 as the catalytic nucleophile in the family 38 alpha-mannosidase from bovine kidney lysosomes. FEBS Lett (2000) 0.91
alpha-Mannosidosis in the guinea pig: cloning of the lysosomal alpha-mannosidase cDNA and identification of a missense mutation causing alpha-mannosidosis. Biochim Biophys Acta (2002) 0.85
Alpha-mannosidosis in the guinea pig: a new animal model for lysosomal storage disorders. Pediatr Res (1999) 0.82
Identification and characterization of five novel MAN2B1 mutations in Italian patients with alpha-mannosidosis. Hum Mutat (2005) 0.81
Alpha-mannosidosis and mutational analysis in a Turkish patient. Turk J Pediatr (2003) 0.81
Funtional characterization of four novel MAN2B1 mutations causing juvenile onset alpha-mannosidosis. Clin Chim Acta (2006) 0.80
Early onset alpha-mannosidosis with slow progression in three Hispanic males. Dev Med Child Neurol (2007) 0.80
Molecular modeling on the Web. Biotechniques (2001) 0.79
Pinpointing the putative heparin/sialic acid-binding residues in the 'sushi' domain 7 of factor H: a molecular modeling study. Pac Symp Biocomput (2000) 0.78
The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (2009) 8.23
A hitchhiker's guide to expressed sequence tag (EST) analysis. Brief Bioinform (2006) 3.36
Whole-genome sequence of Schistosoma haematobium. Nat Genet (2012) 2.91
A comprehensive assessment of N-terminal signal peptides prediction methods. BMC Bioinformatics (2009) 2.85
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI. Nucleic Acids Res (2006) 2.40
Ascaris suum draft genome. Nature (2011) 2.16
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res (2010) 1.97
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform. Nucleic Acids Res (2007) 1.95
A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein. Eur J Immunol (2003) 1.77
An integrated transcriptomics and proteomics analysis of the secretome of the helminth pathogen Fasciola hepatica: proteins associated with invasion and infection of the mammalian host. Mol Cell Proteomics (2009) 1.63
Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi). BMC Genomics (2010) 1.44
A workflow for mutation extraction and structure annotation. J Bioinform Comput Biol (2007) 1.42
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. Stand Genomic Sci (2010) 1.35
MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules. Bioinformatics (2003) 1.25
A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era. BMC Genomics (2009) 1.25
Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) (2011) 1.24
SPdb--a signal peptide database. BMC Bioinformatics (2005) 1.23
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing. Nucleic Acids Res (2010) 1.22
DEDB: a database of Drosophila melanogaster exons in splicing graph form. BMC Bioinformatics (2004) 1.20
Methods and protocols for prediction of immunogenic epitopes. Brief Bioinform (2006) 1.19
SVM-based prediction of caspase substrate cleavage sites. BMC Bioinformatics (2006) 1.17
kappa-Hefutoxin1, a novel toxin from the scorpion Heterometrus fulvipes with unique structure and function. Importance of the functional diad in potassium channel selectivity. J Biol Chem (2002) 1.17
CASVM: web server for SVM-based prediction of caspase substrates cleavage sites. Bioinformatics (2007) 1.16
Extending Asia Pacific bioinformatics into new realms in the "-omics" era. BMC Genomics (2009) 1.15
SCORPION2: a database for structure-function analysis of scorpion toxins. Toxicon (2006) 1.14
Massively parallel sequencing and analysis of the Necator americanus transcriptome. PLoS Negl Trop Dis (2010) 1.12
Functional and structural implications of the complement factor H Y402H polymorphism associated with age-related macular degeneration. Invest Ophthalmol Vis Sci (2008) 1.12
Modeling the structure of bound peptide ligands to major histocompatibility complex. Protein Sci (2004) 1.11
Flanking signal and mature peptide residues influence signal peptide cleavage. BMC Bioinformatics (2008) 1.10
Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides. Bioinformatics (2006) 1.10
Modeling the bound conformation of Pemphigus vulgaris-associated peptides to MHC Class II DR and DQ alleles. Immunome Res (2006) 1.04
MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions. Appl Bioinformatics (2006) 1.02
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences. Nucleic Acids Res (2003) 1.01
Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva. PLoS Negl Trop Dis (2008) 1.01
Needles in the EST haystack: large-scale identification and analysis of excretory-secretory (ES) proteins in parasitic nematodes using expressed sequence tags (ESTs). PLoS Negl Trop Dis (2008) 1.00
ASGS: an alternative splicing graph web service. Nucleic Acids Res (2006) 0.99
First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach. Infect Genet Evol (2010) 0.98
Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse. BMC Genomics (2009) 0.97
Xpro: database of eukaryotic protein-encoding genes. Nucleic Acids Res (2004) 0.97
Physiochemical property space distribution among human metabolites, drugs and toxins. BMC Bioinformatics (2009) 0.95
The integrin alpha L beta 2 hybrid domain serves as a link for the propagation of activation signal from its stalk regions to the I-like domain. J Biol Chem (2004) 0.93
In silico secretome analysis approach for next generation sequencing transcriptomic data. BMC Genomics (2011) 0.89
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics. Bioinformatics (2006) 0.89
XdomView: protein domain and exon position visualization. Bioinformatics (2003) 0.89
CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge. BMC Bioinformatics (2008) 0.89
Towards a career in bioinformatics. BMC Bioinformatics (2009) 0.88
Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage. BMC Bioinformatics (2008) 0.87
Delineation of modular proteins: domain boundary prediction from sequence information. Brief Bioinform (2004) 0.87
Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs). BMC Genomics (2012) 0.86
Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention. Biotechnol Adv (2010) 0.86
Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors. BMC Bioinformatics (2008) 0.86
Gender-enriched transcripts in Haemonchus contortus--predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans. Int J Parasitol (2007) 0.85
Network analysis of human protein location. BMC Bioinformatics (2010) 0.85
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches. BMC Bioinformatics (2008) 0.85
An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications. BMC Genomics (2012) 0.85
MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures. Bioinformatics (2011) 0.84
InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia. BMC Genomics (2011) 0.84
In silico characterization of immunogenic epitopes presented by HLA-Cw*0401. Immunome Res (2007) 0.84
InCoB2013 introduces Systems Biology as a major conference theme. BMC Syst Biol (2013) 0.83
Oesophagostomum dentatum: potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects. Biotechnol Adv (2007) 0.83
InCoB2014: mining biological data from genomics for transforming industry and health. BMC Genomics (2014) 0.83
pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes. Immunome Res (2010) 0.83
A multi-factor model for caspase degradome prediction. BMC Genomics (2009) 0.83
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs. BMC Bioinformatics (2012) 0.82
APBioNet-transforming bioinformatics in the Asia-Pacific region. PLoS Comput Biol (2013) 0.82
InCoB2010 - 9th International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010. BMC Bioinformatics (2010) 0.82
Structural diversity of biologically interesting datasets: a scaffold analysis approach. J Cheminform (2011) 0.82
Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6-associated pemphigus vulgaris. BMC Bioinformatics (2006) 0.81
An ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia. J Ethnopharmacol (2011) 0.81
The transcriptome analysis of Strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease. PLoS Negl Trop Dis (2012) 0.81
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins. Nucleic Acids Res (2004) 0.81
Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases. BMC Genomics (2009) 0.81
Improved insights into the transcriptomes of the human hookworm Necator americanus--fundamental and biotechnological implications. Biotechnol Adv (2008) 0.81
The transcriptome of Echinostoma caproni adults: further characterization of the secretome and identification of new potential drug targets. J Proteomics (2013) 0.81
Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework. BMC Syst Biol (2013) 0.80
TranSeqAnnotator: large-scale analysis of transcriptomic data. BMC Bioinformatics (2012) 0.79
Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida). Gene (2004) 0.79
Understanding TR binding to pMHC complexes: how does a TR scan many pMHC complexes yet preferentially bind to one. PLoS One (2011) 0.79
A comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation. BMC Genomics (2011) 0.79
Systems Proteomics View of the Endogenous Human Claudin Protein Family. J Proteome Res (2016) 0.79
Unlocking the puzzling biology of the black Périgord truffle Tuber melanosporum. J Proteome Res (2013) 0.78
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance. BMC Bioinformatics (2011) 0.78
Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome. J Proteome Res (2013) 0.78
Genomic characterization of Tv-ant-1, a Caenorhabditis elegans tag-61 homologue from the parasitic nematode Trichostrongylus vitrinus. Gene (2007) 0.77
Accurate prediction of scorpion toxin functional properties from primary structures. J Mol Graph Model (2005) 0.77
Simple re-instantiation of small databases using cloud computing. BMC Genomics (2013) 0.77
Deduction of functional peptide motifs in scorpion toxins. J Pept Sci (2006) 0.75
Discrete structural features among interface residue-level classes. BMC Bioinformatics (2015) 0.75
GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history. BMC Genomics (2015) 0.75
InCoB2014: Systems Biology update from the Asia-Pacific. Introduction. BMC Syst Biol (2014) 0.75
InCoB2014: bioinformatics to tackle the data to knowledge challenge. Introduction. BMC Bioinformatics (2014) 0.75
Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics. J Proteome Res (2014) 0.75
Introduction to selected papers from GIW/InCoB 2015. J Bioinform Comput Biol (2015) 0.75
Divergent response of homologous ATP sites to stereospecific ligand fluorination for selectivity enhancement. Org Biomol Chem (2017) 0.75
Critical technologies for bioinformatics. Brief Bioinform (2008) 0.75
Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design. Methods Mol Biol (2014) 0.75