PubRank

Shyam Prabhakar

Author PubWeight™ 38.32‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006 10.60
2 Ultraconservation identifies a small subset of extremely constrained developmental enhancers. Nat Genet 2008 3.55
3 Integrative model of genomic factors for determining binding site selection by estrogen receptor-α. Mol Syst Biol 2010 2.04
4 Runx1-mediated hematopoietic stem-cell emergence is controlled by a Gata/Ets/SCL-regulated enhancer. Blood 2007 1.82
5 MLL fusion proteins preferentially regulate a subset of wild-type MLL target genes in the leukemic genome. Blood 2011 1.74
6 Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences. Proc Natl Acad Sci U S A 2005 1.68
7 The DNA sequence and comparative analysis of human chromosome 5. Nature 2004 1.62
8 Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A. Proc Natl Acad Sci U S A 2005 1.52
9 Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny. Hum Mol Genet 2005 1.49
10 In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures. Dev Cell 2013 1.43
11 The sequence and analysis of duplication-rich human chromosome 16. Nature 2004 1.38
12 Ncoa3 functions as an essential Esrrb coactivator to sustain embryonic stem cell self-renewal and reprogramming. Genes Dev 2012 1.34
13 Uniform, optimal signal processing of mapped deep-sequencing data. Nat Biotechnol 2013 1.17
14 Deciphering the Sox-Oct partner code by quantitative cooperativity measurements. Nucleic Acids Res 2012 1.11
15 Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons. Genome Biol 2007 1.08
16 Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-beta effectors. Nucleic Acids Res 2010 1.06
17 Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers. Genome Res 2013 0.97
18 Primate-specific evolution of an LDLR enhancer. Genome Biol 2006 0.94
19 TherMos: Estimating protein-DNA binding energies from in vivo binding profiles. Nucleic Acids Res 2013 0.90
20 In vivo genome-wide analysis of multiple tissues identifies gene regulatory networks, novel functions and downstream regulatory genes for Bapx1 and its co-regulation with Sox9 in the mammalian vertebral column. BMC Genomics 2014 0.87
21 Genome wide analysis reveals Zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish. PLoS Genet 2013 0.81
22 Study sequence rules of estrogen receptor α-DNA interactions using dual polarization interferometry and computational modeling. Anal Biochem 2012 0.75