Cytoplasmic acidification and the benzoate transcriptome in Bacillus subtilis.

PubWeight™: 1.08‹?› | Rank: Top 10%

🔗 View Article (PMC 2788229)

Published in PLoS One on December 14, 2009

Authors

Ryan D Kitko1, Rebecca L Cleeton, Erin I Armentrout, Grace E Lee, Ken Noguchi, Melanie B Berkmen, Brian D Jones, Joan L Slonczewski

Author Affiliations

1: Department of Biology, Kenyon College, Gambier, Ohio, United States of America.

Articles citing this

Cytoplasmic pH response to acid stress in individual cells of Escherichia coli and Bacillus subtilis observed by fluorescence ratio imaging microscopy. Appl Environ Microbiol (2012) 1.07

Real-time attack of LL-37 on single Bacillus subtilis cells. Biochim Biophys Acta (2013) 1.05

Bacillithiol is a major buffer of the labile zinc pool in Bacillus subtilis. Mol Microbiol (2014) 0.99

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC. BMC Genomics (2012) 0.97

Osmolytes contribute to pH homeostasis of Escherichia coli. PLoS One (2010) 0.96

The transcription factor AlsR binds and regulates the promoter of the alsSD operon responsible for acetoin formation in Bacillus subtilis. J Bacteriol (2011) 0.94

Methylglyoxal resistance in Bacillus subtilis: contributions of bacillithiol-dependent and independent pathways. Mol Microbiol (2014) 0.91

The transcriptional response of Listeria monocytogenes during adaptation to growth on lactate and diacetate includes synergistic changes that increase fermentative acetoin production. Appl Environ Microbiol (2011) 0.90

Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds. FEMS Microbiol Ecol (2014) 0.87

NhaP1 is a K+(Na+)/H+ antiporter required for growth and internal pH homeostasis of Vibrio cholerae at low extracellular pH. Microbiology (2012) 0.84

Biophysical features of bacillithiol, the glutathione surrogate of Bacillus subtilis and other firmicutes. Chembiochem (2013) 0.83

Loss of FlhE in the flagellar Type III secretion system allows proton influx into Salmonella and Escherichia coli. Mol Microbiol (2012) 0.81

Identification of pOENI-1 and related plasmids in Oenococcus oeni strains performing the malolactic fermentation in wine. PLoS One (2012) 0.81

Functional gene arrays-based analysis of fecal microbiomes in patients with liver cirrhosis. BMC Genomics (2014) 0.81

Single-cell, time-resolved study of the effects of the antimicrobial peptide alamethicin on Bacillus subtilis. Biochim Biophys Acta (2016) 0.78

Acetylation Regulates Survival of Salmonella enterica Serovar Typhimurium under Acid Stress. Appl Environ Microbiol (2015) 0.77

Intracellular pH Response to Weak Acid Stress in Individual Vegetative Bacillus subtilis Cells. Appl Environ Microbiol (2016) 0.75

Articles cited by this

Java Treeview--extensible visualization of microarray data. Bioinformatics (2004) 24.12

FACS-optimized mutants of the green fluorescent protein (GFP). Gene (1996) 24.12

Open source clustering software. Bioinformatics (2004) 23.17

Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins. Nature (1998) 15.09

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data. J Cell Biochem Suppl (2001) 8.50

New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria. Appl Environ Microbiol (1998) 6.61

Molecular biology of microbial ureases. Microbiol Rev (1995) 6.31

Cytoplasmic pH mediates pH taxis and weak-acid repellent taxis of bacteria. J Bacteriol (1981) 3.89

Surviving the acid test: responses of gram-positive bacteria to low pH. Microbiol Mol Biol Rev (2003) 3.54

The steady-state counterclockwise/clockwise ratio of bacterial flagellar motors is regulated by protonmotive force. J Mol Biol (1980) 3.19

The effect of food preservatives on pH homeostasis in Escherichia coli. J Gen Microbiol (1984) 3.00

Genome-wide analysis of the general stress response in Bacillus subtilis. Mol Microbiol (2001) 2.98

Alkaline pH homeostasis in bacteria: new insights. Biochim Biophys Acta (2005) 2.64

pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J Bacteriol (2005) 2.60

A Novel Method for Continuous Determination of the Intracellular pH in Bacteria with the Internally Conjugated Fluorescent Probe 5 (and 6-)-Carboxyfluorescein Succinimidyl Ester. Appl Environ Microbiol (1996) 2.52

Effects of pH and repellent tactic stimuli on protein methylation levels in Escherichia coli. J Bacteriol (1982) 2.46

Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches. J Mol Biol (2002) 2.44

Proton chemical potential, proton electrical potential and bacterial motility. J Mol Biol (1980) 2.41

Identification of genes involved in utilization of acetate and acetoin in Bacillus subtilis. Mol Microbiol (1993) 2.40

Quantitative measurements of proton motive force and motility in Bacillus subtilis. J Bacteriol (1980) 2.38

Preservative agents in foods. Mode of action and microbial resistance mechanisms. Int J Food Microbiol (1999) 2.32

Ecology and genomics of Bacillus subtilis. Trends Microbiol (2008) 2.22

Escherichia coli glutamate- and arginine-dependent acid resistance systems increase internal pH and reverse transmembrane potential. J Bacteriol (2004) 2.14

Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol (1999) 2.14

Acid-adaptive genes of Helicobacter pylori. Infect Immun (2003) 2.04

pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry. J Bacteriol (2007) 2.00

OhrR is a repressor of ohrA, a key organic hydroperoxide resistance determinant in Bacillus subtilis. J Bacteriol (2001) 1.98

Role of bkdR, a transcriptional activator of the sigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis. J Bacteriol (1999) 1.94

Cytoplasmic pH measurement and homeostasis in bacteria and archaea. Adv Microb Physiol (2009) 1.90

Alkaline shock induces the Bacillus subtilis sigma(W) regulon. Mol Microbiol (2001) 1.88

Measurements of the pH within dormant and germinated bacterial spores. Proc Natl Acad Sci U S A (1980) 1.86

Acetate and formate stress: opposite responses in the proteome of Escherichia coli. J Bacteriol (2001) 1.82

Functional role of bacterial multidrug efflux pumps in microbial natural ecosystems. FEMS Microbiol Rev (2009) 1.79

Bacterial ureases: structure, regulation of expression and role in pathogenesis. Mol Microbiol (1993) 1.56

The Bacillus subtilis sigmaW anti-sigma factor RsiW is degraded by intramembrane proteolysis through YluC. Mol Microbiol (2004) 1.53

Roles of LysP and CadC in mediating the lysine requirement for acid induction of the Escherichia coli cad operon. J Bacteriol (1994) 1.49

Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12. BMC Microbiol (2006) 1.46

Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil. Appl Environ Microbiol (2005) 1.41

The wprA gene of Bacillus subtilis 168, expressed during exponential growth, encodes a cell-wall-associated protease. Microbiology (1996) 1.41

Altered pH and lysine signalling mutants of cadC, a gene encoding a membrane-bound transcriptional activator of the Escherichia coli cadBA operon. Mol Microbiol (1994) 1.40

Gene cloning, transcriptional analysis, purification, and characterization of phenolic acid decarboxylase from Bacillus subtilis. Appl Environ Microbiol (1998) 1.40

The chromosomal tetracycline resistance locus of Bacillus subtilis encodes a Na+/H+ antiporter that is physiologically important at elevated pH. J Biol Chem (1994) 1.38

The internal pH of the forespore compartment of Bacillus megaterium decreases by about 1 pH unit during sporulation. J Bacteriol (1994) 1.33

Proteins induced in Escherichia coli by benzoic acid. J Bacteriol (1997) 1.31

Evidence for simultaneous binding of dissimilar substrates by the Escherichia coli multidrug transporter MdfA. Biochemistry (2001) 1.22

Systematic sequencing of the 283 kb 210 degrees-232 degrees region of the Bacillus subtilis genome containing the skin element and many sporulation genes. Microbiology (1996) 1.19

The affymetrix GeneChip platform: an overview. Methods Enzymol (2006) 1.17

Effects of nonpolar mutations in each of the seven Bacillus subtilis mrp genes suggest complex interactions among the gene products in support of Na(+) and alkali but not cholate resistance. J Bacteriol (2000) 1.17

Rapid acid treatment of Escherichia coli: transcriptomic response and recovery. BMC Microbiol (2008) 1.17

Acid and base stress and transcriptomic responses in Bacillus subtilis. Appl Environ Microbiol (2008) 1.16

Inhibitory effects of lipophilic acids and related compounds on bacteria and mammalian cells. Antimicrob Agents Chemother (1975) 1.13

Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system. Eur J Biochem (1993) 1.13

Characterization of YqjM, an Old Yellow Enzyme homolog from Bacillus subtilis involved in the oxidative stress response. J Biol Chem (2003) 1.12

Acid stress in the food pathogen Bacillus cereus. J Appl Microbiol (2002) 1.12

The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid. Proteomics (2007) 1.05

Involvement of Clp protease activity in modulating the Bacillus subtilissigmaw stress response. Mol Microbiol (2006) 1.03

Phenolic acid-mediated regulation of the padC gene, encoding the phenolic acid decarboxylase of Bacillus subtilis. J Bacteriol (2008) 1.01

A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis. Mol Microbiol (2008) 1.01

Computational methods and evaluation of RNA stabilization reagents for genome-wide expression studies. J Microbiol Methods (2003) 1.00

Transcriptome analysis of sorbic acid-stressed Bacillus subtilis reveals a nutrient limitation response and indicates plasma membrane remodeling. J Bacteriol (2007) 0.96

Properties of the reversible nonoxidative vanillate/4-hydroxybenzoate decarboxylase from Bacillus subtilis. Can J Microbiol (2008) 0.92

Isolation and characterization of mutants of the Bacillus subtilis oligopeptide permease with altered specificity of oligopeptide transport. J Bacteriol (2003) 0.91

Determination of extracellular and intracellular pH of Bacillus subtilis suspension under CO2 treatment. Biotechnol Bioeng (2005) 0.89

Role of ureolytic activity in Bacillus cereus nitrogen metabolism and acid survival. Appl Environ Microbiol (2008) 0.88

pH-dependent activation of the alternative transcriptional factor sigmaB in Bacillus subtilis. FEMS Microbiol Lett (1998) 0.87

The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis. J Bacteriol (2008) 0.83

The effect of sorbic acid and esters of p-hydroxybenzoic acid on the protonmotive force in Escherichia coli membrane vesicles. J Gen Microbiol (1985) 0.83

A procedure for high-yield spore production by Bacillus subtilis. Biotechnol Prog (2005) 0.82

Acid tolerance response is low-pH and late-stationary growth phase inducible in Bacillus cereus TZ415. Int J Food Microbiol (2002) 0.82

Green marker for colonies of Bacillus subtilis. Biosci Biotechnol Biochem (2001) 0.82

The acid tolerance response of Bacillus cereus ATCC14579 is dependent on culture pH, growth rate and intracellular pH. Arch Microbiol (2006) 0.81

Adaptive gene expression in Bacillus subtilis strains deleted for tetL. J Bacteriol (2006) 0.81

Exposure of Salmonella Enteritidis to chlorine or food preservatives decreases [corrected] susceptibility to antibiotics. FEMS Microbiol Lett (2003) 0.81

Transcription analysis of stx1, marA, and eaeA genes in Escherichia coli O157:H7 treated with sodium benzoate. J Food Prot (2008) 0.80

Survival of the acid-adapted Bacillus cereus in acidic environments. Int J Food Microbiol (2008) 0.78

Articles by these authors

DksA potentiates direct activation of amino acid promoters by ppGpp. Proc Natl Acad Sci U S A (2005) 2.94

pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12. J Bacteriol (2005) 2.60

rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase. Cell (2006) 2.50

pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli. J Bacteriol (2002) 2.31

pH of the cytoplasm and periplasm of Escherichia coli: rapid measurement by green fluorescent protein fluorimetry. J Bacteriol (2007) 2.00

Adjunct corticosteroids in children hospitalized with community-acquired pneumonia. Pediatrics (2011) 1.64

Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12. BMC Microbiol (2006) 1.46

Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. Proc Natl Acad Sci U S A (2007) 1.46

Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation. J Mol Biol (2008) 1.44

Ambulatory visit rates and antibiotic prescribing for children with pneumonia, 1994-2007. Pediatrics (2011) 1.37

pH-dependent catabolic protein expression during anaerobic growth of Escherichia coli K-12. J Bacteriol (2004) 1.21

Induction mortality and resource utilization in children treated for acute myeloid leukemia at free-standing pediatric hospitals in the United States. Cancer (2013) 1.18

Rapid acid treatment of Escherichia coli: transcriptomic response and recovery. BMC Microbiol (2008) 1.17

Acid and base stress and transcriptomic responses in Bacillus subtilis. Appl Environ Microbiol (2008) 1.16

Cytoplasmic pH response to acid stress in individual cells of Escherichia coli and Bacillus subtilis observed by fluorescence ratio imaging microscopy. Appl Environ Microbiol (2012) 1.07

Hydrogenase-3 contributes to anaerobic acid resistance of Escherichia coli. PLoS One (2010) 1.03

Efficient gene transfer in bacterial cell chains. MBio (2011) 0.99

Osmolytes contribute to pH homeostasis of Escherichia coli. PLoS One (2010) 0.96

Isolation, structure elucidation, and antitumor activity of spirohexenolides A and B. J Org Chem (2009) 0.96

Polyamine stress at high pH in Escherichia coli K-12. BMC Microbiol (2005) 0.94

A synthetic entry to pladienolide B and FD-895. Bioorg Med Chem Lett (2007) 0.92

Concerns about recently identified widespread antisense transcription in Escherichia coli. MBio (2010) 0.92

Health insurance and length of stay for children hospitalized with community-acquired pneumonia. J Hosp Med (2011) 0.89

Comparison of radiation treatment delivery for pancreatic cancer: Linac intensity-modulated radiotherapy versus helical tomotherapy. J Med Imaging Radiat Oncol (2012) 0.87

A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli. PLoS One (2011) 0.87

Structure of FD-895 revealed through total synthesis. Org Lett (2012) 0.86

The amino terminus of the herpes simplex virus 1 protein Vhs mediates membrane association and tegument incorporation. J Virol (2006) 0.86

Responsiveness of a Xenopus laevis cell line to the aryl hydrocarbon receptor ligands 6-formylindolo[3,2-b]carbazole (FICZ) and 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). Chem Biol Interact (2010) 0.86

Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution. Biol Direct (2006) 0.86

Phosphatase and tensin homolog regulates the pluripotent state and lineage fate choice in human embryonic stem cells. Stem Cells (2011) 0.85

Relative bioavailability and bioaccessibility and speciation of arsenic in contaminated soils. Environ Health Perspect (2011) 0.83

Spirohexenolide A targets human macrophage migration inhibitory factor (hMIF). J Nat Prod (2013) 0.83

An experimental and theoretical study of alkali metal cation interactions with cysteine. J Phys Chem B (2010) 0.78

Escherichia coli K-12 survives anaerobic exposure at pH 2 without RpoS, Gad, or hydrogenases, but shows sensitivity to autoclaved broth products. PLoS One (2013) 0.77

Spirodi(iminohydantoin) products from oxidation of 2'-deoxyguanosine in the presence of NH4Cl in nucleoside and oligodeoxynucleotide contexts. J Org Chem (2015) 0.75

A 7-year-old boy with abdominal pain, fever, and rash. Pediatr Ann (2013) 0.75

New technology-based functional assessment tools should avoid the weaknesses and proliferation of manual functional assessments. J Clin Epidemiol (2013) 0.75