Koji Tsuda

Author PubWeight™ 20.85‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units. Eur J Hum Genet 2010 1.62
2 Selective integration of multiple biological data for supervised network inference. Bioinformatics 2005 1.28
3 Mining frequent stem patterns from unaligned RNA sequences. Bioinformatics 2006 1.16
4 Experimental design for efficient identification of gene regulatory networks using sparse Bayesian models. BMC Syst Biol 2007 1.15
5 SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. Bioinformatics 2006 1.12
6 The DICS repository: module-assisted analysis of disease-related gene lists. Bioinformatics 2009 1.00
7 Enumeration of condition-dependent dense modules in protein interaction networks. Bioinformatics 2009 0.98
8 Modeling splicing sites with pairwise correlations. Bioinformatics 2002 0.92
9 PoSSuM: a database of similar protein-ligand binding and putative pockets. Nucleic Acids Res 2011 0.91
10 Mining complex genotypic features for predicting HIV-1 drug resistance. Bioinformatics 2007 0.91
11 Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach. Bioinformatics 2009 0.91
12 Marginalized kernels for RNA sequence data analysis. Genome Inform 2002 0.89
13 Statistical significance of combinatorial regulations. Proc Natl Acad Sci U S A 2013 0.88
14 PDB-scale analysis of known and putative ligand-binding sites with structural sketches. Proteins 2011 0.88
15 SlideSort: all pairs similarity search for short reads. Bioinformatics 2010 0.88
16 Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data. Bioinformatics 2009 0.83
17 Mining significant substructure pairs for interpreting polypharmacology in drug-target network. PLoS One 2011 0.83
18 ROS-DET: robust detector of switching mechanisms in gene expression. Nucleic Acids Res 2011 0.82
19 Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism. BMC Bioinformatics 2010 0.78
20 Discovering combinatorial interactions in survival data. Bioinformatics 2013 0.76
21 Privacy-preserving search for chemical compound databases. BMC Bioinformatics 2015 0.75
22 Health checkup and telemedical intervention program for preventive medicine in developing countries: verification study. J Med Internet Res 2015 0.75
23 An in silico model for interpreting polypharmacology in drug-target networks. Methods Mol Biol 2013 0.75
24 On the performance of methods for finding a switching mechanism in gene expression. Genome Inform 2010 0.75