PubRank

Anders Krogh

Author PubWeight™ 141.27‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A combined transmembrane topology and signal peptide prediction method. J Mol Biol 2004 15.77
2 JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res 2007 8.79
3 Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 2010 7.51
4 Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells. J Biol Chem 2007 7.46
5 Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci 2003 6.85
6 EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics 2003 6.63
7 The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet 2009 6.02
8 Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server. Nucleic Acids Res 2007 5.29
9 An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 2011 4.84
10 Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinformatics 2005 4.25
11 Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature 2013 3.45
12 Reliability measures for membrane protein topology prediction algorithms. J Mol Biol 2003 3.13
13 An HMM posterior decoder for sequence feature prediction that includes homology information. Bioinformatics 2005 3.05
14 A code for transcription initiation in mammalian genomes. Genome Res 2007 2.71
15 Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE. Genome Res 2008 2.60
16 A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. Bioinformatics 2002 2.23
17 microRNA-101 is a potent inhibitor of autophagy. EMBO J 2011 2.00
18 Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization. Proc Natl Acad Sci U S A 2014 1.91
19 Molecular composition of IMP1 ribonucleoprotein granules. Mol Cell Proteomics 2007 1.80
20 Signatures of RNA binding proteins globally coupled to effective microRNA target sites. Genome Res 2010 1.75
21 The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res 2011 1.70
22 MicroRNA-145 targets YES and STAT1 in colon cancer cells. PLoS One 2010 1.64
23 Improving ancient DNA read mapping against modern reference genomes. BMC Genomics 2012 1.59
24 Sampling realistic protein conformations using local structural bias. PLoS Comput Biol 2006 1.56
25 A generative, probabilistic model of local protein structure. Proc Natl Acad Sci U S A 2008 1.50
26 miR-449 inhibits cell proliferation and is down-regulated in gastric cancer. Mol Cancer 2011 1.46
27 Asap: a framework for over-representation statistics for transcription factor binding sites. PLoS One 2008 1.46
28 Computational evidence for hundreds of non-conserved plant microRNAs. BMC Genomics 2005 1.43
29 A hidden Markov model approach for determining expression from genomic tiling micro arrays. BMC Bioinformatics 2006 1.40
30 Mammalian tissues defective in nonsense-mediated mRNA decay display highly aberrant splicing patterns. Genome Biol 2012 1.34
31 Genome analysis reveals insights into physiology and longevity of the Brandt's bat Myotis brandtii. Nat Commun 2013 1.31
32 PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res 2006 1.29
33 MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action. RNA 2011 1.26
34 RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box. J Mol Biol 2003 1.25
35 miRMaid: a unified programming interface for microRNA data resources. BMC Bioinformatics 2010 1.20
36 Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants. PLoS Comput Biol 2007 1.16
37 MicroRNA-143 down-regulates Hexokinase 2 in colon cancer cells. BMC Cancer 2012 1.16
38 Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome. Genome Res 2013 1.12
39 Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing. BMC Med Genomics 2009 1.10
40 MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing. Bioinformatics 2007 1.10
41 Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients. Blood 2013 1.09
42 Bias of purine stretches in sequenced chromosomes. Comput Chem 2002 1.05
43 Discovery of regulatory elements is improved by a discriminatory approach. PLoS Comput Biol 2009 1.04
44 Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nat Commun 2013 0.95
45 An evolutionary method for learning HMM structure: prediction of protein secondary structure. BMC Bioinformatics 2007 0.95
46 microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-κB by targeting CARD10 and COPS8 in gastric cancer. Mol Cancer 2012 0.95
47 Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs. Microb Ecol 2015 0.93
48 Bayesian transcriptome assembly. Genome Biol 2014 0.92
49 Loss of miR-10a activates lpo and collaborates with activated Wnt signaling in inducing intestinal neoplasia in female mice. PLoS Genet 2013 0.91
50 CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinformatics 2009 0.91
51 Automatic generation of gene finders for eukaryotic species. BMC Bioinformatics 2006 0.90
52 Modeling promoter grammars with evolving hidden Markov models. Bioinformatics 2008 0.90
53 Teaching computers to fold proteins. Phys Rev E Stat Nonlin Soft Matter Phys 2004 0.88
54 Long- and short-term selective forces on malaria parasite genomes. PLoS Genet 2010 0.86
55 Training HMM structure with genetic algorithm for biological sequence analysis. Bioinformatics 2004 0.86
56 A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies. Hum Mutat 2013 0.84
57 BayesMD: flexible biological modeling for motif discovery. J Comput Biol 2008 0.83
58 Novel overlapping coding sequences in Chlamydia trachomatis. FEMS Microbiol Lett 2006 0.82
59 Alterations in polyadenylation and its implications for endocrine disease. Front Endocrinol (Lausanne) 2013 0.81
60 Hidden Markov Models for prediction of protein features. Methods Mol Biol 2008 0.79
61 On the accuracy of short read mapping. Methods Mol Biol 2013 0.77
62 SNPest: a probabilistic graphical model for estimating genotypes. BMC Res Notes 2014 0.76
63 Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nat Commun 2015 0.75
64 Erratum. Eur Heart J Qual Care Clin Outcomes 2017 0.75