Published in Environ Microbiol on December 04, 2009
Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer. Microb Cell Fact (2011) 2.22
Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa. Nat Rev Microbiol (2011) 2.15
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. J Bacteriol (2012) 1.71
Identification of genetic loci in Lactobacillus plantarum that modulate the immune response of dendritic cells using comparative genome hybridization. PLoS One (2010) 1.56
Extensive strain-level copy-number variation across human gut microbiome species. Cell (2015) 1.51
Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells. BMC Microbiol (2010) 1.51
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics (2012) 1.42
Comparative genomic and functional analysis of 100 Lactobacillus rhamnosus strains and their comparison with strain GG. PLoS Genet (2013) 1.21
Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity. PLoS One (2013) 1.18
Complete genome sequence of the probiotic Lactobacillus plantarum strain ZJ316. Genome Announc (2013) 1.17
Phylogenomic reconstruction of lactic acid bacteria: an update. BMC Evol Biol (2011) 1.13
Interactions in the microbiome: communities of organisms and communities of genes. FEMS Microbiol Rev (2013) 1.05
Role of DUOX in gut inflammation: lessons from Drosophila model of gut-microbiota interactions. Front Cell Infect Microbiol (2014) 1.03
PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains. BMC Genomics (2012) 1.02
Genome sequence of the naturally plasmid-free Lactobacillus plantarum strain NC8 (CCUG 61730). J Bacteriol (2012) 0.98
Comparative genomics of Lactobacillus sakei with emphasis on strains from meat. Mol Genet Genomics (2011) 0.98
Modulation of Lactobacillus plantarum gastrointestinal robustness by fermentation conditions enables identification of bacterial robustness markers. PLoS One (2012) 0.94
Draft Genome Sequence of Lactobacillus plantarum Strain WJL, a Drosophila Gut Symbiont. Genome Announc (2013) 0.92
Is the pan-genome also a pan-selectome? F1000Res (2012) 0.91
Transcriptomes reveal genetic signatures underlying physiological variations imposed by different fermentation conditions in Lactobacillus plantarum. PLoS One (2012) 0.90
Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis. Appl Environ Microbiol (2010) 0.87
The major autolysin Acm2 from Lactobacillus plantarum undergoes cytoplasmic O-glycosylation. J Bacteriol (2011) 0.87
Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut. Bioeng Bugs (2012) 0.86
Variation in stress resistance patterns among stx genotypes and genetic lineages of shiga toxin-producing Escherichia coli O157. Appl Environ Microbiol (2012) 0.85
Explaining microbial phenotypes on a genomic scale: GWAS for microbes. Brief Funct Genomics (2013) 0.85
Diversity in robustness of Lactococcus lactis strains during heat stress, oxidative stress, and spray drying stress. Appl Environ Microbiol (2013) 0.85
Catabolic flexibility of mammalian-associated lactobacilli. Microb Cell Fact (2013) 0.83
Congruent strain specific intestinal persistence of Lactobacillus plantarum in an intestine-mimicking in vitro system and in human volunteers. PLoS One (2012) 0.83
Draft Genome Sequence of Lactobacillus plantarum CMPG5300, a Human Vaginal Isolate. Genome Announc (2014) 0.80
GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum. J Bacteriol (2014) 0.80
Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling. Appl Environ Microbiol (2015) 0.80
Effects of the peptide pheromone plantaricin A and cocultivation with Lactobacillus sanfranciscensis DPPMA174 on the exoproteome and the adhesion capacity of Lactobacillus plantarum DC400. Appl Environ Microbiol (2013) 0.79
High-resolution characterization of the human microbiome. Transl Res (2016) 0.78
Comparative genome-based identification of a cell wall-anchored protein from Lactobacillus plantarum increases adhesion of Lactococcus lactis to human epithelial cells. Sci Rep (2015) 0.77
Use of multilocus sequence typing to infer genetic diversity and population structure of Lactobacillus plantarum isolates from different sources. BMC Microbiol (2015) 0.77
Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity. PLoS One (2016) 0.77
Lactic Acid Bacteria in Durum Wheat Flour Are Endophytic Components of the Plant during Its Entire Life Cycle. Appl Environ Microbiol (2015) 0.77
Transcriptional reprogramming and phenotypic switching associated with the adaptation of Lactobacillus plantarum C2 to plant niches. Sci Rep (2016) 0.76
Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine. Genome Announc (2015) 0.76
Transcriptome signatures of class I and III stress response deregulation in Lactobacillus plantarum reveal pleiotropic adaptation. Microb Cell Fact (2013) 0.76
Quantifying Variability in Growth and Thermal Inactivation Kinetics of Lactobacillus plantarum. Appl Environ Microbiol (2016) 0.76
Draft Genome Sequences of Lactobacillus plantarum Strain 90sk and Lactobacillus brevis Strain 15f: Focusing on Neurotransmitter Genes. Genome Announc (2015) 0.75
Draft genome sequence of Lactobacillus plantarum strains E2C2 and E2C5 isolated from human stool culture. Stand Genomic Sci (2017) 0.75
Comparative genomic analysis of Lactobacillus plantarum ZJ316 reveals its genetic adaptation and potential probiotic profiles. J Zhejiang Univ Sci B (2016) 0.75
Draft Whole-Genome Sequences of Three Lactobacillus plantarum Food Isolates. Genome Announc (2016) 0.75
Draft Genome Sequence of Lactobacillus plantarum WLPL04, Isolated from Human Breast Milk. Genome Announc (2015) 0.75
Comparative Proteogenomics and Metabolic Profiling Identify an Inducible Operon Involved in Inulin Utilization in Lactobacillus plantarum Strains. Appl Environ Microbiol (2016) 0.75
Carbohydrate metabolism in Oenococcus oeni: a genomic insight. BMC Genomics (2016) 0.75
Food borne bacterial models for detection of benzo[a]pyrene-DNA adducts formation using RAPD-PCR. Microb Biotechnol (2016) 0.75
Resequencing of the Lactobacillus plantarum Strain WJL Genome. Genome Announc (2015) 0.75
Draft Genome Sequence of Lactobacillus plantarum Strain IPLA 88. Genome Announc (2013) 0.75
Phenotypic and genotypic characterization of some lactic Acid bacteria isolated from bee pollen: a preliminary study. Biosci Microbiota Food Health (2014) 0.75
Analysis of metabolomic profile of fermented Orostachys japonicus A. Berger by capillary electrophoresis time of flight mass spectrometry. PLoS One (2017) 0.75
Enterotypes of the human gut microbiome. Nature (2011) 24.36
Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci U S A (2003) 8.40
Richness of human gut microbiome correlates with metabolic markers. Nature (2013) 6.93
Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol (2009) 3.57
Visualization for genomics: the Microbial Genome Viewer. Bioinformatics (2004) 3.52
10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis. Appl Microbiol Biotechnol (2005) 2.80
New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics. FEMS Microbiol Rev (2005) 2.58
Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance. Proc Natl Acad Sci U S A (2009) 2.29
Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer. Microb Cell Fact (2011) 2.22
Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. J Biol Chem (2006) 2.17
Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa. Nat Rev Microbiol (2011) 2.15
Towards understanding molecular modes of probiotic action. Curr Opin Biotechnol (2006) 2.14
Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes. Proc Natl Acad Sci U S A (2010) 2.10
Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J Bacteriol (2004) 2.06
Exploring Lactobacillus plantarum genome diversity by using microarrays. J Bacteriol (2005) 2.02
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? Brief Bioinform (2012) 2.00
The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms. Proc Natl Acad Sci U S A (2007) 1.94
Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek (2002) 1.90
Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium. J Bacteriol (2010) 1.90
Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum. J Bacteriol (2005) 1.85
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. ISME J (2012) 1.81
Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Appl Environ Microbiol (2011) 1.76
Genome-wide detection and analysis of cell wall-bound proteins with LPxTG-like sorting motifs. J Bacteriol (2005) 1.75
Isolation of RNA from bacterial samples of the human gastrointestinal tract. Nat Protoc (2006) 1.75
Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. J Bacteriol (2012) 1.71
Cre-lox-based system for multiple gene deletions and selectable-marker removal in Lactobacillus plantarum. Appl Environ Microbiol (2006) 1.70
Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment. Appl Environ Microbiol (2005) 1.69
Glutathione protects Lactococcus lactis against oxidative stress. Appl Environ Microbiol (2003) 1.68
Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria. BMC Genomics (2006) 1.65
An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence. J Bacteriol (2005) 1.61
Cell to cell communication by autoinducing peptides in gram-positive bacteria. Antonie Van Leeuwenhoek (2002) 1.61
Regulation of human epithelial tight junction proteins by Lactobacillus plantarum in vivo and protective effects on the epithelial barrier. Am J Physiol Gastrointest Liver Physiol (2010) 1.60
High temporal and inter-individual variation detected in the human ileal microbiota. Environ Microbiol (2010) 1.59
Identification of genetic loci in Lactobacillus plantarum that modulate the immune response of dendritic cells using comparative genome hybridization. PLoS One (2010) 1.56
Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways. Proc Natl Acad Sci U S A (2010) 1.56
Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche. Appl Environ Microbiol (2007) 1.55
Natural diversity and adaptive responses of Lactococcus lactis. Curr Opin Biotechnol (2006) 1.54
Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells. BMC Microbiol (2010) 1.51
Identification of prebiotic fructooligosaccharide metabolism in Lactobacillus plantarum WCFS1 through microarrays. Appl Environ Microbiol (2007) 1.48
Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting. Appl Environ Microbiol (2007) 1.45
Isolation of DNA from bacterial samples of the human gastrointestinal tract. Nat Protoc (2006) 1.43
Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria. Microbiology (2006) 1.42
Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution. Genome Res (2011) 1.41
Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis. Microbiology (2002) 1.40
Increased production of folate by metabolic engineering of Lactococcus lactis. Appl Environ Microbiol (2003) 1.37
Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice. Mucosal Immunol (2012) 1.36
Genetic characterization of the bile salt response in Lactobacillus plantarum and analysis of responsive promoters in vitro and in situ in the gastrointestinal tract. J Bacteriol (2004) 1.36
Microbiota conservation and BMI signatures in adult monozygotic twins. ISME J (2012) 1.34
Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model. ISME J (2012) 1.33
Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice. ISME J (2010) 1.33
Spatial and temporal expression of Lactobacillus plantarum genes in the gastrointestinal tracts of mice. Appl Environ Microbiol (2006) 1.31
Regulation of intestinal homeostasis and immunity with probiotic lactobacilli. Trends Immunol (2013) 1.31
The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. Microbiology (2004) 1.31
Arabinoxylans and inulin differentially modulate the mucosal and luminal gut microbiota and mucin-degradation in humanized rats. Environ Microbiol (2011) 1.31
Multifactorial diversity sustains microbial community stability. ISME J (2013) 1.29
The prophage sequences of Lactobacillus plantarum strain WCFS1. Virology (2003) 1.28
Characterization and functional analysis of the poxB gene, which encodes pyruvate oxidase in Lactobacillus plantarum. J Bacteriol (2004) 1.27
Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features. PLoS One (2011) 1.25
Unraveling microbial interactions in food fermentations: from classical to genomics approaches. Appl Environ Microbiol (2008) 1.25
A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1. BMC Genomics (2008) 1.23
Saturated fat stimulates obesity and hepatic steatosis and affects gut microbiota composition by an enhanced overflow of dietary fat to the distal intestine. Am J Physiol Gastrointest Liver Physiol (2012) 1.23
Effect of different NADH oxidase levels on glucose metabolism by Lactococcus lactis: kinetics of intracellular metabolite pools determined by in vivo nuclear magnetic resonance. Appl Environ Microbiol (2002) 1.21
Regulation of the metC-cysK operon, involved in sulfur metabolism in Lactococcus lactis. J Bacteriol (2002) 1.21
IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis. J Bacteriol (2003) 1.20
The impact of probiotics and prebiotics on the immune system. Nat Rev Immunol (2012) 1.19
Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays. Microb Biotechnol (2011) 1.19
Genome data mining of lactic acid bacteria: the impact of bioinformatics. Curr Opin Biotechnol (2004) 1.19
Development and characterization of a subtilin-regulated expression system in Bacillus subtilis: strict control of gene expression by addition of subtilin. Appl Environ Microbiol (2005) 1.19
Use of the alr gene as a food-grade selection marker in lactic acid bacteria. Appl Environ Microbiol (2002) 1.18
Major role of NAD-dependent lactate dehydrogenases in aerobic lactate utilization in Lactobacillus plantarum during early stationary phase. J Bacteriol (2004) 1.18
Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity. PLoS One (2013) 1.18
Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed. Appl Environ Microbiol (2010) 1.18
Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1. Microb Cell Fact (2007) 1.17
Microbial community development in a dynamic gut model is reproducible, colon region specific, and selective for Bacteroidetes and Clostridium cluster IX. Appl Environ Microbiol (2010) 1.15
Lifestyle of Lactobacillus plantarum in the mouse caecum. Environ Microbiol (2009) 1.15