PubRank

Irena Roterman

Author PubWeight™ 35.28‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Hydrophobic collapse in (in silico) protein folding. Comput Biol Chem 2006 1.16
2 Fuzzy-oil-drop hydrophobic force field--a model to represent late-stage folding (in silico) of lysozyme. J Biomol Struct Dyn 2006 1.12
3 Gauss-function-Based model of hydrophobicity density in proteins. In Silico Biol 2006 1.10
4 Prediction of functional sites based on the fuzzy oil drop model. PLoS Comput Biol 2007 1.08
5 Hydrophobic collapse in late-stage folding (in silico) of bovine pancreatic trypsin inhibitor. Biochimie 2006 1.03
6 Is the protein folding an aim-oriented process? Human haemoglobin as example. Int J Bioinform Res Appl 2007 0.98
7 Ligation site in proteins recognized in silico. Bioinformation 2006 0.91
8 The structure and protein binding of amyloid-specific dye reagents. Acta Biochim Pol 2003 0.91
9 Conformational subspace in simulation of early-stage protein folding. Proteins 2004 0.90
10 Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction. J Comput Aided Mol Des 2010 0.88
11 The indirect generation of long-distance structural changes in antibodies upon their binding to antigen. Chem Biol Drug Des 2006 0.88
12 Albumin binds self-assembling dyes as specific polymolecular ligands. Int J Biol Macromol 2006 0.88
13 Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants. J Mol Model 2011 0.86
14 Localization of ligand binding site in proteins identified in silico. J Mol Model 2007 0.84
15 Hypothetical in silico model of the early-stage intermediate in protein folding. J Mol Model 2013 0.84
16 Early-stage folding in proteins (in silico) sequence-to-structure relation. J Biomed Biotechnol 2005 0.84
17 Application of the fuzzy-oil-drop model to membrane protein simulation. Proteins 2009 0.83
18 Search for structural similarity in proteins. Bioinformatics 2003 0.82
19 An approach to understand the complexation of supramolecular dye Congo red with immunoglobulin L chain lambda. Biopolymers 2005 0.81
20 "Fuzzy oil drop" model applied to individual small proteins built of 70 amino acids. J Mol Model 2010 0.80
21 The use of rigid, fibrillar Congo red nanostructures for scaffolding protein assemblies and inducing the formation of amyloid-like arrangement of molecules. Chem Biol Drug Des 2007 0.80
22 Local and long-range structural effects caused by the removal of the N-terminal polypeptide fragment from immunoglobulin L chain lambda. Biopolymers 2003 0.79
23 Sequence-structure-function relation characterized in silico. In Silico Biol 2006 0.78
24 The increased flexibility of CDR loops generated in antibodies by Congo red complexation favors antigen binding. J Biomol Struct Dyn 2006 0.78
25 Influence of the electric field on supramolecular structure and properties of amyloid-specific reagent Congo red. Eur Biophys J 2011 0.78
26 Functional characteristics of small proteins (70 amino acid residues) forming protein-nucleic acid complexes. J Biomol Struct Dyn 2009 0.77
27 Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction. Proteins 2005 0.77
28 In silico structural study of random amino acid sequence proteins not present in nature. Chem Biodivers 2009 0.77
29 Force-field parametrization and molecular dynamics simulations of Congo red. J Comput Aided Mol Des 2004 0.77
30 Conservative secondary structure motifs already present in early-stage folding (in silico) as found in serpines family. J Theor Biol 2007 0.77
31 Instability of monoclonal myeloma protein may be identified as susceptibility to penetration and binding by newly synthesized Congo red derivatives. Biochimie 2004 0.77
32 SPI--structure predictability index for protein sequences. In Silico Biol 2004 0.76
33 The structural abnormality of myeloma immunoglobulins tested by Congo red binding. Med Sci Monit 2003 0.76
34 Protein distorsion-derived mechanism of signal discrimination in monocytes revealed using Congo red to stain activated cells. Folia Histochem Cytobiol 2003 0.76
35 In vivo accumulation of self-assembling dye Congo red in an area marked by specific immune complexes: possible relevance to chemotherapy. Folia Histochem Cytobiol 2004 0.76
36 Never born proteins as a test case for ab initio protein structures prediction. Bioinformation 2008 0.75
37 The use of supramolecular structures as protein ligands. J Mol Model 2013 0.75
38 Recognition of protein complexation based on hydrophobicity distribution. Bioinformation 2009 0.75
39 "Fuzzy oil drop" model verified positively. Bioinformation 2011 0.75
40 Chaperonin structure: the large multi-subunit protein complex. Int J Mol Sci 2009 0.75
41 Statistical dictionaries for hypothetical in silico model of the early-stage intermediate in protein folding. J Comput Aided Mol Des 2015 0.75
42 Internal force field in proteins seen by divergence entropy. Bioinformation 2011 0.75
43 A tabular approach to the sequence-to-structure relation in proteins (tetrapeptide representation) for de novo protein design. Med Sci Monit 2006 0.75
44 Hydrophobic core formation in protein complex of cathepsin. J Biomol Struct Dyn 2013 0.75
45 The use of the Congo red-related dye DBACR to recognize the heavy chain-derived abnormality of myeloma immunoglobulins. Arch Immunol Ther Exp (Warsz) 2006 0.75
46 Tandemly repeated trinucleotides - comparative analysis. Acta Biochim Pol 2006 0.75
47 Serum albumin complexation of acetylsalicylic acid metabolites. Curr Drug Metab 2009 0.75