Published in Plant Mol Biol on April 01, 2010
Coordinated histone modifications are associated with gene expression variation within and between species. Genome Res (2011) 1.49
Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome. Genome Biol (2013) 1.30
The progeny of Arabidopsis thaliana plants exposed to salt exhibit changes in DNA methylation, histone modifications and gene expression. PLoS One (2012) 1.28
DNA methylation and histone modifications regulate de novo shoot regeneration in Arabidopsis by modulating WUSCHEL expression and auxin signaling. PLoS Genet (2011) 1.11
Genomic distribution of H3K9me2 and DNA methylation in a maize genome. PLoS One (2014) 1.03
HISTONE DEACETYLASE19 interacts with HSL1 and participates in the repression of seed maturation genes in Arabidopsis seedlings. Plant Cell (2013) 1.02
The epigenetic machinery controlling transgenerational systemic acquired resistance. Plant Signal Behav (2012) 1.02
Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus. Plant Cell (2011) 1.02
Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots. J Exp Bot (2013) 0.95
High-throughput approaches for plant epigenomic studies. Curr Opin Plant Biol (2011) 0.95
Inhibition of histone deacetylase impacts cancer stem cells and induces epithelial-mesenchyme transition of head and neck cancer. PLoS One (2013) 0.92
Vernalization-mediated VIN3 Induction Overcomes the LIKE-HETEROCHROMATIN PROTEIN1/POLYCOMB REPRESSION COMPLEX2-mediated epigenetic repression. Plant Physiol (2010) 0.89
Role of NPR1 and KYP in long-lasting induced resistance by β-aminobutyric acid. Front Plant Sci (2014) 0.89
NFκB mediates cisplatin resistance through histone modifications in head and neck squamous cell carcinoma (HNSCC). FEBS Open Bio (2013) 0.89
Histone deacetylase complex1 expression level titrates plant growth and abscisic acid sensitivity in Arabidopsis. Plant Cell (2013) 0.88
Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis. Plant Physiol (2013) 0.87
A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis. Plant Physiol (2015) 0.85
A Genome-Wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence. Plant Physiol (2015) 0.83
Protocol: Chromatin immunoprecipitation (ChIP) methodology to investigate histone modifications in two model diatom species. Plant Methods (2012) 0.82
SEEDSTICK is a master regulator of development and metabolism in the Arabidopsis seed coat. PLoS Genet (2014) 0.81
A role for CHROMOMETHYLASE3 in mediating transposon and euchromatin silencing during egg cell reprogramming in Arabidopsis. Plant Signal Behav (2010) 0.80
Genome-wide view of natural antisense transcripts in Arabidopsis thaliana. DNA Res (2015) 0.79
Chilling-Mediated DNA Methylation Changes during Dormancy and Its Release Reveal the Importance of Epigenetic Regulation during Winter Dormancy in Apple (Malus x domestica Borkh.). PLoS One (2016) 0.79
Genome architecture: from linear organisation of chromatin to the 3D assembly in the nucleus. Chromosoma (2015) 0.78
High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns in Arabidopsis and rice. Epigenetics (2015) 0.77
Genome-Wide Mapping of Targets of Maize Histone Deacetylase HDA101 Reveals Its Function and Regulatory Mechanism during Seed Development. Plant Cell (2016) 0.77
SUPRESSOR OF FRIGIDA (SUF4) supports gamete fusion via regulating Arabidopsis EC1 gene expression. Plant Physiol (2016) 0.76
Characterization of histone modifications associated with DNA damage repair genes upon exposure to gamma rays in Arabidopsis seedlings. J Radiat Res (2016) 0.76
Parallel action of AtDRB2 and RdDM in the control of transposable element expression. BMC Plant Biol (2015) 0.76
Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem. BMC Plant Biol (2015) 0.76
A Modified Reverse One-Hybrid Screen Identifies Transcriptional Activation Domains in PHYTOCHROME-INTERACTING FACTOR 3. Front Plant Sci (2016) 0.76
An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum. Genome Biol (2015) 0.76
Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression. Proc Natl Acad Sci U S A (2017) 0.75
A novel translocation event leads to a recombinant stable chromosome with interrupted centromeric domains in rice. Chromosoma (2013) 0.75
Knockdown of WHIRLY1 Affects Drought Stress-Induced Leaf Senescence and Histone Modifications of the Senescence-Associated Gene HvS40. Plants (Basel) (2016) 0.75
Epigenetic Modifications and Accumulation of DNA Double-Strand Breaks in Oral Lichen Planus Lesions Presenting Poor Response to Therapy. Medicine (Baltimore) (2015) 0.75
Histone Acetylation Modifications Affect Tissue-Dependent Expression of Poplar Homologs of C4 Photosynthetic Enzyme Genes. Front Plant Sci (2017) 0.75
POWERDRESS and HDA9 interact and promote histone H3 deacetylation at specific genomic sites in Arabidopsis. Proc Natl Acad Sci U S A (2016) 0.75
The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 subunit LHP1 function in concert to regulate the transcription of stress-responsive genes. Plant Cell (2016) 0.75
Live imaging of H3K9 acetylation in plant cells. Sci Rep (2017) 0.75
Multilevel Regulation of Abiotic Stress Responses in Plants. Front Plant Sci (2017) 0.75
The quest for epigenetic regulation underlying unisexual flower development in Cucumis melo. Epigenetics Chromatin (2017) 0.75
Light-regulated transcriptional networks in higher plants. Nat Rev Genet (2007) 4.82
Coordinated regulation of Arabidopsis thaliana development by light and gibberellins. Nature (2008) 4.71
DATF: a database of Arabidopsis transcription factors. Bioinformatics (2005) 4.34
Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell (2007) 4.13
The COP9 signalosome. Annu Rev Cell Dev Biol (2003) 3.25
COP1 - from plant photomorphogenesis to mammalian tumorigenesis. Trends Cell Biol (2005) 3.01
The COP1-SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity. Genes Dev (2003) 2.97
Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Dev Cell (2010) 2.96
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell (2010) 2.92
Phosphate starvation triggers distinct alterations of genome expression in Arabidopsis roots and leaves. Plant Physiol (2003) 2.75
Genome-wide transcription analyses in rice using tiling microarrays. Nat Genet (2005) 2.39
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell (2009) 2.39
COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability. Mol Cell (2008) 2.34
Light regulates COP1-mediated degradation of HFR1, a transcription factor essential for light signaling in Arabidopsis. Plant Cell (2005) 2.31
PlantTFDB: a comprehensive plant transcription factor database. Nucleic Acids Res (2007) 2.17
A molecular framework of light-controlled phytohormone action in Arabidopsis. Curr Biol (2012) 2.02
Structural basis for the specific recognition of methylated histone H3 lysine 4 by the WD-40 protein WDR5. Mol Cell (2006) 2.02
The photomorphogenic repressors COP1 and DET1: 20 years later. Trends Plant Sci (2012) 2.02
Plant hormone signaling lightens up: integrators of light and hormones. Curr Opin Plant Biol (2010) 1.95
An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. Plant J (2005) 1.93
Arabidopsis CULLIN4 Forms an E3 Ubiquitin Ligase with RBX1 and the CDD Complex in Mediating Light Control of Development. Plant Cell (2006) 1.92
Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell (2012) 1.91
Biochemical characterization of Arabidopsis complexes containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA proteins in light control of plant development. Plant Cell (2008) 1.85
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant Cell (2008) 1.85
Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell (2005) 1.84
Organ-specific expression of Arabidopsis genome during development. Plant Physiol (2005) 1.83
The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses. Plant Cell (2003) 1.80
Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Plant Physiol (2004) 1.79
Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Plant Cell (2008) 1.77
Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Mol Biol (2007) 1.76
Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock. Mol Cell (2011) 1.75
Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes. Genes Dev (2004) 1.72
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. Genome Res (2005) 1.71
Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1. EMBO J (2002) 1.66
Arabidopsis CULLIN4-damaged DNA binding protein 1 interacts with CONSTITUTIVELY PHOTOMORPHOGENIC1-SUPPRESSOR OF PHYA complexes to regulate photomorphogenesis and flowering time. Plant Cell (2010) 1.66
Vorinostat for treatment of cutaneous manifestations of advanced primary cutaneous T-cell lymphoma. Clin Cancer Res (2007) 1.62
The diverse roles of ubiquitin and the 26S proteasome in the life of plants. Nat Rev Genet (2003) 1.61
Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation. Plant Cell (2004) 1.60
Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8). Plant J (2002) 1.59
Gibberellins modulate light signaling pathways to prevent Arabidopsis seedling de-etiolation in darkness. Plant J (2007) 1.58
From seed to seed: the role of photoreceptors in Arabidopsis development. Dev Biol (2003) 1.54
An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol Biol (2005) 1.53
Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulation. Plant J (2010) 1.53
Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis. Plant Cell (2002) 1.52
COP9 signalosome subunit 8 is essential for peripheral T cell homeostasis and antigen receptor-induced entry into the cell cycle from quiescence. Nat Immunol (2007) 1.48
Biochemical insights on degradation of Arabidopsis DELLA proteins gained from a cell-free assay system. Plant Cell (2009) 1.48
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information. Bioinformatics (2011) 1.45
Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Nat Cell Biol (2011) 1.45
Rice 2020: a call for an international coordinated effort in rice functional genomics. Mol Plant (2008) 1.45
A genome-wide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids. Mol Plant (2008) 1.44
Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis. Plant Cell (2009) 1.43
The COP9 signalosome interacts with SCF UFO and participates in Arabidopsis flower development. Plant Cell (2003) 1.43
Arabidopsis FHY3 and HY5 positively mediate induction of COP1 transcription in response to photomorphogenic UV-B light. Plant Cell (2012) 1.41
Global identification and characterization of transcriptionally active regions in the rice genome. PLoS One (2007) 1.41
Role of the MPN subunits in COP9 signalosome assembly and activity, and their regulatory interaction with Arabidopsis Cullin3-based E3 ligases. Plant Cell (2007) 1.40
Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo. Plant Cell (2005) 1.39
Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development. Development (2003) 1.38
A novel eIF5A complex functions as a regulator of p53 and p53-dependent apoptosis. J Biol Chem (2004) 1.37
A high-density SNP genotyping array for rice biology and molecular breeding. Mol Plant (2013) 1.36
2-(4,5-Diphenyl-2-p-tolyl-1H-imidazol-1-yl)-3-phenyl-propan-1-ol. Acta Crystallogr Sect E Struct Rep Online (2012) 1.35
Mammalian DET1 regulates Cul4A activity and forms stable complexes with E2 ubiquitin-conjugating enzymes. Mol Cell Biol (2007) 1.34
The Reference Genome of the Halophytic Plant Eutrema salsugineum. Front Plant Sci (2013) 1.34
Dissecting the phytochrome A-dependent signaling network in higher plants. Trends Plant Sci (2003) 1.32
Disruption of phytoene desaturase gene results in albino and dwarf phenotypes in Arabidopsis by impairing chlorophyll, carotenoid, and gibberellin biosynthesis. Cell Res (2007) 1.32
NMPP: a user-customized NimbleGen microarray data processing pipeline. Bioinformatics (2006) 1.30
EXPO, an exocyst-positive organelle distinct from multivesicular endosomes and autophagosomes, mediates cytosol to cell wall exocytosis in Arabidopsis and tobacco cells. Plant Cell (2010) 1.30
Arabidopsis COP1/SPA1 complex and FHY1/FHY3 associate with distinct phosphorylated forms of phytochrome A in balancing light signaling. Mol Cell (2008) 1.29
DWA1 and DWA2, two Arabidopsis DWD protein components of CUL4-based E3 ligases, act together as negative regulators in ABA signal transduction. Plant Cell (2010) 1.28
A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development. Plant Physiol (2003) 1.27
Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development. Plant Cell (2011) 1.27
Arabidopsis CSN5B interacts with VTC1 and modulates ascorbic acid synthesis. Plant Cell (2013) 1.25
A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. J Exp Bot (2006) 1.23
Characterization of the last subunit of the Arabidopsis COP9 signalosome: implications for the overall structure and origin of the complex. Plant Cell (2003) 1.23
Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. Plant Cell (2008) 1.23
Targeted degradation of abscisic acid receptors is mediated by the ubiquitin ligase substrate adaptor DDA1 in Arabidopsis. Plant Cell (2014) 1.23
Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling. Plant Cell (2010) 1.22
The Arabidopsis chaperone J3 regulates the plasma membrane H+-ATPase through interaction with the PKS5 kinase. Plant Cell (2010) 1.18
A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem. Plant Cell (2005) 1.18
F-box protein DOR functions as a novel inhibitory factor for abscisic acid-induced stomatal closure under drought stress in Arabidopsis,. Plant Physiol (2008) 1.18
A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription. Plant Cell (2005) 1.18
Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Front Plant Sci (2012) 1.17
Geminiviruses subvert ubiquitination by altering CSN-mediated derubylation of SCF E3 ligase complexes and inhibit jasmonate signaling in Arabidopsis thaliana. Plant Cell (2011) 1.16
Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.). Theor Appl Genet (2011) 1.16
ABD1 is an Arabidopsis DCAF substrate receptor for CUL4-DDB1-based E3 ligases that acts as a negative regulator of abscisic acid signaling. Plant Cell (2014) 1.15
Evidence for a physical association of the COP9 signalosome, the proteasome, and specific SCF E3 ligases in vivo. Curr Biol (2003) 1.15
PlantMetabolomics.org: a web portal for plant metabolomics experiments. Plant Physiol (2010) 1.15
2-[4,5-Diphenyl-2-(pyridin-2-yl)-1H-imidazol-1-yl]-3-phenyl-propan-1-ol. Acta Crystallogr Sect E Struct Rep Online (2012) 1.13