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1
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The genome of the cucumber, Cucumis sativus L.
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Nat Genet
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2009
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8.19
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2
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High-throughput illumina strand-specific RNA sequencing library preparation.
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Cold Spring Harb Protoc
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2011
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2.72
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3
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Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation.
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PLoS One
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2012
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2.70
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4
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A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters.
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Plant Methods
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2012
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2.46
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5
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Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.
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Nat Biotechnol
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2013
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2.43
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6
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ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development.
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Plant J
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2004
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2.42
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7
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The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.
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Nat Genet
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2012
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2.33
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8
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iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences.
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BMC Bioinformatics
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2011
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2.02
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9
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Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim.
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BMC Genomics
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2010
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2.01
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10
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Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
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BMC Genomics
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2010
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1.88
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11
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Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation.
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Plant Cell
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2011
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1.88
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12
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Draft genome of the kiwifruit Actinidia chinensis.
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Nat Commun
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2013
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1.72
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13
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Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes.
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PLoS One
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2008
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1.57
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14
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Impact of intestinal colonization and invasion on the Entamoeba histolytica transcriptome.
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Mol Biochem Parasitol
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2006
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1.55
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15
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Systems biology of tomato fruit development: combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions.
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Plant Physiol
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2011
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1.51
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16
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Plant MetGenMAP: an integrative analysis system for plant systems biology.
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Plant Physiol
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2009
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1.44
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17
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Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato.
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J Exp Bot
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2010
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1.42
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18
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Complete genome sequence of a new tobamovirus naturally infecting tomatoes in Mexico.
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Genome Announc
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2013
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1.41
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19
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Antagonistic basic helix-loop-helix/bZIP transcription factors form transcriptional modules that integrate light and reactive oxygen species signaling in Arabidopsis.
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Plant Cell
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2013
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1.35
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20
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A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity.
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Nat Genet
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2013
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1.34
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21
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Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation.
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Plant J
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2012
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1.33
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22
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Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles.
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BMC Genomics
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2011
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1.28
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23
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RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
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BMC Genomics
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2011
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1.27
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24
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Gene expression in developing watermelon fruit.
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BMC Genomics
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2008
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1.21
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25
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Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis.
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J Exp Bot
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2007
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1.21
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26
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Early blood profiles of virus infection in a monkey model for Lassa fever.
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J Virol
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2007
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1.20
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27
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Flavour compounds in tomato fruits: identification of loci and potential pathways affecting volatile composition.
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J Exp Bot
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2008
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1.20
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28
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Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum.
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Mol Genet Genomics
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2012
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1.19
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29
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Catalyzing plant science research with RNA-seq.
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Front Plant Sci
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2013
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1.19
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30
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Small RNAs in tomato fruit and leaf development.
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Biochim Biophys Acta
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2007
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1.18
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31
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The transcriptome of the baculovirus Autographa californica multiple nucleopolyhedrovirus in Trichoplusia ni cells.
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J Virol
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2013
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1.16
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32
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Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon.
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BMC Genomics
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2011
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1.13
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33
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Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress.
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Amino Acids
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2010
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1.11
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34
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Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress.
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BMC Genomics
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2013
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1.10
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35
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Genome-wide identification and analysis of grape aldehyde dehydrogenase (ALDH) gene superfamily.
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PLoS One
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2012
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1.09
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36
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Molecular and biological properties of tomato necrotic stunt virus and development of a sensitive real-time RT-PCR assay.
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Arch Virol
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2013
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1.09
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37
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Metabolism of soluble sugars in developing melon fruit: a global transcriptional view of the metabolic transition to sucrose accumulation.
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Plant Mol Biol
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2011
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1.08
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38
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Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.
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Plant J
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2011
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1.06
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39
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Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit.
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BMC Genomics
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2013
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1.03
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40
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Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model.
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Bioinformatics
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2008
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1.03
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41
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First complete genome sequence of an emerging cucumber green mottle mosaic virus isolate in north america.
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Genome Announc
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2015
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1.02
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42
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Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case.
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Proteomics
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2012
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1.01
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43
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Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity.
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Genome Biol
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2013
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1.01
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44
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Genomic organization, phylogenetic comparison and differential expression of the SBP-box family genes in grape.
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PLoS One
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2013
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1.00
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45
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Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening.
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BMC Plant Biol
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2010
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0.99
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46
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Integrative analysis of miRNA and mRNA profiles in response to ethylene in rose petals during flower opening.
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PLoS One
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2013
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0.96
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47
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Genome-wide identification and analysis of the TIFY gene family in grape.
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PLoS One
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2012
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0.95
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48
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Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening.
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Plant Cell
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2014
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0.94
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49
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Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development.
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J Exp Bot
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2013
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0.94
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50
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Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis.
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Plant Physiol
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2009
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0.92
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51
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An NAC transcription factor controls ethylene-regulated cell expansion in flower petals.
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Plant Physiol
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2013
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0.91
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52
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Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome.
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G3 (Bethesda)
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2011
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0.90
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53
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Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features.
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Genetics
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2008
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0.89
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54
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A 'golden' SNP in CmOr governs the fruit flesh color of melon (Cucumis melo).
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Plant J
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2015
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0.89
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55
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RadishBase: a database for genomics and genetics of radish.
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Plant Cell Physiol
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2012
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0.89
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56
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Catabolism of L-methionine in the formation of sulfur and other volatiles in melon (Cucumis melo L.) fruit.
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Plant J
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2013
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0.88
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57
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Genetic association of ETHYLENE-INSENSITIVE3-like sequence with the sex-determining M locus in cucumber (Cucumis sativus L.).
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Theor Appl Genet
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2008
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0.88
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58
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Stable transformation and reverse genetic analysis of Penium margaritaceum: a platform for studies of charophyte green algae, the immediate ancestors of land plants.
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Plant J
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2013
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0.87
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59
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Complete Genome Sequence of an Emerging Melon Necrotic Spot Virus Isolate Infecting Greenhouse Cucumber in North America.
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Genome Announc
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2015
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0.85
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60
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Regulatory control of high levels of carotenoid accumulation in potato tubers.
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Plant Cell Environ
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2011
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0.84
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61
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Root and shoot transcriptome analysis of two ecotypes of Noccaea caerulescens uncovers the role of NcNramp1 in Cd hyperaccumulation.
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Plant J
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2014
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0.84
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62
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Transcriptome profiling and methyl homeostasis of an Arabidopsis mutant deficient in S-adenosylhomocysteine hydrolase1 (SAHH1).
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Plant Mol Biol
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2012
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0.84
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63
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Transcriptomic analysis reveals tomato genes whose expression is induced specifically during effector-triggered immunity and identifies the Epk1 protein kinase which is required for the host response to three bacterial effector proteins.
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Genome Biol
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2014
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0.83
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64
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Blocking the QB-binding site of photosystem II by tenuazonic acid, a non-host-specific toxin of Alternaria alternata, activates singlet oxygen-mediated and EXECUTER-dependent signalling in Arabidopsis.
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Plant Cell Environ
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2014
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0.82
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65
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Complete genome sequence of an emerging genotype of tobacco streak virus in the United States.
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Genome Announc
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2014
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0.81
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66
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Molecular characterization and transcriptome analysis of orange head Chinese cabbage (Brassica rapa L. ssp. pekinensis).
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Planta
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2015
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0.81
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67
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Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis).
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BMC Plant Biol
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2011
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0.81
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68
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Complete genome sequence of a novel genotype of squash mosaic virus infecting squash in Spain.
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Genome Announc
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2015
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0.80
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69
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Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis.
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BMC Genomics
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2009
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0.80
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70
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Strand-specific RNA sequencing uncovers chloroplast ribonuclease functions.
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FEBS Lett
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2013
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0.79
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71
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Identification of Solanum habrochaites loci that quantitatively influence tomato fruit ripening-associated ethylene emissions.
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Theor Appl Genet
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2009
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0.79
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72
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Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information.
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BMC Bioinformatics
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2009
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0.78
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73
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Characterization of Erysiphe necator-responsive genes in Chinese Wild Vitis quinquangularis.
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Int J Mol Sci
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2012
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0.78
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74
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Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.).
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BMC Genomics
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2013
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0.77
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75
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Identification of genes differentially expressed in grapevine associated with resistance to Elsinoe ampelina through suppressive subtraction hybridization.
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Plant Physiol Biochem
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2012
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0.77
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76
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Acquired Resistance to Mefenoxam in Sensitive Isolates of Phytophthora infestans.
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Phytopathology
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2015
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0.77
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77
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Correction.
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Plant J
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2015
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0.75
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78
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WITHDRAWN: Small RNAs in tomato fruit and leaf development.
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Biochim Biophys Acta
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2007
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0.75
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