Published in BMC Genomics on January 21, 2010
Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Rep (2015) 1.65
The Raine syndrome protein FAM20C is a Golgi kinase that phosphorylates bio-mineralization proteins. PLoS One (2012) 1.54
The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Mol Biol Evol (2013) 1.06
Vitamin D: calcium and bone homeostasis during evolution. Bonekey Rep (2014) 0.98
Identification of uterine ion transporters for mineralisation precursors of the avian eggshell. BMC Physiol (2012) 0.93
Drosophila eggshell production: identification of new genes and coordination by Pxt. PLoS One (2011) 0.93
Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process. BMC Genomics (2014) 0.92
Identification and characterisation of the BPI/LBP/PLUNC-like gene repertoire in chickens reveals the absence of a LBP gene. Dev Comp Immunol (2010) 0.86
QTL mapping of egg albumen quality in egg layers. Genet Sel Evol (2013) 0.83
Passive maternal exposure to environmental microbes selectively modulates the innate defences of chicken egg white by increasing some of its antibacterial activities. BMC Microbiol (2013) 0.82
The sodium channel gene family is specifically expressed in hen uterus and associated with eggshell quality traits. BMC Genet (2013) 0.82
The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell. Proteome Sci (2013) 0.81
Genome-wide association study revealed a promising region and candidate genes for eggshell quality in an F2 resource population. BMC Genomics (2015) 0.79
Mating induces the expression of immune- and pH-regulatory genes in the utero-vaginal junction containing mucosal sperm-storage tubuli of hens. Reproduction (2015) 0.77
Uncovering genomic features and maternal origin of korean native chicken by whole genome sequencing. PLoS One (2014) 0.77
Quantitative Trait Locus and Genetical Genomics Analysis Identifies Putatively Causal Genes for Fecundity and Brooding in the Chicken. G3 (Bethesda) (2015) 0.76
Polymorphisms in Ion Transport Genes Are Associated with Eggshell Mechanical Property. PLoS One (2015) 0.76
Integrating transcriptome and genome re-sequencing data to identify key genes and mutations affecting chicken eggshell qualities. PLoS One (2015) 0.76
Single nucleotide variant discovery of highly inbred Leghorn and Fayoumi chicken breeds using pooled whole genome resequencing data reveals insights into phenotype differences. BMC Genomics (2016) 0.76
Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes. Proteome Sci (2015) 0.76
Microarray analysis of genes involved with shell strength in layer shell gland at the early stage of active calcification. Asian-Australas J Anim Sci (2013) 0.76
Genetic architecture dissection by genome-wide association analysis reveals avian eggshell ultrastructure traits. Sci Rep (2016) 0.75
Identifying specific proteins involved in eggshell membrane formation using gene expression analysis and bioinformatics. BMC Genomics (2015) 0.75
The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata). Proteome Sci (2015) 0.75
How Egg Case Proteins Can Protect Cuttlefish Offspring? PLoS One (2015) 0.75
Downregulation of ALAS1 by nicarbazin treatment underlies the reduced synthesis of protoporphyrin IX in shell gland of laying hens. Sci Rep (2017) 0.75
Reference gene selection for the shell gland of laying hens in response to time-points of eggshell formation and nicarbazin. PLoS One (2017) 0.75
Improved prediction of signal peptides: SignalP 3.0. J Mol Biol (2004) 48.40
Identifying biological themes within lists of genes with EASE. Genome Biol (2003) 31.72
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature (2004) 21.40
ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res (2003) 17.39
Dorsoventral patterning in Xenopus: inhibition of ventral signals by direct binding of chordin to BMP-4. Cell (1996) 3.91
Identification and characterization of podocalyxin--the major sialoprotein of the renal glomerular epithelial cell. J Cell Biol (1984) 3.91
Bone morphogenetic proteins, their antagonists, and the skeleton. Endocr Rev (2003) 3.85
Molluscan shell proteins: primary structure, origin, and evolution. Curr Top Dev Biol (2008) 2.30
BMPER, a novel endothelial cell precursor-derived protein, antagonizes bone morphogenetic protein signaling and endothelial cell differentiation. Mol Cell Biol (2003) 1.83
FAM20: an evolutionarily conserved family of secreted proteins expressed in hematopoietic cells. BMC Genomics (2005) 1.70
VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data. Bioinformatics (2004) 1.63
Importance of glycosidases in mammalian glycoprotein biosynthesis. Biochim Biophys Acta (1999) 1.61
TIMP-2: an endogenous inhibitor of angiogenesis. Trends Mol Med (2005) 1.55
Spatiotemporal expression patterns of slit and robo genes in the rat brain. J Comp Neurol (2002) 1.52
The chicken egg white proteome. Proteomics (2007) 1.48
Antimicrobial activities of heparin-binding peptides. Eur J Biochem (2004) 1.46
Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer. Proteomics (2006) 1.38
Human Crossveinless-2 is a novel inhibitor of bone morphogenetic proteins. Biochem Biophys Res Commun (2004) 1.33
Podocalyxin-like protein is an E-/L-selectin ligand on colon carcinoma cells: comparative biochemical properties of selectin ligands in host and tumor cells. Am J Physiol Cell Physiol (2008) 1.23
Expression of Patella vulgata orthologs of engrailed and dpp-BMP2/4 in adjacent domains during molluscan shell development suggests a conserved compartment boundary mechanism. Dev Biol (2002) 1.22
Expression Analysis Systematic Explorer (EASE) analysis reveals differential gene expression in permanent and transient focal stroke rat models. Brain Res (2006) 1.21
Specific expression of BMP2/4 ortholog in biomineralizing tissues of corals and action on mouse BMP receptor. Mar Biotechnol (NY) (2008) 1.11
Structure, function and biology of tissue factor pathway inhibitor-2. Thromb Haemost (2005) 1.10
Ovocalyxin-32, a novel chicken eggshell matrix protein. isolation, amino acid sequencing, cloning, and immunocytochemical localization. J Biol Chem (2001) 1.07
Cloning of ovocalyxin-36, a novel chicken eggshell protein related to lipopolysaccharide-binding proteins, bactericidal permeability-increasing proteins, and plunc family proteins. J Biol Chem (2006) 1.06
Identification and localization of lysozyme as a component of eggshell membranes and eggshell matrix. Matrix Biol (2000) 1.06
The origin of the Mullerian duct in chick and mouse. Dev Biol (2006) 1.05
Avian defensins. Vet Immunol Immunopathol (2008) 1.04
Proteomic analysis of the chicken egg vitelline membrane. Proteomics (2008) 1.04
Sequence profiles of immunoglobulin and immunoglobulin-like domains. J Mol Biol (1997) 1.03
Chicken egg yolk cytoplasmic proteome, mined via combinatorial peptide ligand libraries. J Chromatogr A (2008) 1.03
Phosphoproteins of the chicken eggshell calcified layer. Proteomics (2007) 1.02
The amino acid sequence of ovocleidin 17, a major protein of the avian eggshell calcified layer. Biochem Mol Biol Int (1999) 1.00
Exploring the chicken egg white proteome with combinatorial peptide ligand libraries. J Proteome Res (2008) 0.99
The chicken egg yolk plasma and granule proteomes. Proteomics (2008) 0.99
Eggshells are shaped by a precise spatio-temporal arrangement of sequentially deposited macromolecules. Matrix Biol (1997) 0.99
Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Physiol Genomics (2006) 0.96
Ovotransferrin is a matrix protein of the hen eggshell membranes and basal calcified layer. Connect Tissue Res (2001) 0.95
Molecular cloning and ultrastructural localization of the core protein of an eggshell matrix proteoglycan, ovocleidin-116. J Biol Chem (1999) 0.95
Flik, a chick follistatin-related gene, functions in gastrular dorsalisation/neural induction and in subsequent maintenance of midline Sonic hedgehog signalling. Dev Biol (1999) 0.95
A marriage of bone and nacre. Nature (1998) 0.94
Purification and immunochemistry of a soluble matrix protein of the chicken eggshell (ovocleidin 17). Calcif Tissue Int (1995) 0.92
Secretion pattern, ultrastructural localization and function of extracellular matrix molecules involved in eggshell formation. Matrix Biol (2001) 0.92
New hypotheses on the function of the avian shell gland derived from microarray analysis comparing tissue from juvenile and sexually mature hens. Gen Comp Endocrinol (2009) 0.91
Involvement of osteopontin in egg shell formation in the laying chicken. Matrix Biol (1995) 0.88
Functional genomics in chickens: development of integrated-systems microarrays for transcriptional profiling and discovery of regulatory pathways. Comp Funct Genomics (2004) 0.87
Isolation of a glycosylated form of the chicken eggshell protein ovocleidin and determination of the glycosylation site. Alternative glycosylation/phosphorylation at an N-glycosylation sequon. FEBS Lett (1999) 0.87
Dermatan sulfate proteoglycans from the mineralized matrix of the avian eggshell. Connect Tissue Res (1997) 0.87
Protein--protein recognition: juxtaposition of domain and interface cores in immunoglobulins and other sandwich-like proteins. J Mol Biol (2004) 0.87
Effects of age, egg-laying activity, and Salmonella-inoculation on the expressions of gallinacin mRNA in the vagina of the hen oviduct. J Reprod Dev (2005) 0.86
APP is required during an early phase of memory formation. Eur J Neurosci (2000) 0.86
Ovalbumin is a component of the chicken eggshell matrix. Connect Tissue Res (1995) 0.85
Disulfide-linked heterodimeric clusterin is a component of the chicken eggshell matrix and egg white. Matrix Biol (2003) 0.85
Calcium transport in strongly calcifying laying birds: mechanisms and regulation. Comp Biochem Physiol A Mol Integr Physiol (2008) 0.85
Structure and expression of mGDF, a new member of the transforming growth factor-beta superfamily in the bivalve mollusc Crassostrea gigas. Eur J Biochem (2000) 0.84
Lysosomal high molecular weight multienzyme complex. Cell Mol Biol Lett (2003) 0.84
Eggshell matrix proteins as defense mechanism of avian eggs. J Agric Food Chem (2003) 0.82
Osteopontin and calbindin gene expression in the eggshell gland as related to eggshell abnormalities. Poult Sci (2009) 0.81
Different inhibitors of plasmin differentially affect angiostatin production and angiogenesis. Eur J Pharmacol (2003) 0.79
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. Brief Bioinform (2012) 6.06
An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss. Curr Biol (2012) 2.04
Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling. PLoS Genet (2007) 1.24
Discovery and characterization of the first genuine avian leptin gene in the rock dove (Columba livia). Endocrinology (2014) 1.18
Avian beta-defensin nomenclature: a community proposed update. Immunol Lett (2007) 1.12
Amplification biases: possible differences among deviating gene expressions. BMC Genomics (2008) 1.08
Cloning of ovocalyxin-36, a novel chicken eggshell protein related to lipopolysaccharide-binding proteins, bactericidal permeability-increasing proteins, and plunc family proteins. J Biol Chem (2006) 1.06
Molecular evidence for a critical period in mural trophoblast development in bovine blastocysts. Dev Biol (2005) 1.06
Identification of QTL controlling meat quality traits in an F2 cross between two chicken lines selected for either low or high growth rate. BMC Genomics (2007) 1.04
The eggshell: structure, composition and mineralization. Front Biosci (Landmark Ed) (2012) 1.03
QTL for several metabolic traits map to loci controlling growth and body composition in an F2 intercross between high- and low-growth chicken lines. Physiol Genomics (2009) 1.01
Avian apolipoprotein A-V binds to LDL receptor gene family members. J Lipid Res (2007) 1.01
Mapping main, epistatic and sex-specific QTL for body composition in a chicken population divergently selected for low or high growth rate. BMC Genomics (2010) 0.99
Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Physiol Genomics (2006) 0.96
Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources. BMC Genomics (2011) 0.94
Heterogeneity of persistence of Salmonella enterica serotype Senftenberg strains could explain the emergence of this serotype in poultry flocks. PLoS One (2012) 0.94
Identification of uterine ion transporters for mineralisation precursors of the avian eggshell. BMC Physiol (2012) 0.93
Induced pluripotent stem cells derived from rabbits exhibit some characteristics of naïve pluripotency. Biol Open (2013) 0.93
Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process. BMC Genomics (2014) 0.92
Gene expression profiling during cellular differentiation in the embryonic pituitary gland using cDNA microarrays. Physiol Genomics (2006) 0.92
Effects of BDNF, T3, and corticosterone on expression of the hypothalamic obesity gene network in vivo and in vitro. Am J Physiol Regul Integr Comp Physiol (2009) 0.90
Isolation of ovocleidin-116 from chicken eggshells, correction of its amino acid sequence and identification of disulfide bonds and glycosylated Asn. Matrix Biol (2002) 0.90
Contribution to high-resolution mapping in pigs with 101 type I markers and progress in comparative map between humans and pigs. Mamm Genome (2003) 0.88
Transcriptional analysis of abdominal fat in genetically fat and lean chickens reveals adipokines, lipogenic genes and a link between hemostasis and leanness. BMC Genomics (2013) 0.88
Detection of a Cis [corrected] eQTL controlling BCMO1 gene expression leads to the identification of a QTG for chicken breast meat color. PLoS One (2011) 0.88
Purification and characterization of avian beta-defensin 11, an antimicrobial peptide of the hen egg. Antimicrob Agents Chemother (2010) 0.87
Gallin; an antimicrobial peptide member of a new avian defensin family, the ovodefensins, has been subject to recent gene duplication. BMC Immunol (2010) 0.86
Ovocalyxin-36 and other LBP/BPI/PLUNC-like proteins as molecular actors of the mechanisms of the avian egg natural defences. Biochem Soc Trans (2011) 0.85
Specialized microbial databases for inductive exploration of microbial genome sequences. BMC Genomics (2005) 0.85
Disulfide-linked heterodimeric clusterin is a component of the chicken eggshell matrix and egg white. Matrix Biol (2003) 0.85
Identification and characterization of the precursor of chicken matrix metalloprotease 2 (pro-MMP-2) in hen egg. J Agric Food Chem (2008) 0.85
Insulin immuno-neutralization in chicken: effects on insulin signaling and gene expression in liver and muscle. J Endocrinol (2008) 0.84
Gene expression profiling reveals new potential players of gonad differentiation in the chicken embryo. PLoS One (2011) 0.84
Ovalbumin-related protein X is a heparin-binding ov-serpin exhibiting antimicrobial activities. J Biol Chem (2013) 0.84
Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout. BMC Genomics (2012) 0.84
Molecular characterization of genomic activities at the onset of zygotic transcription in mammals. Biol Reprod (2002) 0.84
Duplicated Spot 14 genes in the chicken: characterization and identification of polymorphisms associated with abdominal fat traits. Gene (2004) 0.84
PhyleasProg: a user-oriented web server for wide evolutionary analyses. Nucleic Acids Res (2011) 0.84
Antimicrobial potential of egg yolk ovoinhibitor, a multidomain Kazal-like inhibitor of chicken egg. J Agric Food Chem (2011) 0.83
Passive maternal exposure to environmental microbes selectively modulates the innate defences of chicken egg white by increasing some of its antibacterial activities. BMC Microbiol (2013) 0.82
What makes an egg unique? Clues from evolutionary scenarios of egg-specific genes. Biol Reprod (2010) 0.82
Transcriptional and pathway analysis in the hypothalamus of newly hatched chicks during fasting and delayed feeding. BMC Genomics (2010) 0.82
Identification of differentially expressed genes in chickens differing in muscle glycogen content and meat quality. BMC Genomics (2011) 0.82
Identification of transcripts involved in meiosis and follicle formation during ovine ovary development. BMC Genomics (2008) 0.81
Antimicrobial proteins in chicken reproductive system. Biochem Biophys Res Commun (2005) 0.80
Regulation of bovine oocyte-specific transcripts during in vitro oocyte maturation and after maternal-embryonic transition analyzed using a transcriptomic approach. Mol Reprod Dev (2009) 0.80
Transcriptional profiling of hypothalamus during development of adiposity in genetically selected fat and lean chickens. Physiol Genomics (2010) 0.79
Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F2 intercross between fat and lean chicken lines. Genet Sel Evol (2013) 0.79
Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail. BMC Genomics (2012) 0.79
Development of an ELISA for quantifying lysozyme in hen egg white. J Agric Food Chem (2005) 0.78
Effect of embryonic development on the chicken egg yolk plasma proteome after 12 days of incubation. J Agric Food Chem (2014) 0.78
Glucocorticoid-induced changes in gene expression in embryonic anterior pituitary cells. Physiol Genomics (2013) 0.77
Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach. Gene (2012) 0.77
Recombinant eggshell ovocalyxin-32: expression, purification and biological activity of the glutathione S-transferase fusion protein. Comp Biochem Physiol B Biochem Mol Biol (2007) 0.77
Isolation and characterization of antimicrobial proteins and peptide from chicken liver. J Pept Sci (2007) 0.77
Regulation of ANKRD9 expression by lipid metabolic perturbations. BMB Rep (2009) 0.77
DNA-PKcs plays role in cancer metastasis through regulation of secreted proteins involved in migration and invasion. Cell Cycle (2015) 0.77
Systemic administration of lipopolysaccharide in laying hens stimulates antimicrobial properties of egg white against Staphylococcus aureus. Vet Immunol Immunopathol (2013) 0.77
Effect of temperature and time of storage on protein stability and anti-salmonella activity of egg white. J Food Prot (2010) 0.77
Gene array analysis of adrenal glands in broiler chickens following ACTH treatment. BMC Genomics (2009) 0.77
Three-dimensional NMR structure of Hen Egg Gallin (Chicken Ovodefensin) reveals a new variation of the β-defensin fold. J Biol Chem (2014) 0.76
Insulin immuno-neutralization in fed chickens: effects on liver and muscle transcriptome. Physiol Genomics (2012) 0.76
Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis. BMC Genomics (2012) 0.75
Correction: Design and Characterization of a 52K SNP Chip for Goats. PLoS One (2016) 0.75
Selection and characterization of recombinant dromedary antiovalbumin antibody fragments that do not cross-react with ovalbumin-related protein X: use for immunoaffinity. J Agric Food Chem (2012) 0.75