PubRank

C Robin Buell

Author PubWeight™ 150.61‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res 2006 8.26
2 Genome sequence and analysis of the tuber crop potato. Nature 2011 7.77
3 Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci U S A 2009 4.65
4 The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res 2004 4.31
5 Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice (N Y) 2013 4.27
6 The institute for genomic research Osa1 rice genome annotation database. Plant Physiol 2005 3.96
7 Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments. Genome Biol 2008 3.73
8 Sequencing of a rice centromere uncovers active genes. Nat Genet 2004 3.66
9 The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Res 2003 3.12
10 Genome-wide atlas of transcription during maize development. Plant J 2011 3.07
11 High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis. Genomics 2003 3.02
12 The TIGR Plant Transcript Assemblies database. Nucleic Acids Res 2006 2.62
13 Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight. Proc Natl Acad Sci U S A 2003 2.43
14 Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics 2006 2.41
15 Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon. Plant Cell 2002 2.40
16 Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J Bacteriol 2005 2.38
17 Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol 2010 2.36
18 Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci U S A 2002 2.27
19 Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. PLoS One 2012 2.09
20 A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. Genetics 2004 1.94
21 Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres. Genetics 2003 1.92
22 Comparative analyses of potato expressed sequence tag libraries. Plant Physiol 2003 1.84
23 Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor. Proc Natl Acad Sci U S A 2002 1.81
24 Microarray expression profiling resources for plant genomics. Trends Plant Sci 2005 1.65
25 Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. Genome Res 2008 1.63
26 Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches. BMC Genomics 2008 1.62
27 Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes. Plant Physiol 2006 1.61
28 Integration of two diploid potato linkage maps with the potato genome sequence. PLoS One 2012 1.60
29 Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing. PLoS One 2012 1.57
30 Repeatless and repeat-based centromeres in potato: implications for centromere evolution. Plant Cell 2012 1.54
31 Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One 2008 1.53
32 Diversity in conserved genes in tomato. BMC Genomics 2007 1.52
33 Phenotypic and transcriptomic changes associated with potato autopolyploidization. Genetics 2007 1.49
34 Single nucleotide polymorphism discovery in elite North American potato germplasm. BMC Genomics 2011 1.48
35 Intron gain and loss in segmentally duplicated genes in rice. Genome Biol 2006 1.48
36 Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. PLoS One 2013 1.40
37 Transcription and histone modifications in the recombination-free region spanning a rice centromere. Plant Cell 2005 1.37
38 Marker density and read depth for genotyping populations using genotyping-by-sequencing. Genetics 2013 1.32
39 Insights into the maize pan-genome and pan-transcriptome. Plant Cell 2014 1.30
40 Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. BMC Evol Biol 2010 1.28
41 Advances in plant genome sequencing. Plant J 2012 1.28
42 Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in Arabidopsis seeds. Plant Cell 2013 1.27
43 Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. Plant Cell 2006 1.27
44 Gene coexpression network analysis as a source of functional annotation for rice genes. PLoS One 2011 1.25
45 Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts. BMC Genomics 2005 1.25
46 Gene expression profiling of potato responses to cold, heat, and salt stress. Funct Integr Genomics 2005 1.23
47 Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers. Chromosome Res 2002 1.23
48 Characterization of paralogous protein families in rice. BMC Plant Biol 2008 1.19
49 Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A. Mol Plant Microbe Interact 2006 1.19
50 Identification and characterization of lineage-specific genes within the Poaceae. Plant Physiol 2007 1.19
51 Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice. Mol Biol Evol 2004 1.18
52 Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiol 2009 1.18
53 A recommendation for naming transcription factor proteins in the grasses. Plant Physiol 2009 1.17
54 Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species. PLoS One 2012 1.14
55 Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics 2008 1.14
56 Suppression of the vacuolar invertase gene prevents cold-induced sweetening in potato. Plant Physiol 2010 1.11
57 Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. G3 (Bethesda) 2013 1.10
58 The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44. PLoS One 2011 1.08
59 A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number. Genetics 2013 1.08
60 Arabidopsis to rice. Applying knowledge from a weed to enhance our understanding of a crop species. Plant Physiol 2004 1.08
61 Analyzing the potato abiotic stress transcriptome using expressed sequence tags. Genome 2005 1.06
62 Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis. Plant Mol Biol 2006 1.05
63 Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes. PLoS One 2013 1.05
64 A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus. J Biol Chem 2011 1.03
65 Organization and evolution of subtelomeric satellite repeats in the potato genome. G3 (Bethesda) 2011 1.00
66 Tapping the promise of genomics in species with complex, nonmodel genomes. Annu Rev Plant Biol 2013 0.99
67 Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition. BMC Genomics 2008 0.99
68 Identification and characterization of pseudogenes in the rice gene complement. BMC Genomics 2009 0.99
69 Mitochondrial genome sequences and molecular evolution of the Irish potato famine pathogen, Phytophthora infestans. Curr Genet 2005 0.97
70 Transcriptional and metabolic analysis of senescence induced by preventing pollination in maize. Plant Physiol 2012 0.97
71 Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries. G3 (Bethesda) 2013 0.96
72 Genomic approaches for interrogating the biochemistry of medicinal plant species. Methods Enzymol 2012 0.95
73 Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence. Nat Prod Rep 2013 0.93
74 Evolution of chromosome 6 of Solanum species revealed by comparative fluorescence in situ hybridization mapping. Chromosoma 2010 0.93
75 Comparative FISH mapping of Daucus species (Apiaceae family). Chromosome Res 2011 0.92
76 Copy number variation in potato - an asexually propagated autotetraploid species. Plant J 2013 0.92
77 Improvement of whole-genome annotation of cereals through comparative analyses. Genome Res 2007 0.90
78 mRNA-Seq analysis of the Pseudoperonospora cubensis transcriptome during cucumber (Cucumis sativus L.) infection. PLoS One 2012 0.90
79 Functional identification of valerena-1,10-diene synthase, a terpene synthase catalyzing a unique chemical cascade in the biosynthesis of biologically active sesquiterpenes in Valeriana officinalis. J Biol Chem 2012 0.90
80 Plant genome annotation methods. Methods Mol Biol 2009 0.89
81 The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes. Database (Oxford) 2011 0.87
82 Alternative splicing of a multi-drug transporter from Pseudoperonospora cubensis generates an RXLR effector protein that elicits a rapid cell death. PLoS One 2012 0.87
83 Lineage-specific regions in Pseudomonas syringae pv tomato DC3000. Mol Plant Pathol 2005 0.86
84 An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development. Plant Genome 2016 0.85
85 Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones. Plant Cell Physiol 2013 0.84
86 Carbohydrate-active enzymes in pythium and their role in plant cell wall and storage polysaccharide degradation. PLoS One 2013 0.83
87 Plant database resources at The Institute for Genomic Research. Methods Mol Biol 2007 0.83
88 EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome. BMC Genomics 2007 0.82
89 Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis. PLoS One 2012 0.81
90 The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species. Database (Oxford) 2012 0.81
91 Treatment of potato tubers with the synthetic cytokinin 1-(α-ethylbenzyl)-3-nitroguanidine results in rapid termination of endodormancy and induction of transcripts associated with cell proliferation and growth. Funct Integr Genomics 2014 0.77
92 Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum. Plant J 2014 0.77
93 Splendor in the grasses. Plant Physiol 2009 0.76
94 Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes. Brief Funct Genomics 2014 0.75
95 Timber! Felling the loblolly pine genome. Genome Biol 2014 0.75
96 Self-Fertility in a Cultivated Diploid Potato Population Examined with the Infinium 8303 Potato Single-Nucleotide Polymorphism Array. Plant Genome 2016 0.75