Ruy M Ribeiro

Author PubWeight™ 93.22‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Acute loss of intestinal CD4+ T cells is not predictive of simian immunodeficiency virus virulence. J Immunol 2007 3.24
2 Rapid emergence of protease inhibitor resistance in hepatitis C virus. Sci Transl Med 2010 2.82
3 Viral dynamics and response differences in HCV-infected African American and white patients treated with IFN and ribavirin. Hepatology 2003 2.50
4 Kinetics of hepatitis C virus reinfection after liver transplantation. Liver Transpl 2006 2.01
5 Triphasic decline of hepatitis C virus RNA during antiviral therapy. Hepatology 2007 2.00
6 CD8+ lymphocytes control viral replication in SIVmac239-infected rhesus macaques without decreasing the lifespan of productively infected cells. PLoS Pathog 2010 1.99
7 Coagulation biomarkers predict disease progression in SIV-infected nonhuman primates. Blood 2012 1.91
8 Modeling hepatitis C virus dynamics: liver regeneration and critical drug efficacy. J Theor Biol 2007 1.89
9 Cutting edge: Experimentally induced immune activation in natural hosts of simian immunodeficiency virus induces significant increases in viral replication and CD4+ T cell depletion. J Immunol 2008 1.82
10 Kinetics of virus-specific CD8+ T cells and the control of human immunodeficiency virus infection. J Virol 2004 1.77
11 Early ribavirin pharmacokinetics, HCV RNA and alanine aminotransferase kinetics in HIV/HCV co-infected patients during treatment with pegylated interferon and ribavirin. J Hepatol 2007 1.74
12 Pharmacodynamics of PEG-IFN alpha differentiate HIV/HCV coinfected sustained virological responders from nonresponders. Hepatology 2006 1.69
13 Impact of thymectomy on the peripheral T cell pool in rhesus macaques before and after infection with simian immunodeficiency virus. Eur J Immunol 2005 1.60
14 The level of monocyte turnover predicts disease progression in the macaque model of AIDS. Blood 2009 1.59
15 Division-linked differentiation can account for CD8+ T-cell phenotype in vivo. Eur J Immunol 2009 1.51
16 Modeling amantadine treatment of influenza A virus in vitro. J Theor Biol 2008 1.51
17 Simian immunodeficiency virus SIVagm dynamics in African green monkeys. J Virol 2008 1.49
18 Real time bayesian estimation of the epidemic potential of emerging infectious diseases. PLoS One 2008 1.46
19 Th-1-type cytotoxic CD8+ T-lymphocyte responses to simian immunodeficiency virus (SIV) are a consistent feature of natural SIV infection in sooty mangabeys. J Virol 2006 1.44
20 Modeling the within-host dynamics of HIV infection. BMC Biol 2013 1.29
21 Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing. PLoS Pathog 2012 1.28
22 Hepatitis C virus (HCV) and human immunodeficiency virus (HIV) dynamics during HCV treatment in HCV/HIV coinfection. J Infect Dis 2003 1.27
23 Use of laser capture microdissection to map hepatitis C virus-positive hepatocytes in human liver. Gastroenterology 2013 1.23
24 Influence of peak viral load on the extent of CD4+ T-cell depletion in simian HIV infection. J Acquir Immune Defic Syndr 2006 1.23
25 Modeling HCV kinetics under therapy using PK and PD information. Expert Opin Drug Metab Toxicol 2009 1.22
26 Mathematical modeling of subgenomic hepatitis C virus replication in Huh-7 cells. J Virol 2006 1.21
27 The role of cells refractory to productive infection in acute hepatitis B viral dynamics. Proc Natl Acad Sci U S A 2007 1.19
28 Modeling viral and drug kinetics: hepatitis C virus treatment with pegylated interferon alfa-2b. Semin Liver Dis 2003 1.18
29 Agent-based and phylogenetic analyses reveal how HIV-1 moves between risk groups: injecting drug users sustain the heterosexual epidemic in Latvia. Epidemics 2012 1.18
30 Kinetics of coinfection with influenza A virus and Streptococcus pneumoniae. PLoS Pathog 2013 1.16
31 Current estimates for HIV-1 production imply rapid viral clearance in lymphoid tissues. PLoS Comput Biol 2010 1.15
32 Dynamics of T- and B-lymphocyte turnover in a natural host of simian immunodeficiency virus. J Virol 2007 1.15
33 Early microbial translocation blockade reduces SIV-mediated inflammation and viral replication. J Clin Invest 2014 1.14
34 Modeling the long-term control of viremia in HIV-1 infected patients treated with antiretroviral therapy. Math Biosci 2004 1.14
35 Viral dynamics during primary simian immunodeficiency virus infection: effect of time-dependent virus infectivity. J Virol 2010 1.14
36 Understanding the mechanisms and limitations of immune control of HIV. Immunol Rev 2007 1.13
37 A mathematical model of hepatitis C virus dynamics in patients with high baseline viral loads or advanced liver disease. Gastroenterology 2009 1.11
38 Immunovirological analyses of chronically simian immunodeficiency virus SIVmnd-1- and SIVmnd-2-infected mandrills (Mandrillus sphinx). J Virol 2011 1.09
39 Effect of B-cell depletion on viral replication and clinical outcome of simian immunodeficiency virus infection in a natural host. J Virol 2009 1.09
40 Functional cure of SIVagm infection in rhesus macaques results in complete recovery of CD4+ T cells and is reverted by CD8+ cell depletion. PLoS Pathog 2011 1.08
41 Impact of early viral kinetics on T-cell reactivity during antiviral therapy in chronic hepatitis B. Antivir Ther 2007 1.08
42 Modeling the viral dynamics of influenza A virus infection. Crit Rev Immunol 2010 1.07
43 High-potency human immunodeficiency virus vaccination leads to delayed and reduced CD8+ T-cell expansion but improved virus control. J Virol 2005 1.05
44 Modeling complex decay profiles of hepatitis B virus during antiviral therapy. Hepatology 2009 1.05
45 Estimating the impact of vaccination on acute simian-human immunodeficiency virus/simian immunodeficiency virus infections. J Virol 2008 1.02
46 Effect of 1918 PB1-F2 expression on influenza A virus infection kinetics. PLoS Comput Biol 2011 1.02
47 Predicting the impact of a nonsterilizing vaccine against human immunodeficiency virus. J Virol 2004 1.01
48 A hepatitis C viral kinetic model that allows for time-varying drug effectiveness. Antivir Ther 2008 1.00
49 Dynamics of T cells and TCR excision circles differ after treatment of acute and chronic HIV infection. J Immunol 2002 0.99
50 The race between infection and immunity: how do pathogens set the pace? Trends Immunol 2009 0.98
51 Modelling deuterium labelling of lymphocytes with temporal and/or kinetic heterogeneity. J R Soc Interface 2012 0.97
52 Hepatitis B virus kinetics and mathematical modeling. Semin Liver Dis 2004 0.95
53 Virus dynamics and immune responses during treatment in patients coinfected with hepatitis C and HIV. J Acquir Immune Defic Syndr 2004 0.94
54 Kinetics of myeloid dendritic cell trafficking and activation: impact on progressive, nonprogressive and controlled SIV infections. PLoS Pathog 2013 0.93
55 Experimental depletion of CD8+ cells in acutely SIVagm-infected African Green Monkeys results in increased viral replication. Retrovirology 2010 0.93
56 Modeling the mechanisms of acute hepatitis B virus infection. J Theor Biol 2007 0.92
57 Hepatitis C virus genotype 1a NS5A pretreatment sequence variation and viral kinetics in African American and white patients. J Infect Dis 2005 0.91
58 Evolution of drug-resistant viral populations during interruption of antiretroviral therapy. J Virol 2011 0.89
59 The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data. Epidemics 2009 0.89
60 Effects of antibody on viral kinetics in simian/human immunodeficiency virus infection: implications for vaccination. J Virol 2004 0.89
61 Mathematical modeling of viral kinetics: a tool to understand and optimize therapy. Clin Liver Dis 2003 0.88
62 Modeling quasispecies and drug resistance in hepatitis C patients treated with a protease inhibitor. Bull Math Biol 2012 0.88
63 Mathematical modeling of HCV infection and treatment. Methods Mol Biol 2009 0.87
64 Mechanisms Underlying CD4+ Treg Immune Regulation in the Adult: From Experiments to Models. Front Immunol 2013 0.86
65 Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections. BMC Bioinformatics 2010 0.85
66 Mutagenic effects of ribavirin in vivo. J Hepatol 2005 0.83
67 Estimating drug efficacy and viral dynamic parameters: HIV and HCV. Stat Med 2008 0.83
68 Early HIV RNA decay during raltegravir-containing regimens exhibits two distinct subphases (1a and 1b). AIDS 2015 0.82
69 Viral dynamics of hepatitis B virus DNA in human immunodeficiency virus-1-hepatitis B virus coinfected individuals: similar effectiveness of lamivudine, tenofovir, or combination therapy. Hepatology 2009 0.82
70 The life span of ganglionic glia in murine sensory ganglia estimated by uptake of bromodeoxyuridine. Exp Neurol 2004 0.81
71 Human systems immunology: hypothesis-based modeling and unbiased data-driven approaches. Semin Immunol 2013 0.80
72 Accelerated immunodeficiency by anti-CCR5 treatment in HIV infection. PLoS Comput Biol 2009 0.79
73 Kinetics of major histocompatibility class I antigen presentation in acute infection. J Immunol 2009 0.78
74 Hepatitis B virus viral dynamics: effects of drug dose and baseline alanine aminotransferase. J Hepatol 2002 0.77
75 The fate of CD4+ T cells under tolerance-inducing stimulation: a modeling perspective. Immunol Cell Biol 2013 0.76
76 Quantifying the activity of anti-HIV treatment in silico. Nat Med 2012 0.75
77 The effect of early versus delayed challenge after vaccination in controlling SHIV 89.6P infection. Virology 2008 0.75