Published in BMC Bioinformatics on December 03, 2009
Weakly supervised learning of biomedical information extraction from curated data. BMC Bioinformatics (2016) 1.39
Allie: a database and a search service of abbreviations and long forms. Database (Oxford) (2011) 1.12
BioC interoperability track overview. Database (Oxford) (2014) 1.11
Machine learning with naturally labeled data for identifying abbreviation definitions. BMC Bioinformatics (2011) 1.11
Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora. Database (Oxford) (2014) 0.97
Detecting abbreviations in discharge summaries using machine learning methods. AMIA Annu Symp Proc (2011) 0.91
Towards a career in bioinformatics. BMC Bioinformatics (2009) 0.88
Combined SVM-CRFs for biological named entity recognition with maximal bidirectional squeezing. PLoS One (2012) 0.86
Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization. BMC Bioinformatics (2011) 0.81
Evaluation and cross-comparison of lexical entities of biological interest (LexEBI). PLoS One (2013) 0.79
AuDis: an automatic CRF-enhanced disease normalization in biomedical text. Database (Oxford) (2016) 0.77
A literature network of human genes for high-throughput analysis of gene expression. Nat Genet (2001) 13.88
A simple algorithm for identifying abbreviation definitions in biomedical text. Pac Symp Biocomput (2003) 9.78
Literature mining for the biologist: from information retrieval to biological discovery. Nat Rev Genet (2006) 8.23
BioCreAtIvE task 1A: gene mention finding evaluation. BMC Bioinformatics (2005) 8.09
A survey of current work in biomedical text mining. Brief Bioinform (2005) 7.64
ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text. Bioinformatics (2005) 6.92
Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biol (2008) 6.38
Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
Disambiguating proteins, genes, and RNA in text: a machine learning approach. Bioinformatics (2001) 3.66
Exploring the boundaries: gene and protein identification in biomedical text. BMC Bioinformatics (2005) 3.61
Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction. Genome Inform Ser Workshop Genome Inform (1998) 3.35
Creating an online dictionary of abbreviations from MEDLINE. J Am Med Inform Assoc (2002) 3.32
Protein names and how to find them. Int J Med Inform (2002) 3.29
Mapping abbreviations to full forms in biomedical articles. J Am Med Inform Assoc (2002) 3.29
Term identification in the biomedical literature. J Biomed Inform (2004) 3.22
Playing biology's name game: identifying protein names in scientific text. Pac Symp Biocomput (2003) 3.03
Recognition of protein/gene names from text using an ensemble of classifiers. BMC Bioinformatics (2005) 2.42
Automatic extraction of acronym-meaning pairs from MEDLINE databases. Stud Health Technol Inform (2001) 2.35
Integrating high dimensional bi-directional parsing models for gene mention tagging. Bioinformatics (2008) 2.33
GAPSCORE: finding gene and protein names one word at a time. Bioinformatics (2004) 2.05
Abbreviation definition identification based on automatic precision estimates. BMC Bioinformatics (2008) 1.91
Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. Bioinformatics (2007) 1.39
SaRAD: a Simple and Robust Abbreviation Dictionary. Bioinformatics (2004) 1.33
A literature based method for identifying gene-disease connections. Proc IEEE Comput Soc Bioinform Conf (2002) 1.25
Tools for loading MEDLINE into a local relational database. BMC Bioinformatics (2004) 1.23
A comparison study on algorithms of detecting long forms for short forms in biomedical text. BMC Bioinformatics (2007) 1.01
Identification of transcription factor contexts in literature using machine learning approaches. BMC Bioinformatics (2008) 0.96
Identification of key concepts in biomedical literature using a modified Markov heuristic. Bioinformatics (2003) 0.95
Enhancing performance of protein and gene name recognizers with filtering and integration strategies. J Biomed Inform (2004) 0.82
Overview of BioCreative II gene mention recognition. Genome Biol (2008) 5.67
FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. Nucleic Acids Res (2006) 5.60
Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
The gene normalization task in BioCreative III. BMC Bioinformatics (2011) 2.89
Introducing meta-services for biomedical information extraction. Genome Biol (2008) 2.78
Bayesian classification for data from the same unknown class. IEEE Trans Syst Man Cybern B Cybern (2002) 1.11
Automatic morphological subtyping reveals new roles of caspases in mitochondrial dynamics. PLoS Comput Biol (2011) 1.08
Discovery and characterization of medaka miRNA genes by next generation sequencing platform. BMC Genomics (2010) 1.07
Gene regulatory control in the sea urchin aboral ectoderm: spatial initiation, signaling inputs, and cell fate lockdown. Dev Biol (2012) 1.05
Identification of homologous microRNAs in 56 animal genomes. Genomics (2010) 1.01
Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online). BMC Bioinformatics (2007) 0.97
UMARS: Un-MAppable Reads Solution. BMC Bioinformatics (2011) 0.93
Gene expression-based chemical genomics identifies potential therapeutic drugs in hepatocellular carcinoma. PLoS One (2011) 0.92
Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization. Bioinformatics (2007) 0.92
Sequence features involved in the mechanism of 3' splice junction wobbling. BMC Mol Biol (2010) 0.91
High expression stability of microtubule affinity regulating kinase 3 (MARK3) makes it a reliable reference gene. IUBMB Life (2010) 0.90
The integrin alpha2beta1 agonist, aggretin, promotes proliferation and migration of VSMC through NF-kB translocation and PDGF production. Br J Pharmacol (2009) 0.89
A ν-support vector regression based approach for predicting imputation quality. BMC Proc (2012) 0.88
Interrogation of rabbit miRNAs and their isomiRs. Genomics (2011) 0.88
Analysis of protein-protein interactions in cross-talk pathways reveals CRKL protein as a novel prognostic marker in hepatocellular carcinoma. Mol Cell Proteomics (2013) 0.84
Glucan Biosynthesis Protein G Is a Suitable Reference Gene in Escherichia coli K-12. ISRN Microbiol (2011) 0.84
MetaMirClust: discovery of miRNA cluster patterns using a data-mining approach. Genomics (2012) 0.84
Serine protease PRSS23 is upregulated by estrogen receptor α and associated with proliferation of breast cancer cells. PLoS One (2012) 0.83
Escherichia coli ATCC 8739 Adapts to the Presence of Sodium Chloride, Monosodium Glutamate, and Benzoic Acid after Extended Culture. ISRN Microbiol (2012) 0.82
Analysis of metabolic syndrome components in >15 000 african americans identifies pleiotropic variants: results from the population architecture using genomics and epidemiology study. Circ Cardiovasc Genet (2014) 0.81
Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization. BMC Bioinformatics (2011) 0.81
A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell images. Bioinformatics (2010) 0.81
Learning to predict expression efficacy of vectors in recombinant protein production. BMC Bioinformatics (2010) 0.80
From NPC therapeutic target identification to potential treatment strategy. Mol Cancer Ther (2010) 0.80
Using an in situ proximity ligation assay to systematically profile endogenous protein-protein interactions in a pathway network. J Proteome Res (2014) 0.76
Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores. Bioinformatics (2012) 0.75
Using computational strategies to predict potential drugs for nasopharyngeal carcinoma. Head Neck (2013) 0.75
Evaluation of buffer materials by associating engineering and sorption properties. Appl Radiat Isot (2004) 0.75
Tip size dependence of passive near-field microscopy. Opt Lett (2016) 0.75
Using the gene expression signature of scutebarbalactone VN isolated from Scutellaria barbata to elucidate its anticancer activities. Nat Prod Commun (2015) 0.75