PubRank

Konstantinos Mavromatis

Author PubWeight™ 270.06‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 2009 17.90
2 A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature 2009 15.06
3 The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res 2007 13.81
4 IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res 2012 12.03
5 The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2007 11.24
6 The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2009 9.98
7 The integrated microbial genomes (IMG) system. Nucleic Acids Res 2006 7.34
8 IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res 2007 7.18
9 IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res 2013 6.14
10 The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res 2009 6.07
11 The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes. Stand Genomic Sci 2009 5.50
12 A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev 2008 4.33
13 One bacterial cell, one complete genome. PLoS One 2010 3.69
14 Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biol 2009 3.63
15 IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res 2013 2.99
16 IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res 2011 2.76
17 An experimental metagenome data management and analysis system. Bioinformatics 2006 2.71
18 Complete genome sequence of Meiothermus ruber type strain (21). Stand Genomic Sci 2010 1.96
19 Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Stand Genomic Sci 2009 1.82
20 Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX. J Bacteriol 2007 1.67
21 Improving microbial genome annotations in an integrated database context. PLoS One 2013 1.48
22 Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255). Stand Genomic Sci 2009 1.34
23 Complete genome sequence of Spirosoma linguale type strain (1). Stand Genomic Sci 2010 1.32
24 Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium. J Bacteriol 2009 1.25
25 Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419. Stand Genomic Sci 2010 1.24
26 Annotation of metagenome short reads using proxygenes. Bioinformatics 2008 1.24
27 Complete genome sequence of "Enterobacter lignolyticus" SCF1. Stand Genomic Sci 2011 1.24
28 Peptidoglycan N-acetylglucosamine deacetylases from Bacillus cereus, highly conserved proteins in Bacillus anthracis. J Biol Chem 2005 1.22
29 Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Stand Genomic Sci 2010 1.21
30 IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project. PLoS One 2012 1.20
31 Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae. J Bacteriol 2011 1.19
32 Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Stand Genomic Sci 2010 1.15
33 Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Stand Genomic Sci 2009 1.14
34 Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Stand Genomic Sci 2010 1.10
35 Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Stand Genomic Sci 2011 1.08
36 Complete genome sequence of Saccharomonospora viridis type strain (P101). Stand Genomic Sci 2009 1.07
37 Complete genome sequence of Haloterrigena turkmenica type strain (4k). Stand Genomic Sci 2010 1.06
38 Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). Stand Genomic Sci 2011 1.06
39 Microbial co-habitation and lateral gene transfer: what transposases can tell us. Genome Biol 2009 1.05
40 Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Stand Genomic Sci 2012 1.05
41 Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations. Stand Genomic Sci 2013 1.04
42 Complete Genome Sequence of Clostridium clariflavum DSM 19732. Stand Genomic Sci 2012 1.02
43 Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. Stand Genomic Sci 2010 1.02
44 Complete genome sequence of Desulfobulbus propionicus type strain (1pr3). Stand Genomic Sci 2011 1.01
45 Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Stand Genomic Sci 2009 1.00
46 Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). Stand Genomic Sci 2010 1.00
47 Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Stand Genomic Sci 2009 1.00
48 Complete genome sequence of Cellulophaga lytica type strain (LIM-21). Stand Genomic Sci 2011 0.99
49 Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Stand Genomic Sci 2010 0.99
50 Complete genome sequence of Arcobacter nitrofigilis type strain (CI). Stand Genomic Sci 2010 0.99
51 Complete genome sequence of Planctomyces limnophilus type strain (Mü 290). Stand Genomic Sci 2010 0.98
52 Complete genome sequence of Anaerococcus prevotii type strain (PC1). Stand Genomic Sci 2009 0.97
53 Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinformatics 2009 0.97
54 Complete genome sequence of Paludibacter propionicigenes type strain (WB4). Stand Genomic Sci 2011 0.97
55 Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Stand Genomic Sci 2011 0.96
56 Complete genome sequence of Thermosphaera aggregans type strain (M11TL). Stand Genomic Sci 2010 0.96
57 Complete genome sequence of Gordonia bronchialis type strain (3410). Stand Genomic Sci 2010 0.96
58 Complete genome sequence of Isosphaera pallida type strain (IS1B). Stand Genomic Sci 2011 0.96
59 Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum. Stand Genomic Sci 2010 0.95
60 Complete genome sequence of Sulfurospirillum deleyianum type strain (5175). Stand Genomic Sci 2010 0.95
61 Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Stand Genomic Sci 2009 0.95
62 Complete genome sequence of Actinosynnema mirum type strain (101). Stand Genomic Sci 2009 0.95
63 Complete genome sequence of Haliangium ochraceum type strain (SMP-2). Stand Genomic Sci 2010 0.94
64 Complete genome sequence of Thermobispora bispora type strain (R51). Stand Genomic Sci 2010 0.94
65 The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments. Archaea 2010 0.94
66 Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). Stand Genomic Sci 2009 0.93
67 Complete genome sequence of Treponema succinifaciens type strain (6091). Stand Genomic Sci 2011 0.93
68 Complete genome sequence of Geodermatophilus obscurus type strain (G-20). Stand Genomic Sci 2010 0.92
69 Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Stand Genomic Sci 2009 0.92
70 High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes. J Bacteriol 2012 0.91
71 Complete genome sequence of Cellulophaga algicola type strain (IC166). Stand Genomic Sci 2011 0.91
72 Complete genome sequence of Leadbetterella byssophila type strain (4M15). Stand Genomic Sci 2011 0.90
73 Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228). Stand Genomic Sci 2010 0.90
74 Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509). Stand Genomic Sci 2010 0.90
75 Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113). Stand Genomic Sci 2011 0.90
76 Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)). Stand Genomic Sci 2012 0.90
77 Complete genome sequence of Olsenella uli type strain (VPI D76D-27C). Stand Genomic Sci 2010 0.90
78 Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T. J Bacteriol 2012 0.90
79 Complete genome sequence of Truepera radiovictrix type strain (RQ-24). Stand Genomic Sci 2011 0.90
80 Complete genome sequence of Desulfarculus baarsii type strain (2st14). Stand Genomic Sci 2010 0.89
81 Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). Stand Genomic Sci 2011 0.89
82 Complete genome sequence of Halogeometricum borinquense type strain (PR3). Stand Genomic Sci 2009 0.89
83 Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Stand Genomic Sci 2013 0.89
84 Complete genome sequence of Veillonella parvula type strain (Te3). Stand Genomic Sci 2010 0.88
85 Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24). Stand Genomic Sci 2010 0.88
86 Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022). Stand Genomic Sci 2010 0.88
87 Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). Stand Genomic Sci 2011 0.88
88 Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA). Stand Genomic Sci 2010 0.87
89 Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). Stand Genomic Sci 2010 0.87
90 Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)). Stand Genomic Sci 2012 0.87
91 Complete genome sequence of Archaeoglobus profundus type strain (AV18). Stand Genomic Sci 2010 0.87
92 Complete genome sequence of Streptobacillus moniliformis type strain (9901). Stand Genomic Sci 2009 0.87
93 Complete genome sequence of Cellulomonas flavigena type strain (134). Stand Genomic Sci 2010 0.86
94 Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Stand Genomic Sci 2009 0.86
95 Complete genome sequence of Marivirga tractuosa type strain (H-43). Stand Genomic Sci 2011 0.86
96 Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park. Appl Environ Microbiol 2013 0.86
97 Complete genome sequence of Thioalkalivibrio sp. K90mix. Stand Genomic Sci 2011 0.85
98 Complete genome sequence of Kangiella koreensis type strain (SW-125). Stand Genomic Sci 2009 0.85
99 Complete genome sequence of Nakamurella multipartita type strain (Y-104). Stand Genomic Sci 2010 0.85
100 Complete genome sequence of Brachyspira murdochii type strain (56-150). Stand Genomic Sci 2010 0.85
101 Complete genome sequence of Bacteroides salanitronis type strain (BL78). Stand Genomic Sci 2011 0.85
102 Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Stand Genomic Sci 2009 0.84
103 Complete genome sequence of Vulcanisaeta distributa type strain (IC-017). Stand Genomic Sci 2010 0.84
104 Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P). Stand Genomic Sci 2010 0.84
105 Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1). Stand Genomic Sci 2010 0.84
106 Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). Stand Genomic Sci 2010 0.84
107 Complete genome sequence of Haliscomenobacter hydrossis type strain (O). Stand Genomic Sci 2011 0.84
108 Complete genome sequence of Thermomonospora curvata type strain (B9). Stand Genomic Sci 2011 0.84
109 LmbE proteins from Bacillus cereus are de-N-acetylases with broad substrate specificity and are highly similar to proteins in Bacillus anthracis. FEBS J 2010 0.84
110 Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1). Stand Genomic Sci 2010 0.83
111 Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). Stand Genomic Sci 2010 0.83
112 Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300). Stand Genomic Sci 2010 0.83
113 Complete genome sequence of Ferrimonas balearica type strain (PAT). Stand Genomic Sci 2010 0.83
114 Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). Stand Genomic Sci 2011 0.82
115 Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron. Stand Genomic Sci 2013 0.82
116 Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand Genomic Sci 2009 0.82
117 Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)). Stand Genomic Sci 2012 0.82
118 Complete genome sequence of Acidaminococcus fermentans type strain (VR4). Stand Genomic Sci 2010 0.82
119 Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7. Stand Genomic Sci 2011 0.82
120 Complete genome sequence of Bacteroides helcogenes type strain (P 36-108). Stand Genomic Sci 2011 0.82
121 Complete genome sequence of Deinococcus maricopensis type strain (LB-34). Stand Genomic Sci 2011 0.82
122 Genome sequence of Stenotrophomonas maltophilia PML168, which displays Baeyer-Villiger monooxygenase activity. J Bacteriol 2012 0.82
123 Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460). Stand Genomic Sci 2010 0.82
124 Complete genome sequence of Weeksella virosa type strain (9751). Stand Genomic Sci 2011 0.81
125 Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)). Stand Genomic Sci 2012 0.81
126 Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)). Stand Genomic Sci 2012 0.81
127 Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)). Stand Genomic Sci 2010 0.81
128 Complete genome sequence of Thermocrinis albus type strain (HI 11/12). Stand Genomic Sci 2010 0.81
129 Complete genome sequence of Rhodospirillum rubrum type strain (S1). Stand Genomic Sci 2011 0.81
130 Complete genome sequence of Meiothermus silvanus type strain (VI-R2). Stand Genomic Sci 2010 0.81
131 Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1). Stand Genomic Sci 2010 0.80
132 Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). Stand Genomic Sci 2011 0.80
133 Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Stand Genomic Sci 2010 0.80
134 Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10). Stand Genomic Sci 2011 0.80
135 Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach. Nucleic Acids Res 2009 0.80
136 Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). Stand Genomic Sci 2011 0.80
137 Complete genome sequence of Tsukamurella paurometabola type strain (no. 33). Stand Genomic Sci 2011 0.80
138 Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288). Stand Genomic Sci 2010 0.79
139 Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). Stand Genomic Sci 2010 0.79
140 Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Stand Genomic Sci 2013 0.79
141 Complete genome sequence of Kribbella flavida type strain (IFO 14399). Stand Genomic Sci 2010 0.79
142 Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). Stand Genomic Sci 2009 0.79
143 Complete genome sequence of Oceanithermus profundus type strain (506). Stand Genomic Sci 2011 0.79
144 Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). Stand Genomic Sci 2011 0.79
145 Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). Stand Genomic Sci 2011 0.79
146 Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)). Stand Genomic Sci 2012 0.78
147 Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). Stand Genomic Sci 2011 0.78
148 Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1). Stand Genomic Sci 2011 0.78
149 Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). Stand Genomic Sci 2011 0.78
150 Complete genome sequence of Mahella australiensis type strain (50-1 BON). Stand Genomic Sci 2011 0.78
151 Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Stand Genomic Sci 2011 0.78
152 Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07). Stand Genomic Sci 2010 0.78
153 Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)). Stand Genomic Sci 2012 0.78
154 Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)). Stand Genomic Sci 2012 0.78
155 Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2). Stand Genomic Sci 2011 0.77
156 Complete genome sequence of Thermaerobacter marianensis type strain (7p75a). Stand Genomic Sci 2010 0.77
157 Draft Genome Sequence of Pseudomonas azotifigens Strain DSM 17556T (6H33bT), a Nitrogen Fixer Strain Isolated from a Compost Pile. Genome Announc 2013 0.77
158 Complete genome sequence of Conexibacter woesei type strain (ID131577). Stand Genomic Sci 2010 0.77
159 Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. Stand Genomic Sci 2012 0.77
160 Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift. Stand Genomic Sci 2013 0.77
161 Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). Stand Genomic Sci 2012 0.77
162 Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)). Stand Genomic Sci 2012 0.76
163 Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva. Stand Genomic Sci 2013 0.76
164 Complete genome sequence of Methanothermus fervidus type strain (V24S). Stand Genomic Sci 2010 0.76
165 Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)). Stand Genomic Sci 2011 0.76
166 Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Stand Genomic Sci 2010 0.76
167 High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)). Stand Genomic Sci 2013 0.76
168 Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Stand Genomic Sci 2011 0.75
169 Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)). Stand Genomic Sci 2012 0.75
170 Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)). Stand Genomic Sci 2013 0.75
171 Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Stand Genomic Sci 2010 0.75
172 Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20). Stand Genomic Sci 2011 0.75
173 Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). Stand Genomic Sci 2012 0.75
174 Complete genome sequence of Intrasporangium calvum type strain (7 KIP). Stand Genomic Sci 2010 0.75
175 Bacterial vaginosis and group B streptococcal colonization and preterm delivery in a low-risk population. Fetal Diagn Ther 2006 0.75